BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56460.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486087 jgi|Araly1|486087|fgenesh2_kg.5__2079__AT3G56460.1 2069 0.0
Ahg486086 jgi|Araly1|486086|fgenesh2_kg.5__2078__AT3G56440.1 102 6e-21
> Ahg486087 jgi|Araly1|486087|fgenesh2_kg.5__2079__AT3G56460.1
Length=1294
Score = 2069 bits (1120), Expect = 0.0
Identities = 1239/1297 (96%), Gaps = 6/1297 (0%)
Strand=Plus/Plus
Query 91 gagagagTTATCAGAGATAGCAAAAATGGAGGCTTTGGTTTGCCGGAAATTGGGAGATCC 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGTTATCAGAGATAGCAAAAATGGAGGCTTTGGTTTGCCGGAAATTGGGAGATCC 60
Query 151 AACTGCGACGAATCCAGGTAGTCCAGAATCTCCGGTAGAAGTAAGCAAGACTCATCCGAT 210
|| |||||||| ||||||| |||||| || ||||| ||||||||||||| |||||||||
Sbjct 61 GACGGCGACGAAGCCAGGTAATCCAGATTCGCCGGTGGAAGTAAGCAAGATTCATCCGAT 120
Query 211 CCCGTCTTTGAATTCAGACACGTCGGTGAGAGTCAGAGTTATTGCTACGAGCTTGAATTA 270
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 121 CCCGTCTTTGAATTCAGACACGGCGGTGAGAGTTAGAGTTATCGCTACGAGCTTGAATTA 180
Query 271 CGCAAATTACCTTCAGATTCTCGGGAAATACCAGGAGAAACCTCCGTTACCTTTCATTCC 330
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 181 CGCCAATTACCTTCAGATTCTCGGGAAATACCAGGAGAAACCTCCGTTACCATTCATCCC 240
Query 331 GGGCTCTGATTACTCCGGAATCGTCGACGCGATTGGTCCCGCCGTCACCAAATTCCGCGT 390
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 241 TGGCTCCGATTACTCTGGAATCGTCGACGCTATTGGTCCCGCCGTCACCAAATTTCGCGT 300
Query 391 TGGAGATCGTGTCTGTTCTTTCGCCGATCTCGGTTCCTTCGCTCAGTTTATCGTCGCTGA 450
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 CGGTGATCGTGTCTGTTCTTTCGCCGATCTCGGTTCCTTCGCTCAGTTTATCGTCGCCGA 360
Query 451 TCAATCTCGTTTGTTCCTTGTACCGGAAAGATGTGACATGGTTGCTGCAGCTGCGCTTCC 510
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGTCTCGTCTGTTCCTTGTACCGGAAAGATGTGACATGGTTGCTGCAGCTGCGCTTCC 420
Query 511 TGTTGCGTTTGGGACTTCTCATGTAGCACTTGTTCATAGAGCTCGTTTAACATCTGGTCA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTGCGTTTGGGACTTCTCATGTAGCACTTGTTCATAGAGCTCGTTTAACATCTGGTCA 480
Query 571 GGTCTTATTGGTTCTAGGTGCTGCTGGTGGCGTTGGCCTTGCAGCTGTTCAAATCGGTAA 630
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 481 AGTCTTATTGGTTCTAGGTGCTGCTGGTGGTGTTGGTCTTGCAGCTGTTCAAATCGGCAA 540
Query 631 GGTTTGTGGAGCCATTGTCATTGCAGTTGCTAGAGGAACTGAGAAGATTCAACTGTTGAA 690
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GGTTTGTGGAGCCATTGTCATTGCAGTTGCTAGAGGAACTGAGAAGATTCAGCTGTTGAA 600
Query 691 GTCAATGGGAGTGGATCATGTTGTTGATCTAGGCACTGAGAATGTTATTTCAAGTGTGAA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 GTCAATGGGAGTGGATCATGTTGTTGATCTAGGCACTGAGAATGTTATTTCAAGTGTCAA 660
Query 751 AGAGTTTATCAAGACAAGAAAGCTTAAAGGAGTTGATGTTCTGTATGATCCTGTTGGAGG 810
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 661 AGAGTTTATCAAGACAAGAAAGCTTAGAGGAGTTGATGTTTTGTATGATCCTGTGGGAGG 720
Query 811 GAAACTAACCAAGGAGTCCATGAAAGTTCTGAAATGGGGAGCCCAGATTCTGGTGATAGG 870
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 GAAACTAACCAAGGAGTCCATGAAAGTTCTGAAATGGGGAGCTCAGATTCTGGTGATAGG 780
Query 871 TTTCGCCAGCGGCGAAATACCTGTCATTCCTGCTAATATAGCACTTGTTAAGAACTGGAC 930
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 TTTCGCCAGCGGCGAAATACCTGTGATTCCTGCTAATATAGCACTTGTTAAGAACTGGAC 840
Query 931 GGTTCATGGTCTTTACTGGGGTAGCTACAGGATCCATCAGCCCAATGTCCTTGAAGATTC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGTTCATGGTCTTTACTGGGGTAGCTACAGGATCCATCAGCCCAATGTCCTTGAAGATTC 900
Query 991 CATCAAAGAGTTATTGTCATGGCTTTCCCGAGGATTGATCACTATTCACATCTCTCATAC 1050
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATCAAAGAGTTACTGTTATGGCTTTCCCGAGGATTGATCACTATTCACATCTCTCATAC 960
Query 1051 CTATAGCCTCTCCCAGGCCAATCTTGCATTCGGGGACCTCAAAGACAGGAAGGCAATTGG 1110
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 CTATAGCCTCTCCCAGGCCAATCTTGCATTCGGGGATCTCAAAGACAGGAAGGCAATTGG 1020
Query 1111 AAAAGTGATGATTGCTCTCGACCACAAGACTGCCCTGTCTTCAAAACTATAGACTCTTTA 1170
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |
Sbjct 1021 AAAAGTGATGATTGCTCTCGACCACAAGACTGCCGTGTCGTCAAAACTTTAGACTCTCTG 1080
Query 1171 TGGCCGTAGGAGAAAACAGCTTATGTATTCTAGAAATAAGGTTATTGCAATGGCCATGTA 1230
||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TGGCCATAGGAGAAAACTGCTTCTGTATTCTAGAAATAAGGTTATTGAAATGGCCATGTA 1140
Query 1231 AGCTGAACCATCTTGCATTTATAT-CTGGCATATAATCCACATTCTGATTTGAAATTTCA 1289
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
Sbjct 1141 AGCTGAACCATCTTGCATTTATATTC-GGCCTATAATCCACATTCTGATTTGAAATTT-A 1198
Query 1290 ATAA-ACGTTATCGAATTGCAGTTTGATTTTCTCTAGAAA-TTAGTGTAGTTATAAATCC 1347
|||| | || ||||||||||||||||||| |||||| ||| ||||||||| |||||||||
Sbjct 1199 ATAATA-GTAATCGAATTGCAGTTTGATTCTCTCTAAAAAATTAGTGTAGATATAAATCC 1257
Query 1348 TTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1384
|||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1294
> Ahg486086 jgi|Araly1|486086|fgenesh2_kg.5__2078__AT3G56440.1
Length=1600
Score = 102 bits (55), Expect = 6e-21
Identities = 58/59 (98%), Gaps = 1/59 (2%)
Strand=Plus/Minus
Query 1342 AAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTTTCCTTCAATCAAGTAA 1400
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1600 AAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTT-CCTTCAATCAAGTAA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5