BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56470.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486089 jgi|Araly1|486089|fgenesh2_kg.5__2081__AT3G56470.1 1585 0.0
> Ahg486089 jgi|Araly1|486089|fgenesh2_kg.5__2081__AT3G56470.1
Length=1080
Score = 1585 bits (858), Expect = 0.0
Identities = 1008/1082 (93%), Gaps = 4/1082 (0%)
Strand=Plus/Plus
Query 28 aagaagaagacgaaaaggaagaaacagagtagcaaggaaaaagaaaagTATCAAACTTTC 87
|||||||||||||||| ||||| |||||||| || |||||||||||| | |||||||||
Sbjct 1 AAGAAGAAGACGAAAAATAAGAAGCAGAGTAGGAATGAAAAAGAAAAGGACCAAACTTTC 60
Query 88 ATAAACCTTCCTTGTGATCTCTTACAACTGGTAATTTCTCGTCTCCCGTTGAAAGATAAC 147
||||| ||||| | |||||||||| ||||||| ||||| ||||| | |||||||| |||
Sbjct 61 ATAAATCTTCCCTCTGATCTCTTAAAACTGGTGATTTCCCGTCTTTCATTGAAAGACAAC 120
Query 148 ATCCGTGCTTCTGCTGTCTGCAAAACATGGCACGAAGCTTGTGTTTCTCTTCGAGTGATA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCGTGCTTCTGCTGTCTGCAAAACATGGCACGAAGCTTGTGTTTCTCTTCGAGTGATA 180
Query 208 CATACATCTCCTTGGCTTATTTACTTCTCCAAAACAGACGATTCCTATGAACTTTATGAC 267
|| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 CACACATCTCCTTGGCTTATCTACTTTTCCAAAACAGACGAATCCTATGAACTTTATGAC 240
Query 268 CCATCAATGCAGAAAAAC-TGCAATCTTCACTTCCCTGAGTTATCCGGTTTTCGAGTTTG 326
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCATCAATGCAG-AAAACATACAATCTTCACTTCCCTGAGTTATCCGGTTTTCGAGTTTG 299
Query 327 TTACTCCAAAGATGGTTGGTTACTCATGTACAATCCCAATTCTTATCAACTCCTTTTCTT 386
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 300 TTACTCCAAAGATGGTTGGTTACTCATGTACAATGCCAATTCCTATAAACTCCTTTTCTT 359
Query 387 CAATCCCTTTACTCGTGATTGCGTACCCATGCCTACGCTTTGGATGGCATATGATCAAAG 446
|||||| ||||| |||||| | ||||| | ||| |||||||||||||||||||||||||
Sbjct 360 CAATCCGTTTACCCGTGATCACATACCCGTACCTCCGCTTTGGATGGCATATGATCAAAG 419
Query 447 AATGGCTTTCTCTTGTGCTCCTACATCAACTAGTTGTCTCTTGTTCACTGTCACTTCTGT 506
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 420 AATGGCTTTCTCTTGTGCTCCTACATCAACTAGTTGTCTCTTGTTCACTATCAGTTCTGT 479
Query 507 CACTTGGAATTACATCACCATCAAGACATATTTTGCTAATGCTAAAGAGTGGAAAACATC 566
||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||
Sbjct 480 CACTTGGAATTACATCACCATCAAGACATGTTGTGCTGATGCTCAAGAGTGGAAAACATT 539
Query 567 TGTGTTCAAGAATCGGTTACAGCGAAACTTCAACACTTTCGAGCAGATTGTCTTCTCCAA 626
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGAGTTCAAGAATCGGTTACCGCGAAACTTCAACACTTTCGAGCAGATTGTCTTCTCAAA 599
Query 627 TGGTGTCTTCTACTGCCTCACAAACACCGGATGCTTAGCTCTCTTTGACCCATCTTTGAA 686
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TGGTGTCTTCTACTGCCTCACAAACACCGGATGCTTAGCGCTCTTTGACCCATCTTTGAA 659
Query 687 TTATTGGAATGTTCTTCCTGGGAGACCTCCTAAACGTCCTGGAAGCAACGGATGCTTTAT 746
|| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 660 TTCTTGGAATGTTCTTCCCGGGCGACCTCCTAAACGTCCTGGAAGCAACGGATGCTTCAT 719
Query 747 GACAGAACACCAAGGAGAGATCTTTCTCATTTATATGTACAGACACATGAACCCAACAGT 806
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GACAGAACACCAAGGAGAGATCTTTCTTATTTATATGTACAGACACATGAACCCAACAGT 779
Query 807 GCTTAAACTTGACCTTACTAGCTTTGAATGGGCTGAGAGGAAAACACTGGGAGGCTTGAC 866
|||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||
Sbjct 780 GCTTAAACTTGATCTTACAAGCTTTGACTGGACTGAGAGGAAAACACTAGGAGGCTTGAC 839
Query 867 GATCTACGCAAGCGCTTTGTCTTCTGAATCCAGAGCCGAGCAGCAGAAGCAGAGTGGAAT 926
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 840 GATCTACGCTAGCGCTTTGTCTTCTGAATCGAGAGCCGAGCAGCAGAAGCCGAGTGGAAT 899
Query 927 ATGGAACTGTTTGTGTCTCTCTGTGTTCCATGGATTCAAGAGGACTTGCATATATTATAA 986
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AAGTAACTGTTTGTGTCTTTCTGTGTTCCATGGATTCAAGAGGACTTGCATATATTATGA 959
Query 987 GGTTGATGAAGAGAGTGAGGTTTGCTTCAAGTGGAAAAAACAGAA-CCCTTATGAGAATA 1045
||||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||||||
Sbjct 960 GGTTGATGAAGAGAGTGAGATCTGCTTCAAGTGGAGAAAACAGAATCCCT-ATGAGAATA 1018
Query 1046 TCTGGATCATGCCACCACTCAACCTCATTGATCTCCCTTTGTTTGATCATCGTATCTAGT 1105
| |||||||||||||||||||||||| ||||||||||||| |||||||| | |||| |||
Sbjct 1019 TTTGGATCATGCCACCACTCAACCTCCTTGATCTCCCTTTATTTGATCAACTTATCAAGT 1078
Query 1106 AA 1107
||
Sbjct 1079 AA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5