BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56480.1
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324161 jgi|Araly1|324161|fgenesh1_pm.C_scaffold_5001705 2357 0.0
> Ahg324161 jgi|Araly1|324161|fgenesh1_pm.C_scaffold_5001705
Length=1476
Score = 2357 bits (1276), Expect = 0.0
Identities = 1411/1477 (96%), Gaps = 5/1477 (0%)
Strand=Plus/Plus
Query 310 ATGACGAAAGTGTGTCCTGAAAT---AGAAGGGACATTATCTTTATCAGTGGTTCCAGTA 366
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGAAAGTGTGTCCTGAAATAGAAGAAGGGACATTATCTTTATCAGTTGTTCCAGTA 60
Query 367 TCAGTAGATGTGAGCTTTGCTTCTGATCACTTTCCAACATATAAATTAGGACCTGATAAT 426
|||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 61 TCAGTAGATGTGAGCTTTGCTTCTAATCACTTTCCAGCATACAAATTAGGACCTGATAAT 120
Query 427 CAGATAGTAGAGGAACCAAAGGAAGATGAAAAAGGTCCATCTGTGAAGGAGACTGTCGAG 486
||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||
Sbjct 121 CAGATAGTAGAGGAACCTAAGGAAGATGAAAAAGGTCCATCAGTCAAAGAGACCGTCGAG 180
Query 487 AAAGAGAGCGAGTTGTTGTCTGATCAGCACAAGCGGCTTTCGGTCCGTGACCTCGCTAGT 546
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAGAGAGCGAGCTGTTGTCTGATCAGCACAAGCGGCTTTCGGTCCGTGACCTCGCTAGT 240
Query 547 AAATTCGACAAGAATCTTGCTGCAGCTGTTAGTTTGGCTAATGAGGCTAAGTTAAGAGAG 606
||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 241 AAATTCGACAAGAATCTTGCTGCAGCTGTTAATTTGGCCGATGAGGCTAAATTAAGAGAG 300
Query 607 GTGGCTTCTTTGGAGGGACATGTTATGTTGAAGAAGCTAAGGGATGCTTTAGAATACATG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGCTTCTTTGGAGGGACATGTTATGTTGAAGAAGCTAAGGGATGCTTTAGAATACATG 360
Query 667 AGAGGACGCACGGATGGGCAAAACAAACAGGATGTGGAGACAGCTATCTCCATGGTGGAA 726
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 361 AGAGGACGCACGGATGGGCAAAACAAGGAAGATGTGGAGACAGCTATCTCCATGGTCGAA 420
Query 727 GCTCTAGCTGTGAAGTTAACTCAGAATGAAGGTGAATTGATTCAGGAGAAGTTTGAAGTG 786
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 421 GCTCTAGCTGTGAAGTTAACTCAGAATGAAGGTGAATTAATTCAAGAAAAGTTTGAAGTG 480
Query 787 AAGAAACTAGGAAACTTCCTCAAGCAGACTTCAGAAGATGCAAAGAAACTGGTAAATCAA 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGAAACTAGGAAACTTCCTCAAGCAGACTTCAGAAGATGCAAAGAAACTGGTAAATCAG 540
Query 847 GAAAAGTCATTCTCTTGTGCTGAGATCGAAACTGCAAGGGCCGTTGTGCTGAGACTTGGA 906
|||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 541 GAAAAGTCATTCGCTTGTGCCGAGATCGAAACTGCTAGGGCCGTTGTGCTGAAACTTGGA 600
Query 907 GAGGCTTTTGAAGAACAAGAACGGATTTCTGAAGCTTCTAGAGCTCAGGGGCCGGATGTG 966
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 GAGGCTTTTGAAGAGCAAGAACGGATTTCTGAAGCTTCTAAAGCTCAGGGGCCGGATGTG 660
Query 967 GAGAAATTGGTTGAGGAAGTTCAAGAGGCTAGGCAAATCAAACGGATGCATCACCCAACA 1026
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGAAATTGGTAGAGGAGGTTCAAGAGGCTAGGCAAATCAAACGGATGCATCACCCAACA 720
Query 1027 AAGGTGATGGGCATGCAACACGAGCTTCATGGTTTAAGGAATCGAATCCAAGAGAAGTAT 1086
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 721 AAGGTGATGGGCATGCAACACGAGCTTCATGGTTTAAGAAATCGAATCCAAGAAAAGTAT 780
Query 1087 ATGAATTCTGTTAAACTTCATAAAGAGATAGCAATAATCAAGAGAGTTGAGGAATCCAAG 1146
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 ATGAATTCTGTTAAACTTCATAAAGAGATAGCAATAATCAAGAGAGCTGAGGAATCCAAG 840
Query 1147 TCTTGTCCATTTGTTCTTGAAGGCAAACAAAGTCTCGGCTCTTGCTTAAGAATCCGTGTC 1206
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 841 TCCTGTCCATTTGTTCTTGAAGGCAAGCAAAGTCTCGGCTCTTGCTTACGAATCCGTGTC 900
Query 1207 AATGCT-CAAGACAATGCTCCAGATCTTTCCAACTGTTCTATTCAGTGGTATCGTGCAGC 1265
|||||| || |||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 901 AATGCTGCA-GACAATGCTCCAGATCTTTCTAACTGTTCGATCCAGTGGTATCGTGCAGC 959
Query 1266 ATGTGAAACTAGTCGCAGGGAAGCTATATCTGGTGCCATCCAATCGATGTATGCTCCAGA 1325
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGTGAAACTAGTAGAAGGGAAGCTATATCTGGTGCCATCCAATCGATGTATGCTCCAGA 1019
Query 1326 ACCATTTGATGTTGGGAGGATATTACAGGCAGACATTCTTTCAAATGGTCAAAAGTTCAC 1385
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1020 ACCATTTGATGTTGGGAGGATCTTACAGGCAGACATTCTTTCAAAGGGACAAAAGTTCAC 1079
Query 1386 AGTTACAACCGATGATCCAGTTGATCCTGATTCTGGCTTGCCATCCCGCGTAGAGTCGCT 1445
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 1080 AGTTACAACCGATGATCCAGTTGATCCTGATTCTGGTTTGCAATCCCGCGTAGAGTCTCT 1139
Query 1446 GATGCGAAAGTCTAACAGTGAATTCAGTGTGGTTATATCGCAGATGAATGGACAAGACTA 1505
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GATGCGAAAATCCAACAGCGAATTCAGTGTGGTTATATCGCAGATAAATGGACAAGACTA 1199
Query 1506 TGCATCTCGATCGCACGTTTTTACCGTTGGAAAGACGAGGATAAAGCTGTCTCGAGGATG 1565
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGCATCCCGATCTCACGTCTTTACCGTTGGAAAGACGAGGATAAAGCTGTCTCGAGGATG 1259
Query 1566 GATCACAAAGGCGAGAGAATTATATTCGACATCCATGCAGCTCTGTGGAGTTAGAGGCAA 1625
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 GATCACAAAGGCGAGAGAATTATATTCGACATCCATGCAGCTCTGTGGAGTTAGGGGCAA 1319
Query 1626 TATTAAGGCTCCTACCAAGGCAGTGTTCTGGCAACCAAGAAAGAGTCTAACTTTCATACT 1685
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 TATTAAAGCTCCTACCAAGGCAGTGTTCTGGCAACCAAGAAAGAGTCTAACATTCATACT 1379
Query 1686 AACCTTTGAGTCAGAACACGAACGTAACGCAGCCATAGCCCTTGCTCGAAAATACGCTTT 1745
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 AACCTTTGAGTCAGAACAAGAACGTAACGCAGCCATAGCCCTGGCTCGAAAATACGCTTT 1439
Query 1746 CGATTGCAGTGTTACACTGCTTGGTCCAGATGATTAA 1782
|||| ||| ||||||||||||||||||||||||||||
Sbjct 1440 CGATAGCAATGTTACACTGCTTGGTCCAGATGATTAA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81436943810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5