BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56490.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486090 jgi|Araly1|486090|fgenesh2_kg.5__2082__AT3G56490.1 1127 0.0
> Ahg486090 jgi|Araly1|486090|fgenesh2_kg.5__2082__AT3G56490.1
Length=820
Score = 1127 bits (610), Expect = 0.0
Identities = 766/835 (92%), Gaps = 36/835 (4%)
Strand=Plus/Plus
Query 1 GTCTACGAATTTAGGGTTTAA-TTT-GTGTTAATGAGCCACCGTGTTTCGATTCTATCAT 58
||| ||| |||||||| |||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1 GTCGACGGATTTAGGG-TTAATTTTGGT-TTAATGAGCCACCGTGTTTCGATTCTATCAT 58
Query 59 CTCATTTCTCACCTGC-CTCCGCCGTCATGGCTTCCGAGAAAGAAGCTGCTCTCGCCGCC 117
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTCATTTCTCACCT-CTCTCCGCCGTCATGGCTTCCGAGAAAGAAGCTGCTCTCGCCGCC 117
Query 118 ACTCCTTCCGATTCTCCCACCATATTTGACAAGATCATCAGCAAAGAGATTCCATCCACC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 ACTCCTTCCGATTCTCCCACCATATTTGACAAGATCATCAGCAAAGAAATTCCATCCACC 177
Query 178 GTGGTTTTTGAGGATGACAAGGTCTTAGCTTTTAGGGACATAACGCCCCAGGGTCCTGTT 237
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 ATGGTTTATGAGGATGACAAGGTCTTAGCTTTTAGAGACATAACGCCCCAGGGTCCTGTT 237
Query 238 CACATCCTCCTTATTCCAAAAGTGAGGGATGGCCTAACTGGCCTCTCTAAGGCTGAGGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CACATCCTCCTTATTCCAAAAGTGAGGGATGGCCTAACTGGCCTCTCTAAGGCTGAGGAA 297
Query 298 AGGCACATCGACATCTTGGGCCGCCTTCTCTACACTGCCAAGCTTGTAGCAAAACAAGAA 357
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 298 AGGCACATCGACATCTTGGGCCGCCTTCTCTACACTGCTAAGCTCGTAGCGAAACAAGAA 357
Query 358 GGCCTAGCAGAGGGTTTCAGAATTGTTATCAATGATGGTCCTCAAGGCTGTCAATCGGTG 417
||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 358 GGCCTAGAAGAGGGTTTCAGAATTGTGATCAATGATGGTCCACAAGGCTGTCAATCGGTG 417
Query 418 TATCACATTCATGTTCATCTCATTGGAGGACGCCAAATGAACTGGCCTCCTGGTTAAA-G 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 418 TATCACATTCATGTTCATCTCATTGGAGGACGTCAAATGAACTGGCCTCCTGGCTAAAAG 477
Query 477 AT--CATCTTGAAGTGGATTGTTGTCCTGATGATAAGAGGGACGCTTAGAGTTTGCTCTC 534
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 478 ATATCATCTTGAAGTGGATTGTTGTCCTGATAATAAGAGGGACGCTTAGAGTTTGATCCC 537
Query 535 GTCTACTA--A-TGTCTCTATAAATaaaaaaa--CGTGGGACATGACTTTTATGATTGTT 589
|||| || | |||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 538 GTCTTCTTCTACTGTCTCTATAAATAAAAAAAAACTTGGGACATGAGTTTTATGATTGTT 597
Query 590 ATGCAAAACCTTATTTTATGTTATGAAAAGGATATTTCACTGTTTTCTCTTCTGGAATCT 649
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 ATGCAAAACCTTGTTTTATGTTATGAAAAGGATATTTGACTGTTTTCTCTTCTGGAATCT 657
Query 650 TGTGGTTG----CTTTT-CTCTATTATTGACTCTGTAAAAATTGACTGCGTTTAAA-C-- 701
|||||||| ||||| |||||||||| |||| ||| |||||| |||||| |||| |
Sbjct 658 TGTGGTTGGTTGCTTTTTCTCTATTATTAACTCCGTAGAAATTGTCTGCGTGTAAAACTT 717
Query 702 CAGAGCGCCATCTTTAAGGAAGAATACCAGAG-AGTAGAGACGCATGAATTGACCTTGTA 760
|| | | | | ||| | | ||| |||||| | ||||||||||||||||||||||||
Sbjct 718 CA-A-C-C--T-TTT--G-A-GAA-ACCAGAATACCAGAGACGCATGAATTGACCTTGTA 766
Query 761 AACATCCACGACGTGTTCATGAGCTTCTGACATAATATTATATACAAA-CTTGGT 814
||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 767 AACATCCACTACGTGTTCATGAGCATCTGACATAATATTATATA-AAAGCTTGGT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5