BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56510.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486092 jgi|Araly1|486092|fgenesh2_kg.5__2084__AT3G56510.2 1607 0.0
> Ahg486092 jgi|Araly1|486092|fgenesh2_kg.5__2084__AT3G56510.2
Length=1230
Score = 1607 bits (870), Expect = 0.0
Identities = 1020/1090 (94%), Gaps = 19/1090 (2%)
Strand=Plus/Plus
Query 10 TCTTCTTCTTCTTCCGAACGGAGAGTACTAGTTGTTCGCCGACGGCACTAGCTTCTTTTT 69
||||||||||||||||||| |||||||| | ||||||||||| |||||||||||| ||
Sbjct 1 TCTTCTTCTTCTTCCGAACAGAGAGTACCA---GTTCGCCGACGTCACTAGCTTCTTCTT 57
Query 70 C-T--TT-CTCACT-T-TC-GCTGCTGAAGAAGATGCAGAGTGAGGAATCTCACGAGCTT 122
| | || || ||| | | |||||||| ||||||||||| |||||||| |||||| |||
Sbjct 58 CTTAATTACTTACTCTCGCAGCTGCTGATGAAGATGCAGACTGAGGAATTTCACGACCTT 117
Query 123 ACGGATGGAATATCCGAGGAGAAGGAGTCCAAGGAAACGATGAAGAGTCAAAAGGCTGAT 182
||| ||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||||
Sbjct 118 ACGAATGGAATCTCCGA-G-G-AGGAGTCGAAGGAAACAAAGAAGAGTCAAAAGGCTGAT 174
Query 183 AGAAAGAAAAAGAAGTTGAAAGAGAAATTGCTTAAGGAAGCTTCGAAAGCTGACAATAGA 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 175 AGAAAGAAAAAGAAGTTGAAAGAGAAATTGCTTAAGGAAGCTTCTAAAGCTGACAATAGA 234
Query 243 GGTGTTTGCTACTTAAGTCGTATCCCACCACACATGGATCACGTTAGACTTCGCCATATT 302
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 235 GGGGTTTGCTACTTAAGTCGTATCCCACCACACATGGATCACATTAGACTTCGCCATATT 294
Query 303 CTCGCTCAATATGGAGAACTCGGAAGGATTTATCTTGCACCTGAAGATTCTGAAGCACAA 362
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTCGCTCAATTTGGAGAATTAGGAAGGATTTATCTTGCACCTGAAGATTCTGAAGCACAA 354
Query 363 GTGCACCGTAAGCGGGCTGGTGGATTTCGTGGCCAAAGGTTTTCTGAAGGGTGGGTGGAG 422
|| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 355 GTTCACCGCAAGCGTGCTGGTGGATTTCGTGGGAAAAGGTTTTCTGAAGGGTGGGTGGAG 414
Query 423 TTTGCTAAGAAGAGCGTAGCTAAACGGGTTGCAGATATGCTAAATGGAGAACAAATCGGG 482
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTTGCTAAGAAAAGCGTAGCTAAACGGGTTGCAGATATGCTAAATGGAGAACAAATCGGG 474
Query 483 GGGAAAAAGAAGTCATCAGTATACTATGATATTTGGAACATCAAATACTTGACCAAATTT 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 GGGAAAAAGAAGTCATCAGTATATTATGATATTTGGAACATCAAATACTTGACCAAATTT 534
Query 543 AAATGGGATGATCTTACTGAAGAAATCGCATACAAAAGTGCAATACGGGAACAGAAATTA 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 535 AAATGGGATGATCTTACTGAAGAAATCGCATACAAAAGCGCAATACGGGAACAGAAATTA 594
Query 603 AATATGGTTCTTTCTGCTGCAAAGAGGGAGAAAGACTTTTATCTATCTAAAATAGAGAAG 662
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 AATATGGTTCTTTCTGCTGCAAAGAGGGAGAAGGACTTTTATCTATCTAAAATAGAGAAG 654
Query 663 TCTCGTGCCATGACCGAGATAGATGCACGAATGGAAAAGAAACGAAAGATTCAAGAAGAA 722
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 TCACGTGCCATGACCGAGATAGATGCACGAATGGAAAAGAAACGAAAGATTCAGGAAGAA 714
Query 723 TCGGGTAGCAATGCTGAAGCAGCACCAGTCTTTCCACCTAGGGCGATTTTCCAGTTTAGA 782
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 715 TCGGGTAGCAATGCTGAAGCAGCACCAGTCTTTCCACCTAGGGTGATTCGCCATTTTAGA 774
Query 783 CAGAAGAAATCAATTGAAAATGAGACATCTCAAAGCAAGCCTGGGCTCTCCACTGATTTC 842
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 775 CAGAAGAAATCAATTGAAAATGAGACATCTCAGAGCAAGCCTGGGCTCTCCACTGATTTC 834
Query 843 CTAGCATCGGTATTTGGCGGTTCTTAA-GGTTAAGAGG-CATGTGACGTTGCGAATTGAT 900
||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 835 CTAGCATCGGTATTTGGCGGTTCTTAAAGGTTAAGAGGGCATGTGACACTGCGAATTGAT 894
Query 901 CATAGCTTGATGGAGAAATCAATGAGCAATTCCATTATGTATGAATGTCAATTAGTTTCT 960
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 895 CATAGCTTGATGGAGAAATCAATGATCAACTCCATTATATATGAATGTCAATTAGTTTCT 954
Query 961 GCAACTCAACAGAGAAAATATTCACATACACTTAGCAATTTGTATACTTTTGTGTTCTCC 1020
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 955 GCATGTCAACAGAGAAAATATTCACATACACTTAGCATTTTGTATACTTTTGTGTTCTCC 1014
Query 1021 TTATAAGGTTAGCTATATAC--TATTGTCAAGAAACATATATGTGAAATTTCCACCACCa 1078
|||||||||| |||||||| |||||||||||||||| | |||| ||||||||||||
Sbjct 1015 TTATAAGGTTTCCTATATACACTATTGTCAAGAAACATGT--GTGACCTTTCCACCACCA 1072
Query 1079 aaaaaaaaaa 1088
|||||||||
Sbjct 1073 CAAAAAAAAA 1082
Score = 167 bits (90), Expect = 2e-40
Identities = 109/118 (92%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1171 GGAAAAAACAATCTTCTAGACAATCAGGACGGCACCATACTGGTTTTGTGAATAACGAAA 1230
|||||||||||||||| | ||||||||||| | || ||| ||||||||||||||||| ||
Sbjct 1115 GGAAAAAACAATCTTCAATACAATCAGGACCGTACAATATTGGTTTTGTGAATAACG-AA 1173
Query 1231 GAGAGACTATGTGACATTATTGGTCACCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 1288
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1174 -AGAGACTATGTGACATTATTGGTCATCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5