BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56520.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324164 jgi|Araly1|324164|fgenesh1_pm.C_scaffold_5001708 678 0.0
Ahg936463 jgi|Araly1|936463|scaffold_500654.1 291 5e-78
Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541 230 1e-59
> Ahg324164 jgi|Araly1|324164|fgenesh1_pm.C_scaffold_5001708
Length=504
Score = 678 bits (367), Expect = 0.0
Identities = 448/487 (92%), Gaps = 5/487 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCAACACACAGAGCTTTGCCCGTAGGATTCAGGTTTCGTTCTACAAACTGTGAG 60
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAGCCAACACACAAAGCTTTGCCCGTAGGATTCAGGTTTCGTCCTACAAACTGTGAG 60
Query 61 ATTTCAAACTATTTTTTGAAGAAAAAAGCTTTAGGACAACCCATGAAAGCTCGTACGATA 120
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 ATTGCAAACTATTTCTTGAAGAAAAAAGCTTTAGGACAACCCATGAAAGCTCGTACGGTA 120
Query 121 CCTGAAGAGTGTCATGATATCTTCTCAAGACATCCGCATGATCTGCCTGGTTATCCAAGT 180
|||||||||||||||||| ||||||| |||||||| | |||| | ||||| |||||||
Sbjct 121 CCTGAAGAGTGTCATGATGTCTTCTCGAGACATCCTCGTGATTTTCCTGGCTATCCAAAA 180
Query 181 GAAGAACATTGGTACTATTTTTGCAGAAAACGTGACAACCAAGTTACTAGTAACTCTCAT 240
||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 181 GAAGAGCACTGGTACTATTTTTGCAGAAAACGTAACAACCAAGTTACTAGTAACTCTCCT 240
Query 241 AATCTCTGGACACCAATCGGAGAAGAAACCAATGTGCTAGATCCAAAGAATAATGATGCA 300
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||
Sbjct 241 AATCTCTGGACACCAATCGGAGAAGAAACTAATGTGTTAGATCCAAAGAATAATGGTGCC 300
Query 301 TTAGTTGGTATTAAGCGTCGGTTTACTCTTATTGCGCAAGAAGAAGAAGAATCTGATAAT 360
||||| ||||| || |||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 301 TTAGTCGGTATCAAACGTCGGCTTACTCTCATTGCGCAAGAAGAAGAA---TCTGATAAT 357
Query 361 ATTTGTTTATCTGATGATGAAGAAGCTTTAAAGTATAATTGGTTCATGGATGAAATTAGC 420
|||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||
Sbjct 358 ATTTGTTTGTCTGATGAAGAAGAAGCTCCAAAGTATAACTGGTTCATGGATGAAATTAGC 417
Query 421 CTCCCACAAACAGTAGC-GAATACTGATTGGGTTTTATGCCATATTTTTGGCAAGAAGAC 479
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 418 CTCCCACAAACAGTAGCAGA-TACTGATTGGGTTTTATGCCATATTTTTGGCAAGACGAT 476
Query 480 TAAACCC 486
|||||||
Sbjct 477 TAAACCC 483
> Ahg936463 jgi|Araly1|936463|scaffold_500654.1
Length=629
Score = 291 bits (157), Expect = 5e-78
Identities = 250/293 (85%), Gaps = 13/293 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCCAACACACAGAGCTTTGCCCGTAGGATTCAGGTTTCGTTCTACAAACTGTGAG 60
|||||||||| | ||||| ||||||| ||||||||| ||||||| | |||| | ||||
Sbjct 23 ATGGAGCCAATATACAGACCTTTGCCTATAGGATTCAAGTTTCGTCCAACAAGGTTTGAG 82
Query 61 ATTTCAAACT-ATTTTTTGAAGAAAAAAGCTTTAGGACAACCCATGAA-AGCTCGTACGA 118
|| |||| | |||||||||||||||||||||||||||| | || || |||||||| |
Sbjct 83 ATGGCAAA-TAATTTTTTGAAGAAAAAAGCTTTAGGACAGGCAAT-AATAGCTCGTAGGG 140
Query 119 TACCTGAAGAGTGTCATGATATCTTCTCAAGACATCCGCATGATCTGCCTGGTTATCCAA 178
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 141 TACCTGAAGAGTGTCATGATATCTTCTCAAGACATCCTCGTGATTTGCCTGGTTATCCAA 200
Query 179 GTGAAGAACATTGGTACTATTTTTGCAGAAAACGTGACAACCAAGTTACTAGTAACTCTC 238
| ||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||| ||
Sbjct 201 GAGAAGAGCATTGGTATTATTTTTGCAGGAAACGTAACAACCAAGTTACTTGTAAC-CT- 258
Query 239 ATAATCTCTGGACACCAATCGGAGAAGAAACCAATGTGCTAGATCCAAAGAAT 291
|| |||||||||| |||||||||||||||||| || |||||||||||
Sbjct 259 AT-------GGACACCAATAGGAGAAGAAACCAATGTGTTATATCCAAAGAAT 304
> Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541
Length=630
Score = 230 bits (124), Expect = 1e-59
Identities = 350/452 (77%), Gaps = 43/452 (10%)
Strand=Plus/Plus
Query 70 TATTTTTTGAAGAAA-AAAGCTTTAGGAC-AACCCATGAAAGCTCGTACGATACCTGAAG 127
||||||||| | ||| ||||||||||||| | |||| ||||||||||| ||||||||||
Sbjct 76 TATTTTTTG-ATAAATAAAGCTTTAGGACTTA-CCATAAAAGCTCGTACTATACCTGAAG 133
Query 128 AGTGTCATGATATCTTCTCAAGACATCCGC-ATGATCT-GCCTGGTTATCCAAGTGAAGA 185
||||||||||||||||||||| |||||| | | || || |||||| ||| ||| |||||
Sbjct 134 AGTGTCATGATATCTTCTCAATACATCCTCGA-GA-CTTGCCTGGCTATGGAAGCGAAGA 191
Query 186 ACATTGGTACTATTT-TTGC-AGAAAACGTGACAACCAAGTTACTAGTAAC---TCTCAT 240
|||||||||| | | |||| | ||||| | || |||||||||| || | ||| ||
Sbjct 192 GCATTGGTACT-TCTATTGCCAAAAAACCA-AGAATCAAGTTACTACTACCAAATCTTAT 249
Query 241 AATCTCTGGACACCAATC-GGAGAAGAAACCAATGTGCTAGATCCAAAGAATAATGATGC 299
||||||||| ||||| | ||||||||||| ||||| |||||||||| || ||||| |
Sbjct 250 CATCTCTGGATACCAA-CAGGAGAAGAAACTGATGTGTTAGATCCAAAAAAGAATGACGA 308
Query 300 ATTAGTTGGTATTAAGCG-TCGGTTTACTCTT-ATTGCG--C-AAGAAGAAGAAGAA--- 351
|||||| ||||| || || || ||| || || |||| | | ||||||||||||||
Sbjct 309 ATTAGTCGGTATCAAACGGTCA-TTTGCT-TTCATTGAGAACGAAGAAGAAGAAGAACAA 366
Query 352 ---TCTGATAATATTT-----G-TTTATCTGATGATGAAGAAG--CTTT-A-AAGTATAA 398
|| ||||||| | | ||| |||||||| |||||| | | | || || ||
Sbjct 367 GAATCCGATAATAATAACAACGGTTTGTCTGATGAAGAAGAAAAACCTCCACAA-TACAA 425
Query 399 TTGGTTCATGGATGAAATTAGCCTCCCACAAACAGTAGCGA-ATACTGATTGGGTTTTAT 457
||||||| |||||||||||||||||||| ||||| | | |||||||||||||||| |
Sbjct 426 TTGGTTCTTGGATGAAATTAGCCTCCCATTGACAGTT-CTAGATACTGATTGGGTTTTGT 484
Query 458 GCCATATTTTTGGCAAGAAGACTAAACCCGAA 489
| ||||| ||| | ||||| |||||| |||
Sbjct 485 GTCATATCTTTAACGAGAAGGTTAAACCTGAA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5