BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56530.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486095 jgi|Araly1|486095|fgenesh2_kg.5__2087__AT3G56530.1 773 0.0
> Ahg486095 jgi|Araly1|486095|fgenesh2_kg.5__2087__AT3G56530.1
Length=906
Score = 773 bits (418), Expect = 0.0
Identities = 521/571 (91%), Gaps = 6/571 (1%)
Strand=Plus/Plus
Query 104 CTTCTTCTGCCGCTGATAATTTCTTTTCTTGGTCGACGAAACAGTTTGCTTTCCCGCCAG 163
||||||||||||||||||| ||||||||| ||||||||| | ||| | |||||||||||
Sbjct 71 CTTCTTCTGCCGCTGATAACTTCTTTTCTCCGTCGACGAACCCGTTCGTTTTCCCGCCAG 130
Query 164 GTTATAGATTTGTACCAAAGGACCAAGAACTCATCTTTCATTACTTGAAACCCTTTTCGC 223
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 131 GTTATAGATTTGTACCAAATGACGAAGAACTCATCTTGCATTACTTGAAACCCTTCTCGC 190
Query 224 AAGGCAATAAATGCTCATTGCTCAATGTTCCTATCCATCGTGTGAACATCTACGAGTCAA 283
||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 191 AAGGCAACAAATGCTCATTTCTCAATGTTCCTATCAATCACGTGAACATCTACGAGTCAA 250
Query 284 ATCCACAACATCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGATTGGTTCTATATAT 343
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 251 ATCCACAACAGCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGAATGGTTCTTTATAT 310
Query 344 CGGAGAGGACCAAGACCGGT-AAGGCTGGAAGAAGTAATAAACGTGTCGACAATGGAGGA 402
||||||||||||||| |||| ||| ||||||||| ||| |||||||||| ||||||||||
Sbjct 311 CGGAGAGGACCAAGATCGGTGAAG-CTGGAAGAAATAAGAAACGTGTCGCCAATGGAGGA 369
Query 403 TATTGGAGCGCAACTGTAGCTGCCCAAAAG-ATCAACGCTGGAAATGGCATAGTCGGCTA 461
||||||| ||||||||||||| || || || || |||||||||||||||||||||||||
Sbjct 370 TATTGGAACGCAACTGTAGCTACC-AAGAGGATTGACGCTGGAAATGGCATAGTCGGCTA 428
Query 462 CAAGA-CTTCACTAGAGTACTATGTTGGGAAACAATCAAATAGTGTCAAAGGGGATTGGT 520
||| | || ||||||| ||||| |||||||||||| | ||| |||| |||||||||||||
Sbjct 429 CAAAATCT-CACTAGAATACTACGTTGGGAAACAACCCAATGGTGTAAAAGGGGATTGGT 487
Query 521 TAATGCAAGAGTACTGGTTTGAGTCTTCTGATGATAACAACAACGAGAAGGTGGATCATG 580
||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 488 TAATGCATGAATACTGGTTTGAGTCTTCAGATGATAACAACAACGAGAAGGTAGATCATG 547
Query 581 CTTTGTGCAAGATTTATCTGACTCCAGCGGCAGCAaagaagaagaaagctgaggaagcag 640
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 548 TTTTGTGCAAGATTTATCTGACTCCAACGGCAGCAAAGAAGAAGAAAGCAGAGGAAGAAG 607
Query 641 agaatgagaagctgaagaaagaagaagaCGT 671
||||||||||||||||||||||||||| |||
Sbjct 608 AGAATGAGAAGCTGAAGAAAGAAGAAGTCGT 638
Score = 91.6 bits (49), Expect = 9e-18
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5