BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56530.1 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg486095 jgi|Araly1|486095|fgenesh2_kg.5__2087__AT3G56530.1 773 0.0 > Ahg486095 jgi|Araly1|486095|fgenesh2_kg.5__2087__AT3G56530.1 Length=906 Score = 773 bits (418), Expect = 0.0 Identities = 521/571 (91%), Gaps = 6/571 (1%) Strand=Plus/Plus Query 104 CTTCTTCTGCCGCTGATAATTTCTTTTCTTGGTCGACGAAACAGTTTGCTTTCCCGCCAG 163 ||||||||||||||||||| ||||||||| ||||||||| | ||| | ||||||||||| Sbjct 71 CTTCTTCTGCCGCTGATAACTTCTTTTCTCCGTCGACGAACCCGTTCGTTTTCCCGCCAG 130 Query 164 GTTATAGATTTGTACCAAAGGACCAAGAACTCATCTTTCATTACTTGAAACCCTTTTCGC 223 ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||| Sbjct 131 GTTATAGATTTGTACCAAATGACGAAGAACTCATCTTGCATTACTTGAAACCCTTCTCGC 190 Query 224 AAGGCAATAAATGCTCATTGCTCAATGTTCCTATCCATCGTGTGAACATCTACGAGTCAA 283 ||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||| Sbjct 191 AAGGCAACAAATGCTCATTTCTCAATGTTCCTATCAATCACGTGAACATCTACGAGTCAA 250 Query 284 ATCCACAACATCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGATTGGTTCTATATAT 343 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 251 ATCCACAACAGCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGAATGGTTCTTTATAT 310 Query 344 CGGAGAGGACCAAGACCGGT-AAGGCTGGAAGAAGTAATAAACGTGTCGACAATGGAGGA 402 ||||||||||||||| |||| ||| ||||||||| ||| |||||||||| |||||||||| Sbjct 311 CGGAGAGGACCAAGATCGGTGAAG-CTGGAAGAAATAAGAAACGTGTCGCCAATGGAGGA 369 Query 403 TATTGGAGCGCAACTGTAGCTGCCCAAAAG-ATCAACGCTGGAAATGGCATAGTCGGCTA 461 ||||||| ||||||||||||| || || || || ||||||||||||||||||||||||| Sbjct 370 TATTGGAACGCAACTGTAGCTACC-AAGAGGATTGACGCTGGAAATGGCATAGTCGGCTA 428 Query 462 CAAGA-CTTCACTAGAGTACTATGTTGGGAAACAATCAAATAGTGTCAAAGGGGATTGGT 520 ||| | || ||||||| ||||| |||||||||||| | ||| |||| ||||||||||||| Sbjct 429 CAAAATCT-CACTAGAATACTACGTTGGGAAACAACCCAATGGTGTAAAAGGGGATTGGT 487 Query 521 TAATGCAAGAGTACTGGTTTGAGTCTTCTGATGATAACAACAACGAGAAGGTGGATCATG 580 ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 488 TAATGCATGAATACTGGTTTGAGTCTTCAGATGATAACAACAACGAGAAGGTAGATCATG 547 Query 581 CTTTGTGCAAGATTTATCTGACTCCAGCGGCAGCAaagaagaagaaagctgaggaagcag 640 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 548 TTTTGTGCAAGATTTATCTGACTCCAACGGCAGCAAAGAAGAAGAAAGCAGAGGAAGAAG 607 Query 641 agaatgagaagctgaagaaagaagaagaCGT 671 ||||||||||||||||||||||||||| ||| Sbjct 608 AGAATGAGAAGCTGAAGAAAGAAGAAGTCGT 638 Score = 91.6 bits (49), Expect = 9e-18 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5