BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56570.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486098 jgi|Araly1|486098|fgenesh2_kg.5__2090__AT3G56570.1 1297 0.0
> Ahg486098 jgi|Araly1|486098|fgenesh2_kg.5__2090__AT3G56570.1
Length=1557
Score = 1297 bits (702), Expect = 0.0
Identities = 764/795 (96%), Gaps = 0/795 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACAAGGAGATTAAGAGCATTCAAGAGATGGATGCAAGCTAACGGCGTTGATTGC 60
|||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1 ATGGCCACAAGGAGGTTAAGAGCATTCAAGAGATGGATGAAAGCTAACGGAGTTGATTGC 60
Query 61 AGCGAAGCTCTCAACCTCGTCGACGACGAAAACGATGGTGTCTCTGTGAGAGCATTCTGC 120
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGCGACGCTCTCAACCTCGTCGACGACCAAAACGATGGTGTCTCTGTGAGAGCATTCTGC 120
Query 121 GATTTGAAGGAAGGAGATGTTGTTGCCAATATCTCAAAAACTGCTTGTCTCACTATCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTGAAGGAAGGAGATGTTGTTGCCAATATCTCAAAAACTGCTTGTCTCACTATCAAA 180
Query 181 ACCAGTGGAGCTCGTGAGATGATCGAATCTGCTGATTTAGATGGAAGTTTAGGTCTCTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCAGTGGAGCTCGTGAGATGATCGAATCTGCTGATTTAGATGGAAGTTTAGGTCTCTCT 240
Query 241 GTGGCTCTCATGTACGAGAGAAGCTTAGGTGAAGAATCTCCTTGGGCTGGTTATCTTCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GTGGCTCTCATGTACGAGAGAAGCTTAGGTGAAGAATCTCCTTGGGCTGGTTACCTTCAG 300
Query 301 ATTCTTCCTATTCAAGAAGATTTGCCTCTTGTTTGGTCTCTTGAAGACTTAGATTCTCTC 360
||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 301 ATTCTTCCTGTTCAAGAAGATTTGCCTCTTGTTTGGTCTCTTCAAGACTTGGATTCTCTC 360
Query 361 TTATCTGGAACTGAGCTTCATAAGTTGGTGAAGGAAGATCATGTTCTTATATATGAGGAT 420
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 361 TTATCTGGAACTGAGCTTCATAAGGTGGTGAAGGAAGATCATGTTCTTATATATGAAGAT 420
Query 421 TGGAAAGAAAACATTTTGCCGCTTACCTCTTCACTGCCTCAGAATGTTGATTCTGATTCG 480
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAAAGAAAACATATTGCCACTTACCTCTTCACTGCCTCAGAATGTTGATTCTGATTCG 480
Query 481 TTTGGAATCAAAGAGTATCTTGCTGCTAAGAGTTTAATTGCTTCACGGTCTTTCGAAATC 540
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 481 TTTGGAATTAAAGAGTATCTTGCTGCGAAGAGTTTAATTGCTTCACGGTCTTTCCAGATC 540
Query 541 GATGATTACCATGGATCCGGGATGGTTCCTCTTGCAGACCTCTTTAATCATAAAACTGGG 600
||||| || |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 541 GATGACTATCATGGATCAGGGATGGTTCCTCTTGCAGATCTCTTCAATCATAAAACTGGG 600
Query 601 GCAGAAGACGTTCACTTCACTCATGAATCCGATTCTGAAGCTGATGAATCTGACAACGAT 660
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 601 GCAGAAGACGTTCATTTCACTCATGAATCCGATACTGAAGCTGATGAATCTGAAAACGAT 660
Query 661 GATGCTGCAAATGAGACCACTGATGAAGACGAGCCTTCCAGTAAAATTTCTTCCTCGCCT 720
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GATGCTGCAAATGAGGCCACCGATGAAGACGACCCTTCCAGTAAAATTTCTTCCTCGCCT 720
Query 721 GAGCAGTCTTTTGAGGAAGTTCCTGGTGAAAACACTGATGACGAAGCCAaagaagaagaa 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCAGTCTTTTGAGGACGTTCCTGGTGAAAACACTGATGACGAAGCCAAAGAAGAAGAA 780
Query 781 gaagaagaagaagaa 795
|||||||| || |||
Sbjct 781 GAAGAAGACGACGAA 795
Score = 1240 bits (671), Expect = 0.0
Identities = 750/788 (95%), Gaps = 6/788 (1%)
Strand=Plus/Plus
Query 815 aagaagaaggagaagaggaagaagaaAACTCTTCAATGCTGCAAAATGATCAATCCGGTC 874
||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 770 AAGAAGAAGAAGAAGAAGACGACGAAAACTCTTCAATGCTGCAAAATGATCAATCCGGTC 829
Query 875 TAAAAATGATTATGGTGAAGGATGTCTCAGCTGGAGCTGAGGTATTCAATACATACGGTT 934
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 830 TAAAAATGATTATGGTGAAGGATGTCTCAGCTGGAACTGAGGTATTCAATACATACGGTT 889
Query 935 TGATGGGTAATGCTGCATTACTCCACAGGTACGGATTTACAGAGCTCGATAATCCATATG 994
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 890 TGATGGGTAATGCTGCGTTACTCCACAGGTACGGATTTACAGAGTTCGATAATCTATACG 949
Query 995 ACATAGTAAACATAGATCTAGAATTAGTAACCGAATGGAGCACATCCTCATTCACAAGCC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACATAGTAAACATAGATCTAGAATTAGTAACCGAATGGAGCACATCCTCATTCACAAGCC 1009
Query 1055 GGTACACTCGAGCTAGACTGGCCTTGTGGAGAAAACTAGGTTACACAGGATGCGAGAGTC 1114
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1010 GGTACACTCGAGCTAGACTGGCCTTGTGGAGAAAACTAGGCTACACAGGATGCGAGAGTC 1069
Query 1115 AAAACTCAGAATACTTTGAGGTATCTTCAACCGGAGAACCCCAAACCGAGCTCCTGATCC 1174
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAAACTCAGAATACTTCGAGGTATCTTCAACCGGAGAACCCCAAACCGAGCTCCTGATCC 1129
Query 1175 TACTCTATATACTGCTCTTACCAGACGACACATACAATAAACTGGATCTAGCTGAATCAA 1234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1130 TACTCTATATACTGCTCTTACCAGATGACACATACAATAAACTGGATCTAGCTGAATCAA 1189
Query 1235 CAACAGGAGCTTCTCCCTCGAAAGAAGG-A-A-AAA---GATCTTCTTCTTACGAGATAA 1288
|||||||||| |||| ||| |||||||| | | ||| |||||||||||||||||||
Sbjct 1190 CAACAGGAGCGTCTCTCTCCAAAGAAGGAAGAGAAACTTCTTCTTCTTCTTACGAGATAA 1249
Query 1289 CAATTGGGAAACACAAGTTTGTGTATGGAGAAAGCGGAAATGATATTCTTCTGACAGATG 1348
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1250 CAATTGGGAAACACAAGTTTGTGTTTGGACAAAGCGGAAACGATATTCTTCTGACAGATG 1309
Query 1349 GTGTTTGTGAAGCTCTTCTAACTATTGTGGATAAGCGAGAGAGTTTATATGGATCATTGA 1408
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1310 GTGTTTGTGAAGCTCTTCTAACTATTGTGGATAAACGAGAGAGCTTATATGGATCATTAA 1369
Query 1409 GCTCATTGGAAGATGACATTGTTAGGGTGAAGACTTGTTGTCTTCCGAGAGACAGGAGAC 1468
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1370 ACTCATTGGAAGATGACATTGTTAGGCTCAAGACTTGTTGTCTTCCGAGAGACAGGAGAC 1429
Query 1469 TATATCATTCGCTTGTGTTGCGTGTGAGTGAGAGGAAGATTCTAAAGAAGCTTAGGAGCT 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TATATCATTCGCTTGTGTTGCGTGTGAGTGAGAGGAAGATTCTAAAGAAGCTTAGGAGCT 1489
Query 1529 ACATCCATACCCAGACCAATGAGTCTTCCAGCGGAAAGCGCCGGAAGAAGATGGTTCCAA 1588
|||||||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1490 ACATCCATACAAAGGCCAATGAGTTTTCCGGCGGAAAGCGCCGGAAGAAGATGCTTCCAA 1549
Query 1589 AATCCTAG 1596
||||||||
Sbjct 1550 AATCCTAG 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5