BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56590.2
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324170 jgi|Araly1|324170|fgenesh1_pm.C_scaffold_5001714 1247 0.0
Ahg938107 jgi|Araly1|938107|scaffold_502298.1 200 3e-50
> Ahg324170 jgi|Araly1|324170|fgenesh1_pm.C_scaffold_5001714
Length=1758
Score = 1247 bits (675), Expect = 0.0
Identities = 733/761 (96%), Gaps = 3/761 (0%)
Strand=Plus/Plus
Query 221 TTTCTCTGTGAATGAATCTCTGTTTGTTATGGGGAAGAATACCGTCGAGGAGCAGAATCT 280
||| ||||||||||||||| |||||||||||||||| ||||||| || ||||||||||||
Sbjct 903 TTTTTCTGTGAATGAATCTGTGTTTGTTATGGGGAAAAATACCGACGCGGAGCAGAATCT 962
Query 281 CCCTGTGAGCGACGGAGCTGCTTCGGCTAGGAATAACGGAGGTGGAGGAATAAGCACATG 340
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 963 CCCTGTGAGCGACGGAGCTGCTTCGGCTAGGAATAACGGA---GGAGGAAGAAGCAGATG 1019
Query 341 TTGTTGCTGCGATTGGATCTCTAGCTACTTTAGTCTCAGATGCGTTTTGATTCTTGCTTT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTGTTGCTGCGATTGGATCTCTAGCTACTTTAGTCTCAGATGCGTTTTGATTCTTGCTTT 1079
Query 401 TTCTGCTGCTGTGTTTCTCTCCGCCTTGTTTTGGTTACCTCCATTCCTCGGATTTGCAGA 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTCTGCTGCTGTGTTTCTCTCCGCCTTGTTTTGGTTACCTCCATTCCTCGGATTTGCAGA 1139
Query 461 TCCAGGGGATCTAGATCTCGATCCAAGGTTTAAAGATCACAGAATAGTGGCGAGTTTTGA 520
|| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 TCGAGAGGATCTAGATCTCGATCCAAGGTTTAAAGATCACAGAATTGTGGCGAGTTTTGA 1199
Query 521 TGTTGGAAAACCAATTTCGTTCATGGAAGACAATTTGATGCAGCTTGAGAATGATATCAC 580
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1200 TGTTGGAAAACCAGTTTCGTTCATGGAGGACAATTTGCTGCAGCTTGAGAATGATATCAC 1259
Query 581 TGATGAAATAAGCTTTCCCATGACCAAAGTTGTGGTATTAGCGCTTGAACGCTTGGGTGA 640
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1260 CGATGAAATAAGCTTTCCCATGACAAAAGTTGTGGTATTAGCGCTTGAACGATTGGGTGA 1319
Query 641 TCTTAACAGAACAATGGTTATTTTTGCCATTGATCCTGAGAAGGAGAATTCTAAGATACC 700
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 TCTTAACAGAACAATGGTTATTTTTGCCATTGATCCCGAGAAGGAGAATTCTAAGATACC 1379
Query 701 TGCCGAAATAGAGAGTCTGATCAAGGCAGCTTTTGAAACTCTGGTCCAAAAGCAGTTGTC 760
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1380 TGCCGAAATAGAGAGTCTGATCAAGGCAGCTTTTGAAACACTGGTCCAGAAGCAGTTGTC 1439
Query 761 TTTCCGTTTGACTGAATCCTTGTTTGGGGAACCATTCTTTTTCGAGGTGCTAAAATTCCC 820
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCTCCGTTTGACTGAATCCTTATTTGGGGAACCATTCTTTTTCGAGGTGCTAAAATTCCC 1499
Query 821 TGGAGGAATCACTGTGATCCCTCCCCAGCCTATATTTCCCCTGCAGAAGGCCCAACTTCT 880
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 TGGAGGAATCACTGTGATCCCTCCCCAGCCTATATTTCCCCTGCAGAAGGCGCAACTTCT 1559
Query 881 TTTCAACTTCACATTAAACTTTTCGATTTACCAAATTCAATCAAACTTTGAGGAACTCGC 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTTCAACTTCACATTAAACTTTTCGATTTACCAAATTCAATCAAACTTTGAGGAACTCGC 1619
Query 941 TAGCCAGCTGAAGAAGGGCATAAATCTGGCTTCCTATGAGA 981
||||||||||||||||||||||||||||||| |||||||||
Sbjct 1620 TAGCCAGCTGAAGAAGGGCATAAATCTGGCTCCCTATGAGA 1660
Score = 165 bits (89), Expect = 1e-39
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1008 AGAGGTTCAACAGTGGCGCCTCCTACTATAGTTCATTCTTCTGTTCTACTCACATTCGGT 1067
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1658 AGAGGTTCAACAGTGGCGCCCCCTACTATAGTTCATTCTTCTGTTCTGCTTACATTCGGT 1717
Query 1068 TCATCTTCGAGGTTGAAGCAACTTGCTCAAACTATCACTAG 1108
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TCGTCTTCGAGGTTGAAGCAACTTGCTCAAACTATCACTAG 1758
> Ahg938107 jgi|Araly1|938107|scaffold_502298.1
Length=239
Score = 200 bits (108), Expect = 3e-50
Identities = 145/163 (89%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 431 TTGGTTACCTCCATTCCTCGGATTTGCAGATCCAGGGGATCTAGATCTCGATCCAAGGTT 490
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 63 TTGGTTACCTCCATTCCTCGGATTTGCAGAACGAGGGGATCTTGATCTCGATCCAAGGTT 122
Query 491 TAAAGATCACAGAATAGTGGCGAGTTTTGATGTTGGAAAACCAATTTCGTTCATGGAAGA 550
|||||||||||||||| ||| || ||| ||||||| ||||| | |||| |||||||| ||
Sbjct 123 TAAAGATCACAGAATAATGGTGACTTTCGATGTTGAAAAACTAGTTTCATTCATGGAGGA 182
Query 551 CAATTTGATGCAGCTTGAGAATGATATCACTGAT-GAAATAAG 592
|||||| ||||||||||||| |||||||| ||| ||| ||||
Sbjct 183 AAATTTGCTGCAGCTTGAGAACGATATCACCGATTGAAGTAAG 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5