BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56600.1
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938620 jgi|Araly1|938620|scaffold_502811.1 2473 0.0
> Ahg938620 jgi|Araly1|938620|scaffold_502811.1
Length=1653
Score = 2473 bits (1339), Expect = 0.0
Identities = 1536/1633 (94%), Gaps = 5/1633 (0%)
Strand=Plus/Plus
Query 409 aaaaaaaaGGTTTGGCATGAACTGTATGGCCGTCGCTCTCGATCCACTAACCGACCGGTT 468
|||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||| | |
Sbjct 6 AAAAAAAAAGTTTGGCATGAACTGTATGTCCGTGGCTTTCGATCCACTAACCGACCAGCT 65
Query 469 TTCGCAGTTTAGCCGATCTTCACAGAGATGTAGACTCCAATCTTTAACCAACCTTGACTT 528
| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 66 TGCGCAGTTTAGCCGATCTTCACAAAGATGCAGACTCCAATCGTTAACCAACCTCGACTT 125
Query 529 CAACTTTCTCGGATTCAACACTAAACAAACCAATCTCTCTGCTTCCTCACACTCCTTGAA 588
|||||||| || ||||||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 126 TAACTTTCTTGGTTTCAACACTAAACAAACCAATATCCCTGCTTCTTCACATTCCTTGAA 185
Query 589 CAACCGAAGCGTTTCTACTCCATGCTTCTCCATATCCGGTAGTAATCTAGATGGCTCTGC 648
| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 CCACCGAAGTGTATCTACTCCATGCTTCTCCATATCCGGTAGTAATCTAGATGGCTCTAC 245
Query 649 TACTCCGCACATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGTTCCCTTGTAGC 708
| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 246 TGCTCCGCGCATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGCGCCCTTGTAGC 305
Query 709 TGAAGTAACCATAGCTATCGTTTCTGGAGCTCAGCCTCTGCTTTTACCAAGTGGTTTAGG 768
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 306 TGAAGTAACCATAGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGTTTAGG 365
Query 769 AGGTGCATATCTCTTGCAAACCGAAAAAGGTAACAACATTGCGGTTGCAAAACCAGTCGA 828
|||||| |||||||||||||||| ||| ||| ||||||||||||||||||| ||||| ||
Sbjct 366 AGGTGCTTATCTCTTGCAAACCGGAAATGGTCACAACATTGCGGTTGCAAAGCCAGTAGA 425
Query 829 TGAAGAGCCTTTAGCTTTCAACAATCCTAAAGGATCTGGCGGTTTAACACTCGGGCAACC 888
|||||||||||||||||| |||||||||||||||||||| || || || || || |||||
Sbjct 426 TGAAGAGCCTTTAGCTTTTAACAATCCTAAAGGATCTGGTGGATTGACGCTAGGACAACC 485
Query 889 AGGCATGAAACGGTCTATCCGCGTTGGTGAAAGCGGAATCCGTGAATTGGCTGCTTACCT 948
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGGGATGAAACGGTCAATCCGCGTTGGTGAAAGCGGAATCCGTGAATTGGCTGCTTACCT 545
Query 949 TTTAGACCACCAAGGCTTTTCCAGTGTTCCACCAACCGCATTGGTCAGAATCTCTCATGT 1008
|||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct 546 TTTAGACCACCAAGGCTTTTCCGGGGTTCCACCAACTGCATTGGTCAGAATCTCGCATGT 605
Query 1009 TCCGTTCCATGA-CAGAGGTAGTGATCACGCCGCCTATAAAGTTGCCTCTTTGCAACGAT 1067
|||||||||| | ||| | ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 606 TCCGTTCCAT-ATCAGTGATAGTGATCACGCCGCCTGTAAAGTTGCTTCTTTGCAACGAT 664
Query 1068 TTGTGGGTCATGATTTTGATGCAGGAGAGCTTGGACCAGGAAGCTTCACGGTTGTATCGG 1127
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 665 TTGTGGGTCATGACTTTGATGCAGGAGAGCTTGGATCAGGAAGCTTCACGGTTGGATCTG 724
Query 1128 TCCATAGGATTGGTATACTTGATGTGAGAGTCTTGAACCTTGACAGACACGCCGGAAACA 1187
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 725 TCCATAGGATTGGCATACTTGATGTGAGAGTCTTGAACCTTGACAGACACGCTGGAAACA 784
Query 1188 TGTTGGTGAAGAAGATACATGACCAAGATGAGACTACTTGTTCTAACGGAGTTGGAGCTG 1247
||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct 785 TGTTGGTGAAGAAGATACATGACCAAGATGAGAGTACTTGTTATAATGGAGTTGGAGCCG 844
Query 1248 CAGAGCTTGTGCCTATAGATCATGGTCTTTGCCTACCTGAATGCCTCGATGATCCTTATT 1307
| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 845 CTGAGCTCGTGCCTATAGATCATGGTCTTTGCCTACCCGAATGCCTTGACGATCCTTATT 904
Query 1308 TCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCGACATTGAGCTTCAGTATA 1367
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 905 TCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCGACACTGAGCTTCAGTATA 964
Query 1368 TATCAAACTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGAACAGAACTAGACTCTATAC 1427
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 965 TATCAAACTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGAACCGAACTAGGCTCAATAC 1024
Query 1428 AGGAATCTTCCCTACGGGTTCTTATCGTCTGCACGATATTCTTGAAAGAAGCTGCTGCTG 1487
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1025 AGGAATCTTCCCTACGGGTTCTCATCGTCTGCACGATATTCTTGAAACAAGCTGCTGGTG 1084
Query 1488 CAGGGCTTAGTCTTGCAGAGATAGGAGAGAAGATGACTCGGGACATATGCAGAGGGGAAG 1547
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1085 CAGGGCTTAGTCTTGCAGAGATAGGAGAGAAGATGACTCGGGACATCTGCAGAGGGGAAG 1144
Query 1548 AGAGTTCTAGTGTGTTGGAGATTCTTTGCAACAAAGCAAAAGCAAGCGCGGTTAGTGGAA 1607
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGAGTACTAGTGTGTTGGAGATTATTTGCAACAAAGCAAAAGCAAGCGCGGTTAGTGGAA 1204
Query 1608 GTGACGATGATGATGATTATAGTAGTGAATGGAATGAAGTAGAAGCAGAGCTAGAGTGTG 1667
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1205 CTGAC---GATGATGATTATAGTAGTGAATGGAATGAAGTAGAAGCAGAACTAGAGTGTG 1261
Query 1668 GAATTTTTCAGTTTGACGATGAAGTTGAATGCAAAGAGCTTCCAGATATGTTACAAGTGC 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GAATTTTTCAGTTTGACGATGAAGTTGAATGCAAAGAGCTTCCAGATATGTTACAAGTGC 1321
Query 1728 CTATATTCACAAGAGTTCCATCCATTGCTGCCAATCTATCTGCTCTCATGCGGTGTCCAC 1787
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1322 CTTTATTTACAAGAGTTCCATCCATTGCTGCGAATCTATCCGCTCTCATGCGGTGTCCAC 1381
Query 1788 CAAACCAGTGGATTAGTACATATGACACTAACATAGAAGAGGAAAGGAGAGATCGGAGTA 1847
||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 1382 CAAACCAGTGGATTACTACATGTGACACTAACAGAGAAGAGGACAGGAGAGATCGGAGTA 1441
Query 1848 TCGTGAGGAGCAAGAGTCACCCGATATGTGTGAATTATGATGAGAAAGAAGGTGTTTATT 1907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1442 TCGTGAGGAGCAAGAGTCACCCGATATGTGTGAATTATGATGAGAAAGAAGGTGTTCATT 1501
Query 1908 TTGGGGACATGAGTGGAGATGAATGGGAGATGTTCTTGCATAGTTTCCAGATGCTTTTGC 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TTGGGGACATGAGTGGAGATGAATGGGAGATGTTCTTGCATAGTTTCCAGATGCTTTTGC 1561
Query 1968 CAGAAGCACTTGAAGGCTCAACAAGCAAGGGACCAAAACCAAGATTTGGATCTTCTTGTA 2027
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 1562 CAGAAGCACTTGAAGGCTCAACAAGCAAGGGGCCAAAGCCAAGATTTGGATCTTCCTGCA 1621
Query 2028 AATTCTAAGGAAA 2040
|||||||| ||||
Sbjct 1622 AATTCTAATGAAA 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5