BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G56610.1

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486103 jgi|Araly1|486103|fgenesh2_kg.5__2095__AT3G56610.1         388    2e-107


> Ahg486103 jgi|Araly1|486103|fgenesh2_kg.5__2095__AT3G56610.1
Length=407

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 329/383 (86%), Gaps = 21/383 (5%)
 Strand=Plus/Plus

Query  6    ATACATCATGGCCCTCAAAGCAACTATGGTCACCAAATCCATGTTTGCAGCCTTATTCAC  65
            |||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||
Sbjct  1    ATACATCATGTCCCTCAAAGCAACTACCGTCACCAAATCCATGTTTGTAGCCTTATTCAC  60

Query  66   AATTATCGCGATGGCTACATTGGCATCTGCAGCCTCCGGTTTGGCTCAGTCTCCAGAATC  125
            ||||||||| |||||| ||||||||||||||||  || |||||| |||||||||||||||
Sbjct  61   AATTATCGCCATGGCTGCATTGGCATCTGCAGCGACCAGTTTGGTTCAGTCTCCAGAATC  120

Query  126  AGACCACTTGGTTAACAAATGTATGGCTAAGTTATCTTCAAGGTGTGCGATGTATGTCAC  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGACCACTTGGTTAACAAATGTATGGCTAAGTTATCTTCAAGGTGTGCGATGTATGTCAC  180

Query  186  GGATGCAA-T-CTGTACTATTCATGGTCCGATGAGACTAAAACATCATGGATGTTGTCTA  243
             |  | || | ||||| ||  ||||||||| ||| || ||  || |  ||||||||||||
Sbjct  181  TGCCG-AAGTACTGTA-TAGCCATGGTCCGTTGAAAC-AA--CA-C--GGATGTTGTCTA  232

Query  244  GAAGTTTTTCACATGGGACGTGCTTGTCTTAAAATCGTAACGAATCATGTAATCCAAATG  303
            ||||||| |||||||||||||| ||||||||| ||||| || || ||||||||||| | |
Sbjct  233  GAAGTTTATCACATGGGACGTGTTTGTCTTAACATCGTGACCAAACATGTAATCCAGACG  292

Query  304  TTTTTGCCCAAGTTTGAAGGTGTTCGAAAACAATACTCTCTCGAGAAAAGTACATATATA  363
            |||||||||||| ||         ||||||||| ||||||| |||||||| ||| | |||
Sbjct  293  TTTTTGCCCAAGCTT---------CGAAAACAAGACTCTCTAGAGAAAAGCACACAAATA  343

Query  364  ATGCAA-CTTTGTGTTCCGGTTT  385
             ||  | ||||||||||||||||
Sbjct  344  -TGGTATCTTTGTGTTCCGGTTT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18123904775


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5