BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56620.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486104 jgi|Araly1|486104|fgenesh2_kg.5__2096__AT3G56620.1 2148 0.0
> Ahg486104 jgi|Araly1|486104|fgenesh2_kg.5__2096__AT3G56620.1
Length=1435
Score = 2148 bits (1163), Expect = 0.0
Identities = 1358/1450 (94%), Gaps = 22/1450 (2%)
Strand=Plus/Plus
Query 1 GTTCGTAGGAAGAGCACAAGCCTCCACAAGTG-GTGTTGCC-CCTCTGTTCCTAACTCCT 58
|||||||||||||||||||||||||| ||||| ||||| || |||||||||||| ||||
Sbjct 1 GTTCGTAGGAAGAGCACAAGCCTCCAGAAGTGCGTGTT-CCTTCTCTGTTCCTAATTCCT 59
Query 59 TTCTCTTATATAAAATTGTGTATCCTCCATAC--ATACAACAAAGAGAGAAACTTTTGAT 116
| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 60 TCCTCTTATATAAAATTTTGTATCCTCCATACATATACAACAAGGAGAGAAACTTTTGAC 119
Query 117 ATGGGGTTAAAGATGTCAGAATCAGCCAAGCCTTACTTTGCAATGGTTTGTCTTCAATTC 176
|||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||
Sbjct 120 ATGGGGTTAAAGATGTCAGATTCAGCCAAACCCTACTTTGCAATGATTTGTCTTCAATTC 179
Query 177 GGATACGCCGGCATGAACCTCGTGACGAAGGTTGTGCTAGACCGCGGCATGAGCCATTAC 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 GGATACGCCGGCATGAACCTCGTGACTAAGGTTGTGCTAGACCGCGGCATGAGCCATTAC 239
Query 237 GTCCTTGTGGCTTACCGTAATGCCTTTGCCACGGCTGCTATCGCACCTTTTGCTCTACTC 296
|||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 240 GTCCTTGTTGCTTATCGTAACGCCTTTGCCACGGCCGCTATAGCACCTTTTGCTCTACTC 299
Query 297 TCCGAGAGGAAAGTGAGGCCGAAGATGACATTTCCAATATTCATGCAGATTTTTGTTCTA 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TCCGAGAGAAAAGTGAGGCCGAAGATGACATTTCCAATATTCATGCAGATTTTTGCTCTA 359
Query 357 GCTCTTCTCGGGCCTTTGATCGATCAAAATTTATATTACGCCGGTCTCAAACTTACTTCA 416
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GCTCTTCTAGGGCCTTTGATCGATCAAAACTTATATTACGCCGGTCTCAAACTTACTTCA 419
Query 417 CCAACTTTTGCCGGCGCAGTCACAAATATCGTTCCAGCTTTGACCTTTATCATTTCCATA 476
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 420 CCAACTTTTGCCGGCGCAGTCACCAATATCGTTCCTGCTTTGACCTATATCATTTCCATA 479
Query 477 ATTTGCAGGATGGAGAAGGTGGAGATGAGAAAAGTAAGATTCCAAGCAAAAGTGGTGGGG 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 ATTTGCAGGATGGAGAAGGTGGAGATGAGAAAAGTAAGATTCCAAGCCAAAGTGGTGGGG 539
Query 537 ACATTAGTGATAGTGGTTGGAGCCATGTTGATGATTTTATTCAAAATTCCTCTAATCACC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 ACATTAGTGATAGTGGTTGGAGCCATGTTGATGATTTTATTCAAAATTCCTCTAATCAGC 599
Query 597 TTTCTCCGATCTCACCTCACCGGCCATGCTTTGTCGCCGGCAGGTGAGGACTACCTCAAA 656
||||||||||||||||||||||||||| | | |||||||| ||||||| |||||||||
Sbjct 600 TTTCTCCGATCTCACCTCACCGGCCAT--TCT-TCGCCGGCCTGTGAGGATTACCTCAAA 656
Query 657 GCCACCGTCTTCCTCCTCATCGCCTCATTTTCTTGGGCTTCCTTTTTCGTTCTTCAGGCG 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCACTGTCTTCCTCCTCATCGCCTCATTTTCTTGGGCTTCCTTTTTCGTTCTTCAGGCG 716
Query 717 GCTACGTTGAAGAGATACTCATCTCACCTTTCATTATCGACGATGGTGTGTTTCATGGGC 776
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 717 GCTACGTTGAAGAGATACTCATCTCATCTTTCATTATCGACCATGGTGTGCTTCATGGGC 776
Query 777 ACGTTACAGTCCACAGCCTTAACGTTTGTGATGGAGCCAAACCTTTCTGCATGGAACATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACGTTACAGTCCACAGCCTTAACGTTTGTGATGGAGCCAAACCTTTCTGCATGGAACATT 836
Query 837 GGCTTTGACATGAACCTTCTTGCCTCTGCTTATGCGGGCATAATGTCGTCGAGCATAGCG 896
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 837 GGCTTTGACATGAACCTTCTCGCCTCTGCTTACGCGGGCATAATGTCGTCGAGCATAGCG 896
Query 897 TACTACGTTCAAGGAATGATGACGAAGCAAAAGAGTGTTATCTTTGTTACTGCTTTTAAT 956
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 897 TACTACGTTCAAGGAATGATGACGAAGCAAAAGAGTGTTGTCTTTGTTACTGCTTTTAAC 956
Query 957 CCTCTTGTTGTCATAATCGGATCCATCATTGGCTTCCTCATCCTCAACCAAACTTTAAAC 1016
||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 957 CCTCTTGTTGTTATAATCGGATCCATCATTGGCTTCCTCATCCTCGGCCAAAATTTATAC 1016
Query 1017 CTTGGCGGGGTTCTTGGAATGGCAATTTTAGTGGTGGGAGTTTGCACGGTTCTTTGGGGA 1076
||||||||||||||||||||||| || ||| | |||||||||||| ||||||| ||||||
Sbjct 1017 CTTGGCGGGGTTCTTGGAATGGCGATATTACTAGTGGGAGTTTGCGCGGTTCTATGGGGA 1076
Query 1077 AAGGAAGGAGATATCGATGAAGAAGAGAACATTGAGGAGAAGTTTGTAGAAATTGTCAAG 1136
|||||||||||| || | |||||||||||||||||||| ||| ||||| |||| ||
Sbjct 1077 AAGGAAGGAGAT---GA--A-GAAGAGAACATTGAGGAGAAATTTCTAGAAGTTGTTAAA 1130
Query 1137 TGTTGCAACCGCTGCGATATCAAGGTTCTCTCGATGATGCCAAGAATCGATGAGGAAGTA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGTTGCAACCGCTGCGATATCAAGGTTCTCTCGATGATGCCAAGAATCGATGAGGAAGTA 1190
Query 1197 GACGTTGAAATGCAATCCGCAGGAACAGCTAAAGTGGCGGTGGGTTTCTCGTAACCTCTC 1256
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1191 GACGTTGAAATGCAATCTGCAGGGACAGCTAAAGTGGCGGTGGGTTTCTCGTAACCTC-- 1248
Query 1257 GTGTGTGGAAAAAGATGTTCACGACCTTAATTAGATCTTTTCAAGTCtt-ttttttttAA 1315
|||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||
Sbjct 1249 GTGTGTGGAAAAAGATGTTCACGAGCTTAATTAGATCCTTTGAAGTCTTCTTTTTTTTTT 1308
Query 1316 CAA--AATTTTAGATAGAGGAGCAActttttctttgttctatatcattgctccaactttt 1373
|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1309 TTTTTAATTTTAGATAGAGGAGCAACTTTCTCTTTGTTGTATATCATTGCTTCAACTTTT 1368
Query 1374 tattttctttgtaggttttgttttATAATCTTCATTAGAAGGGTAATTATTATTATTAAA 1433
| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1369 TCTTTT-TTT--AGGTTTTGTTTTATAATCTTCATTAGAAGGGTAACTATTATTATTGAA 1425
Query 1434 TAAATGTTCC 1443
||||||||||
Sbjct 1426 TAAATGTTCC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5