BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56630.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324175 jgi|Araly1|324175|fgenesh1_pm.C_scaffold_5001719 2283 0.0
Ahg313950 jgi|Araly1|313950|fgenesh1_pm.C_scaffold_1002730 2069 0.0
> Ahg324175 jgi|Araly1|324175|fgenesh1_pm.C_scaffold_5001719
Length=1500
Score = 2283 bits (1236), Expect = 0.0
Identities = 1415/1503 (94%), Gaps = 6/1503 (0%)
Strand=Plus/Plus
Query 17 ATGGAGCATTTCATCCTCATCTCCCTCCTCTGTTTCCCTATCGTCATCTTCTTCATCTTC 76
||||||| ||||||| | |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAGCTTTTCATCTTTATCTTCCTCCTCTGTTTCCCTATCTTCATCTTCTTCATCTTC 60
Query 77 TTCCCCAAGAATTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTTGGAAGCTTA 136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 TTCCCCAAGAATTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTCGGAAGTTTA 120
Query 137 CCTGGTCTAGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAAACTCTGTCTCGA 196
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCTGGTCTTGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTGTCTCGA 180
Query 197 TGCCCAACCCAAACGGCGATTTTTCGGCGACCAGGGAAGCTGCAGTTCGTCATGACGGCG 256
|| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 181 TGTCCAACCCAAACGGCGATTTTCCGGCGACCAGGGAAGCAACAGTTCGTCATGACGGCG 240
Query 257 AATCCAGCTAACGTCGAGTATATGCTCAAGACGAAATTCGAAAGTTTCCCTAAAGGCGAA 316
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 241 AATCCAGCTAACGTCGAGTACATGCTCAAGACGAAATTCGAGAGTTTCCCTAAAGGCGAG 300
Query 317 CGGTTCATCTCGATTCTCGAGGATTTTCTCGGCCGCGGGATTTTTAACTCCGACGGTGAG 376
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CGGTTTATCTCGATTCTTGAGGATTTTCTCGGCCGCGGGATTTTTAACTCCGATGGTGAG 360
Query 377 ATGTGGTGGAAACAGAGGAAGACGGCCAGTTATGAATTCAGTACTAAATCTCTCCGTGAC 436
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 361 ATGTGGTGGAAACAGAGGAAGACTGCGAGTTATGAATTCAGTACTAAATCTCTCCGTGAC 420
Query 437 TTCGTTATGAGCAACGTCACCGTCGAAATCAACACTAGGCTTGTTCCAGTGTTAGCAGAA 496
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 TTTGTTATGAGCAACGTCACCGTCGAAATCAACACAAGGCTTGTTCCGGTGTTAGCAGAA 480
Query 497 GCTGCAACCAACGGAAAATTGATAGATCTTCAAGACATATTGGAGCGGTTCGCGTTCGAT 556
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 481 GCTGCAACCACCGGAAAATTGATAGATCTTCAAGACATATTGGAGCGATTCGCGTTTGAT 540
Query 557 AACATCTGTAAATTAGCTTTCAACGTTGATTCAGCTTGTCTCGGCGACGACGGAGCAGCC 616
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 541 AACATCTGCAAATTAGCCTTCAACGTTGATTCAGCTTGTCTCGGTGACGACGGAGCCGCC 600
Query 617 GGTGTAAACTTCATGCAGGCCTTTGAAACGGCGGCGACGATCATCTCGCAACGGTTTCAG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTGTAAACTTCATGCAGGCCTTTGAAACGGCGGCGACGATCATCTCGCAACGGTTTCAG 660
Query 677 TCTGTGATTTCGTATTCATGGAAGATTAAAAAGAAACTCAACATTGGATCAGAGAGAGTT 736
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 661 TCTGTGGTTTCGTATTCATGGAAGATTAAAAAGAAACTTAACATTGGATCAGAGAAAGTT 720
Query 737 CTGAGAGAATCAATCATGATCGTCCATAAATTCGCAGACGAGATCGTGCGTAACAGGATT 796
||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGAGAGAATCAATCGTGACCGTTCATAAATTCGCAGACGAGATCGTGCGTAACAGGATT 780
Query 797 GAACAAGGAAAGGTAA-GTGATCACAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGGA 855
|| ||||||| | | | |||| || |||||||||||||||||||||||||||||||||||
Sbjct 781 GATCAAGGAA-GATTATGTGACCAGAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGGA 839
Query 856 GGAGATGAATTCTCCGGAGATACTTCGTGATATTGTCATAAGTTTCATACTTGCAGGACG 915
|||||||||||| ||||||||||||||||| ||||||||||| ||||| || || |||||
Sbjct 840 GGAGATGAATTCGCCGGAGATACTTCGTGACATTGTCATAAGCTTCATTCTCGCGGGACG 899
Query 916 AGACACTACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTGCTCTCTATGCATCCAGAAGT 975
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 900 AGACACGACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAGGT 959
Query 976 G-AAAGATAAGATTCTACAAGAGCTAAACTCGATTCGAGAACGAACAGGGAAGCGAATCG 1034
| ||| | ||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 960 GGAAA-ACAAGATTCTACAAGAGTTAGACTCGATTCGAGCACGAACAGGGAAGCGAATCG 1018
Query 1035 GGGAAGTTTACGGGTTTGAAGATCTTAAACTGATGAATTATCTTCACGCAGCGATAACTG 1094
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1019 GGGAAGTTTACGGGTTTGAAGATCTTAAACTGATGAATTATCTGCATGCGGCGATAACTG 1078
Query 1095 AATCTCTACGATTGTATCCGCCAGTGCCAGTGGATACAATGAGTTGTGCTGAGGACAATG 1154
||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1079 AATCTTTAAGATTGTATCCGCCTGTGCCAGTGGACACAATGAGTTGTGCTGAGGACAATG 1138
Query 1155 TGTTGCCTGATGGGACATTTATAGGGAAAGATTGGGGGATAAGCTATAACGCGTATGCGA 1214
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1139 TGTTGCCTGATGGGACATTTGTAGGGAAATCTTGGGGGATAAGCTATAACGCGTATGCGA 1198
Query 1215 TGGGGAGGATGGAGAGTATTTGGGGGAAAGATTGCGATCGGTTTGATCCTGAGAGGTGGA 1274
|||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 1199 TGGGAAGGATGGAGAGTATTTGGGGTAAAGATTGTGATCGGTTTGATCCCGAGAGGTGGA 1258
Query 1275 TTGATGAAACAAATGGTGGTTTTAGAGGTGAGAATCCTTATAAGTTTCCTGCGTTTCATG 1334
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1259 TTAATGAAACAAATGGTGGTTTTAGAGGTGAGAATCCTTACAAGTTTCCTGCGTTTCACG 1318
Query 1335 CGGGACCAAGGATGTGTTTAGGGAAGGAGATGGCTTATATTCAGATGAAATCGATAGTCG 1394
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 CAGGACCAAGGATGTGTTTAGGGAAGGAGATGGCTTATATTCAGATGAAATCAATAGTCG 1378
Query 1395 CTGCGGTTTTAGAGAGGTTTGTGGTTGAGGTTCCAGGGAAGAAGGAGCGTCCTGAGATTC 1454
|||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 CTGCAGTTTTAGAGCGGTTTGTGGTTGAGGTTCCGGGGAAGAAGGAGCGTCCTGAGATTC 1438
Query 1455 TAATGTCGGTGACACTTAGAATCAGAGGAGGTTTGAATG-TGAGAGTACAAGAAAGATCT 1513
|| |||| ||||||||||||||||||||||||||| || |||| |||||||| ||||||
Sbjct 1439 TATTGTCAGTGACACTTAGAATCAGAGGAGGTTTGT-TGGTGAGGGTACAAGAGAGATCT 1497
Query 1514 TGA 1516
|||
Sbjct 1498 TGA 1500
> Ahg313950 jgi|Araly1|313950|fgenesh1_pm.C_scaffold_1002730
Length=1497
Score = 2069 bits (1120), Expect = 0.0
Identities = 1371/1493 (92%), Gaps = 13/1493 (1%)
Strand=Plus/Plus
Query 29 ATCCTCATCTCCCTCCTCTGTTTCCCTATCGTCATCTTCT-TCATCTTCTTCCCCAAGAA 87
||| |||||| ||||||||||||||||||| ||||||||| | ||||||||||| |||||
Sbjct 13 ATCTTCATCTTCCTCCTCTGTTTCCCTATCTTCATCTTCTAT-ATCTTCTTCCCGAAGAA 71
Query 88 TTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTTGGAAGCTTACCTGGTCTAGT 147
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 72 TTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTCGGGAGCTTTCCTGGTCTAGT 131
Query 148 GAATAACCGTCACCGATTCCTCGACTGGACGGTGGAAACTCTGTCTCGATGCCCAACCCA 207
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 132 GAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTGTCTCGATGTCCAACTCA 191
Query 208 AACGGCGATTTTTCGGCGACCAGGGAAGCTGCAGTTCGTCATGACGGCGAATCCAGCTAA 267
||| |||||||| |||| |||||||||| || || ||||||||||||||||| | ||
Sbjct 192 AACAGCGATTTTCCGGCTACCAGGGAAGAAACAACTCATCATGACGGCGAATCCATCCAA 251
Query 268 CGTCGAGTATATGCTCAAGACGAAATTCGAAAGTTTCCCTAAAGGCGAACGGTTCATCTC 327
|||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| | |||
Sbjct 252 CGTCGAGTATATGCTCAAGACGAAGTTCGAGAGTTTCCCTAAAGGCGAACAGTTTACCTC 311
Query 328 GATTCTCGAGGATTTTCTCGGCCGCGGGATTTTTAACTCCGACGGTGAGATGTGGTGGAA 387
| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 312 GGTTCTTGAGGATTTTCTCGGCCACGGGATTTTTAATTCCGACGGTGAGATGTGGTGGAA 371
Query 388 ACAGAGGAAGACGGCCAGTTATGAATTCAGTACTAAATCTCTCCGTGACTTCGTTATGAG 447
||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 372 ACAGAGGAAGACGGCAAGCTACGAATTTAGTACTAAATCTCTCCGTGACTTTGTTATGAG 431
Query 448 CAACGTCACCGTCGAAATCAACACTAGGCTTGTTCCAGTGTTAGCAGAAGCTGCAACCAA 507
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
Sbjct 432 CAACGTCACCGTCGAAATCAACACTAGGCTCGTTCCGGTGTTAGTAGAAGCTGCAACTAC 491
Query 508 CGGAAAATTGATAGATCTTCAAGACATATTGGAGCGGTTCGCGTTCGATAACATCTGTAA 567
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 492 CGGGAAATTGATAGATCTTCAAGATATATTGGAGCGATTCGCGTTCGATAACATCTGTAA 551
Query 568 ATTAGCTTTCAACGTTGATTCAGCTTGTCTCGGCGACGACGGAGCAGCCGGTGTAAACTT 627
|||||||||||| |||||| | |||||||||||| | |||||||| ||||||||||||||
Sbjct 552 ATTAGCTTTCAATGTTGATCCCGCTTGTCTCGGCAAAGACGGAGCCGCCGGTGTAAACTT 611
Query 628 CATGCAGGCCTTT-GAAACGGCGGCGACGATCATCTCGCAACGGTTTCAGTCTGTGATTT 686
||||| || |||| ||||| |||||||||||||| ||||||||||||| ||||||| ||
Sbjct 612 CATGC-GGGCTTTCGAAACCGCGGCGACGATCATATCGCAACGGTTTCGGTCTGTGGCTT 670
Query 687 CGTATTCATGGAAGATTAAAAAGAAACTCAACATTGGATCAGAGAGAGTTCTGAGAGAAT 746
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 671 CGTGTTCATGGAAGATTAAAAAGAAACTTAACATTGGATCAGAGAGAGTCCTGAGAGAAT 730
Query 747 CAATCATGATC-GTCCATAAATTCGCAGACGAGATCGTGCGTAACAGGATTGAACAAGGA 805
||||| || | |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 731 CAATCGCGA-CAGTCCATAAATTCGCAGACGAGATCGTGCGTAAGAGGATTGATCAAGGA 789
Query 806 AAGGT-AAGTGATCACAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGGAGGAGATGAA 864
|| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AA-ATCAAGTGACCAGAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGGAGGAGATGAA 848
Query 865 TTCTCCGGAGATACTTCGTGATATTGTCATAAGTTTCATACTTG-CAGGACGAGACACTA 923
||| ||||||||||| ||||| ||||||||||||||||| |||| | ||| ||||||| |
Sbjct 849 TTCGCCGGAGATACTCCGTGACATTGTCATAAGTTTCATCCTTGCCGGGA-GAGACACCA 907
Query 924 CTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTGCTCTCTATGCATCCAGAAGTGAAAGATA 983
||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 908 CTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAGGTGGAAGATA 967
Query 984 AGATTCTACAAGAGCTAAACTCGATTCGAGAACGAACAGGGAAGCGAATCGGGGAAGTTT 1043
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 968 AGATTCTACAAGAGCTAAACTCGATTCGAGCACGAACAGGGAAGCGAATCGGGGAAGTTT 1027
Query 1044 ACGGGTTTGAAGATCTTAAACTGATGAATTATCTTCACGCAGCGATAACTGAATCTCTAC 1103
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1028 ACGGGTTTGAAGATCTTAAACTGATGAATTATCTTCACGCTGCGATAACTGAATCTTTAA 1087
Query 1104 GATTGTATCCGCCAGTGCCAGTGGATACAATGAGTTGTGCTGAGGACAATGTGTTGCCTG 1163
|||||||||| || ||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1088 GATTGTATCCACCTGTGCCAGTGGACATAAAGAGTTGTGCTGAGGACAATGTGTTGCCTG 1147
Query 1164 ATGGGACATTTATAGGGAAAGATTGGGGGATAAGCTATAACGCGTATGCGATGGGGAGGA 1223
||||||||||| |||| |||| ||||| |||| ||||||| ||| ||| ||||| ||||
Sbjct 1148 ATGGGACATTTGTAGGTAAAGGTTGGGCAATAACCTATAACACGTTTGCCATGGGAAGGA 1207
Query 1224 TGGAGAGTATTTGGGGGAAAGATTGCGATCGGTTTGATCCTGAGAGGTGGATTGATGAAA 1283
||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1208 TGGAGAGTAGTTGGGGTAAAGATTGCGATCGGTTTGATCCCGAGAGGTGGATTAATGAAA 1267
Query 1284 CAAATGGTGGTTTTAGAGGTGAGAATCCTTATAAGTTTCCTGCGTTTCATGCGGGACCAA 1343
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CAAATGGTGCTTTTAGAGGTGAGAATCCTTATAAGTTTCCTGCGTTTCATGCGGGACCAA 1327
Query 1344 GGATGTGTTTAGGGAAGGAGATGGCTTATATTCAGATGAAATCGATAGTCGCTGCGGTTT 1403
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GGATTTGTGTAGGGAAGGAGATGGCTTATATTCAGATGAAATCGATAGTCGCTGCGGTTT 1387
Query 1404 TAGAGAGGTTTGTGGTTGAGGTTCCAGGGAAGAAGGAGCGTCCTGAGATTCTAATGTCGG 1463
||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 1388 TAGAGCGGTTTGTGGTTGAGGTTCC-GGG--GAAGGAGCGTCCTGAGATTCTATTGTCGA 1444
Query 1464 TGACACTTAGAATCAGAGGAGGTTTGAATGTGAGAGTACAAGAAAGATCTTGA 1516
|||||||||||||||||||||||||| || ||| ||||| || |||||||||
Sbjct 1445 TGACACTTAGAATCAGAGGAGGTTTGTTTGCGAGGGTACACGAGAGATCTTGA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5