BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56660.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722 2039 0.0
Ahg934911 jgi|Araly1|934911|scaffold_402899.1 388 6e-107
> Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722
Length=1899
Score = 2039 bits (1104), Expect = 0.0
Identities = 1678/1937 (87%), Gaps = 112/1937 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGAACCAGTTTTGGAGGACACTTATCTTACTTTCTCTTCCGATTTCGATTACATC 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 ATGGCGGAACCTGTTTTGGAGGACACTTATCTTACCTTCTCTTCCGATTTCGATTCCATC 60
Query 61 GCGATCGCTCCTTCTCCCTTTGATAATTTCTGCAATTCTAACTCTGATCAAGTTCGGAAC 120
||||| |||||||| | ||||| |||||||||||||||| ||| ||||||||| |||||
Sbjct 61 ACGATCCCTCCTTCTTCGTTTGACAATTTCTGCAATTCTAGCTCCGATCAAGTTGGGAAC 120
Query 121 TCGATCTCTGATCTGAGGTTTTTGAT---T---GACGAC---GAC---GA----CAG--T 162
|||||||||||||||||||||||||| | |||||| ||| || ||| |
Sbjct 121 TCGATCTCTGATCTGAGGTTTTTGATCGATGACGACGACGGGGACGGAGACTTCCAGTTT 180
Query 163 --TTC----GACGATCTCTACTTCCCTTCTGAGAACGAATCGTTCTG-CATTCCTCCTGA 215
||| ||||||||||||||||| || |||||||||| ||| | ||||||| |||
Sbjct 181 ACTTCAGAAGACGATCTCTACTTCCCCCCTAAGAACGAATCTTTC-GCCATTCCTGTTGA 239
Query 216 CGCTACGAAACGAGAAATGTCTGGTGACTTTACGCCGGCGTCGGGAA-TTTCAGGCGATT 274
|||| ||||||||||| ||||| |||||||||||||| |||| ||||||||||||
Sbjct 240 CGCT------CGAGAAATGTCCGGTGATTTTACGCCGGCGTC-GGAACTTTCAGGCGATT 292
Query 275 GTGTTAACGAAGACACGGAGAAGAATACGAATGGCGTGTTAATATCTACTTCAAGCTGCT 334
||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||| || ||
Sbjct 293 GTGTTAAAGAAGAAACGGAGAAGAATACCAATGGCGTGTTAATATCTACTCCAATCTACT 352
Query 335 ACAATAGAGAATCACCTACGGATTCTGAT-TTCTCCGGTACTAGTCAGAGCTTGAGTTTT 393
| |||| ||||| ||| |||||||||| | |||||||||| |||||||||||||||
Sbjct 353 GCGATAGGGAATCGCCTGGGGATTCTGATCGT-TCCGGTACTACTCAGAGCTTGAGTTTA 411
Query 394 TCGGGGCAAGATTCTGCCAAGAGGAAAACAGAGATTGAAGAAGATT--C---AAG---C- 444
|||| ||||| ||||| |||||||||| ||||||| ||||||||| | ||| |
Sbjct 412 TCGGCACAAGAGTCTGCGAAGAGGAAAAAAGAGATTCAAGAAGATTCACGTGAAGAATCT 471
Query 445 --G-AC--GAA-TCCAGGAGATTGGGTAAAGATGGTTTTGCAAGTGTTATAAAAGTTGGT 498
| || || | ||||| ||||| | ||||||| |||||||||||| | | || ||||
Sbjct 472 AGGAACAATAAGTACAGGACATTGGATCAAGATGGCTTTGCAAGTGTTGTCACAGGTGGT 531
Query 499 GGTGAAGAAGATGATGAGAAGAAGAAGAACGTGAGACTAG-TTAGAAACCGTGAAAGTGC 557
| |||||||||||||||||||||| | || |||||||| | |||||||||||||||||||
Sbjct 532 GATGAAGAAGATGATGAGAAGAAG-A-AA-GTGAGACT-GATTAGAAACCGTGAAAGTGC 587
Query 558 TCACCTTTCAAGACAGAGGAAGAAGCATTACGTGGAGGAGCTTGAAGATAAAGTTAAGAA 617
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 588 TCACCTTTCAAGACAGAGGAAGAAACATTACGTGGAGGAGCTTGAAGATAAAGTTAAGAA 647
Query 618 TATGCATTCCACTATATCGGAATTGAGCAGTAAGATGTCTTATTTCGTGGCTGAGAATGT 677
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 648 CATGCACTCCACTATATCGGAATTGAGCAGTAAGATGTCTTATTTCATGGCTGAGAATGT 707
Query 678 CACTTTGAGGCAACAGATGGG---CA-CAA-GG--T-TCTC-A--A--G-TGGA-CCACC 722
||||||||||| |||||||| || || || | | || | | | || | |||||
Sbjct 708 TACTTTGAGGCAGCAGATGGGCCCCAGAAATGGCATGTGTCAACCATCGATGTATCCACC 767
Query 723 GATGGTTCCAATTGTTTATCCATGGATGCAGTATCCGGCTTATATGGTTAAACCACAAGG 782
| ||| |||||| | |||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct 768 GTTGGCTCCAATGGCTTATCCGTGGATACCGTATCCGGCTTATATGGTTAAACCGCAAGG 827
Query 783 TTCTCAAGTGGCTTTGCTTCCTATTCCTCGGTTGAAACCAAAACATTCTGTTGCTAAGGT 842
|||||||||| |||| |||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 828 TTCTCAAGTGCCTTTACTTCCTATTCCTCGGTTGAAACCACAACACTCTGTGGCTAAGGT 887
Query 843 GAAGAAGTTCAAGAAGGTTGCTAgttttagtgtttttggttttctgttttg--ta----t 896
||||||||||||||||||||||||| |||||||| ||||| |||||||||| || |
Sbjct 888 GAAGAAGTTCAAGAAGGTTGCTAGTGTTAGTGTTCTTGGTCTTCTGTTTTGTCTATTTCT 947
Query 897 gtttt-tg-tttgG-T-GCATTGGTGAACATTAGCTATGGGGAGTATAAGTCTAACTATG 952
||||| || |||| | |||| ||||||||||||||||| ||||||||| | |||
Sbjct 948 GTTTTGTGCATTGGCTCCCATT-GTGAACATTAGCTATGGCGAGTATAAG--T--CTA-- 1000
Query 953 TTACTGACGGGGTTTATGATCAGTCTAGAGGAAGAGTTTTGGTTGTTGATAGTAGTAGAG 1012
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1001 --ACT-ACGGGGTTTATGATCAGTCTAGAGGAAGAGTTTTGGTTGTTGATAGTAATAAAG 1057
Query 1013 TACATTGTGGGGGAGATTCTGATCAAGGAGTGGGAAGAAACGTATCTGAAACAGAGAATT 1072
|||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 1058 CACATTGTGGGGGAGGTTCTGATCAAGGAGTGAGAAGAAACGTATCTGAGACAGAGAACT 1117
Query 1073 TGGGGCCTCCTCGAAATAGTAGTGAACCTCTAGTTGCATCGCTATTTGTTCCGAGGAATG 1132
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1118 TGGGGCCTCCTCGAAATAGTAGTGAACCTCTAGTTGCATCGCTATTTGTCCCGAGGAATG 1177
Query 1133 AAAAGCTTGTCAAGATCGATGGAAATTTGATTATTCATTCTGTTTTGGCGAGCGAGAAAG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AAAAGCTTGTCAAGATCGATGGAAATTTGATTATTCATTCTGTTTTGGCGAGCGAGAAAG 1237
Query 1193 CCAGGGATTCTGAAACAAAGAACGAAGAAGGGAAAAGTGTTCTAGCAACTACAACTAAAA 1252
||||||||||||||||||||||| ||||||| ||||| | | |||||||||| ||||||
Sbjct 1238 CCAGGGATTCTGAAACAAAGAACAAAGAAGGCAAAAGCGGTGTAGCAACTACTACTAAAG 1297
Query 1253 CT-TTAT--CTCCTGCATTGCCTTTACCTGACTCCACAAGCCCAAGGACCAGGGATGTGT 1309
|||| |||||||| |||||||||||||||||||||| | |||| |||| |||
Sbjct 1298 GGATTATTTCTCCTGCAATGCCTTTACCTGACTCCACAAG-----G-ACCATGGATATGT 1351
Query 1310 CTAAGCACCTCTATAGCGAAACGGGGAAAGGCCTGTCATCTTCTGGTTCTGATGATGCTT 1369
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1352 CTAAGCACCTCTATAGCGAAACGCCGAAAGCCCTGTCATCTTCTGGTTCTGATGATGCTT 1411
Query 1370 CGAACGACCAACTCAAATCAACAATAGCCAATGGTAAAATGCAGCAATGGTTTCGTGAAG 1429
||| || |||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1412 TGAAAGAACAACTCAAATTAACAACAGCCAATGGTCAAATGCAGCAATGGTTTCGTGAAG 1471
Query 1430 GTGTTGCAGGGCCAATGTTCAGTTCGGGGATGTGCACTGAAGTGTTTCAGTTTGATGTCT 1489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1472 GTGTTGCAGGGCCAATGTTCAGTTCGGGGATGTGCACCGAAGTGTTTCAGTTTGATGTCT 1531
Query 1490 CCTCAAACTCAGGAGCCATCATTCCTGCTTCTCCACATACTCAACAGTGTAAGAACACCA 1549
|||||| ||||||| |||||||||||||||| |||| ||| |||| | |||||||||
Sbjct 1532 CCTCAACCTCAGGATCCATCATTCCTGCTTCCCCACCCACTGAACAATCTAAGAACAC-- 1589
Query 1550 GTGATACACAAAAGGGGAAAAAGAACAGAAGAATCCTC-AGTGGTGGTCTTCCGGTATCT 1608
|||||| || ||||||||||||||||||||||||||| | |||||||||| | | ||||
Sbjct 1590 -TGATACTCACAAGGGGAAAAAGAACAGAAGAATCCTCCA-TGGTGGTCTTTCAGCATCT 1647
Query 1609 GACTTTAATCTTACCAAAGAAGATCATAACAGCTCTAGCAAAGACAAGTTCCGGGAAACC 1668
|| ||||||||||||||||| |||||| ||||||||||||| || |||| ||| |||
Sbjct 1648 GATTTTAATCTTACCAAAGA---TCATAAGTGCTCTAGCAAAGAGAACTTCCAGGACACC 1704
Query 1669 AAGCCAGGCC-CATCAATGGTAGTGTCTGTGCTTGTTGATCCCAGAGAAGGCGGTAATGG 1727
||||| | || |||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 1705 AAGCCTG-CCTCATCAATGGTTGTATCTGTGCTTGTTGATCCCAGAGAAGGCGGTGATGG 1763
Query 1728 AGACATCGATGGGATGATGGGAGGAACAAAACCACAGTC-CCGAGTTTTCATAGTCGTGC 1786
||| || |||||||||||||||||||||||| ||| ||| || ||||||||||||| |||
Sbjct 1764 AGATATAGATGGGATGATGGGAGGAACAAAATCACTGTCTCC-AGTTTTCATAGTCTTGC 1822
Query 1787 TTGTGGACGGTGTGAAGTATATAACATACTCTTGCGTTCTTCCACGACCAGATGTCCCTC 1846
||||||||| |||||||||| |||||||||| ||| |||||||||| ||||| |||||||
Sbjct 1823 TTGTGGACGATGTGAAGTATGTAACATACTCCTGCATTCTTCCACGGCCAGAAGTCCCTC 1882
Query 1847 ATCTCATGACCAGTTGA 1863
||||| ||| || ||||
Sbjct 1883 ATCTCGTGAGCACTTGA 1899
> Ahg934911 jgi|Araly1|934911|scaffold_402899.1
Length=2215
Score = 388 bits (210), Expect = 6e-107
Identities = 687/902 (76%), Gaps = 94/902 (10%)
Strand=Plus/Plus
Query 1015 CATTGTGGGGGAGATTCTGATCAAGGAG-TGGGAAGAAACGTATCTGAAACAGAGA-ATT 1072
||||||||| |||||||||||| ||||| | |||| ||| |||||| |||||||| |
Sbjct 1335 CATTGTGGGAGAGATTCTGATCGAGGAGCTAGGAA-AAATATATCTGCAACAGAGAGCTC 1393
Query 1073 TGGGGCCTCCTCGAAATAGTAGTGAACCTCTAGTTGCATCGCTATTTGTTCCGAGGAATG 1132
| | |||||| ||||| ||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1394 T-GTACCTCCTGGAAATGGTAGTGAGCCTCTAGTTGCATCACTCTTTGTTCCGAGGAATG 1452
Query 1133 AAAAGCTTGTCAAGATCGATGGAAATTTGATTATTC-ATTCTGTTTTGGCGAGCGAGAAA 1191
| |||||||| ||||| ||||| |||||||||| || ||||| | |||||||| ||||||
Sbjct 1453 ACAAGCTTGTGAAGATAGATGGGAATTTGATTA-TCAATTCTATATTGGCGAGTGAGAAA 1511
Query 1192 GCCAG-GGATTC-TGAAA--C-AAAGAA-CGAAGAAG-GGAAAAG-TGTTC-TAGCAACT 1242
| | | || ||| |||| | ||| | ||| || || |||| || | | | | |
Sbjct 1512 G-CTGTGGCTTCGCGAAAGGCTTCTGAATCAAAGGAGAGG-AAAGCTG-ACTTGGTGA-T 1567
Query 1243 ACAACTAAAACTTTA-TCTCCTGCATTGCCTTTACCTGACTCCACAAGCCCAAGGACCAG 1301
| || ||| ||| || |||||| ||||| ||||||| | | || |||| |
Sbjct 1568 -C-TCT-AAAGATTATTCCCCTGCACTGCCTCTACCTGA-T----GTG-GGAATGACC-G 1617
Query 1302 -GGATGTGTCTAAGCACCTCTATAG--CGAA-ACGGGGAAA-GGCCTG-TC-ATCTTCTG 1354
|||| || ||||||| |||||||| | || | | ||| | | || ||| ||||
Sbjct 1618 AGGATATGGCTAAGCATCTCTATAGATCTAAGGCTGAAAAACAGAAAGCTCTATCCTCTG 1677
Query 1355 GTTCTGATGATGCTTC-GAACGACCAACTCAAATCAACAA-TAGCCAATGGTAAAATGCA 1412
| |||| |||| | || ||| |||||| ||||| ||| || |||||| ||| |||||||
Sbjct 1678 GCTCTGCTGATAC-TCTGAAAGACCAATTCAAAACAA-AAGCAGCCAACGGTGAAATGCA 1735
Query 1413 GCAATGGTTTCGTGAAGGTGTTGCAGGGCCAATGTTCAGTTCGGGGATGTGCACTGAAGT 1472
||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1736 GCAATGGTTCCGTGAAGGTGTTGCAGGGCCCATGTTTAGTTCAGGGATGTGCACTGAAGT 1795
Query 1473 GTTTCAGTTTGATGTCTCCTCAAACTCAGGAGCCATCATTCCTGCTTCTCCA-CAT--A- 1528
||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| || |
Sbjct 1796 GTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCATCTCCAGCAACCAA 1855
Query 1529 ---CTC-----AACA-GTGTAAGAACACCAGTGATACACAAAAGGGGAAAAAGAACAGAA 1579
||| |||| | |||||||||||| || ||||| ||| |||| ||||||||
Sbjct 1856 TGTCTCTGCTGAACACG-GTAAGAACACCACAGAGACACACAAGC--AAAA-GAACAGAA 1911
Query 1580 GAATCCT-CAGTGGTGGTC---TTCC------GGTATCTGACTTTAATCTTACCAAAGAA 1629
||||||| | ||||| || |||| || ||| || ||||| || ||||||||
Sbjct 1912 GAATCCTTC-GTGGTCTTCCCATTCCACTCCCGGGATCAGATTTTAACCTCACCAAAGA- 1969
Query 1630 G-ATCATA-A--CAGCTCTAGCAAAGACAAGTTCCGGGAAACCAAGCCAGGCC-CATCAA 1684
| | || | | |||| ||||||||| || | ||| ||| | | ||||||
Sbjct 1970 GCACCAGAGAAACAGCAGTAGCAAAGA-AA-T------AAA----GCCTG-CTTCATCAA 2016
Query 1685 TGGTAGTGTCTGTGCTTGTTGATCCCAGAGAAGGCGGTAATGGAGACATCGATGGGATGA 1744
|||| || |||||||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 2017 TGGTTGTATCTGTGCTTGTTGATCCCAGAGAAGGCGGTGATGGAGATATAGATGGGATGA 2076
Query 1745 T-GGGAGGAACAAAACCACAGTCCCGAGTTTTCATAGTCGTGCTTGTGGACGGTGTGAAG 1803
| ||| ||| ||||| ||| ||| |||||||| | ||||||||| | ||| ||| |||
Sbjct 2077 TTGGG-GGACCAAAATCACTGTCTCGAGTTTTTGTGGTCGTGCTTCTTGACAGTGCAAAG 2135
Query 1804 TATATAACATACTCTTGCGTTCTTCCACGACCAG-ATG-TCCCTCATCTCATGACCAGTT 1861
||| ||||||||||||| || || || ||| ||| | | ||| |||||| |||| | ||
Sbjct 2136 TATGTAACATACTCTTGTGTCCTACCTCGATCAGGA-GCTCC-TCATCTTGTGACAACTT 2193
Query 1862 GA 1863
||
Sbjct 2194 GA 2195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5