BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56670.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573 462 1e-129
> Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573
Length=759
Score = 462 bits (250), Expect = 1e-129
Identities = 355/406 (87%), Gaps = 5/406 (1%)
Strand=Plus/Plus
Query 1 ATGATGACGAGAGGACGCAAAGAGAATAGCAACGAGACCTCACCCTCGCCGACACTACTT 60
||||||| |||||||||| |||||||| || | ||||||||||||||||||| || ||||
Sbjct 1 ATGATGAAGAGAGGACGCGAAGAGAATTGCCATGAGACCTCACCCTCGCCGAAACGACTT 60
Query 61 CTTCACGGCGGAGTTATCGATATCCCTCTGAATACTGACAGTGGAG-TGACTAAAAACAC 119
||||||||||||||||| ||||| |||||| || ||||| || ||| | |||||||| ||
Sbjct 61 CTTCACGGCGGAGTTATTGATATTCCTCTGGAT-CTGACCGTAGAGAT-ACTAAAAAAAC 118
Query 120 TCCCGGCGAAATCGCACTATTGAGGTTCAAATCTGTCTCGAAGCTGTGGTCATCCATTAT 179
|||||||||||| | ||| |||||||| ||| ||| |||||||||||||||||||||||
Sbjct 119 TCCCGGCGAAAT--CTCTAGTGAGGTTCCAATGTGTGTCGAAGCTGTGGTCATCCATTAT 176
Query 180 CAGCAGTCGTAGAGACTTCATAGAATCGATAGTGACTCGATTTTTGACTCAGCCTCCTCA 239
|||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||
Sbjct 177 CAGCAGTCGTAGAGACTTCATAGAGTCGATAGTCACTCGATCTCTGACTCAGCCTCCTCG 236
Query 240 TGATGCCCATTTCATCTTCGGCTTCGATTCAGGCCCTTACGTGGAATGTTTCTTAGGCTT 299
|||||||||||||||||||| | ||| | ||||||| ||||||||||||||||||| |||
Sbjct 237 TGATGCCCATTTCATCTTCGACGTCGCTCCAGGCCCCTACGTGGAATGTTTCTTAGCCTT 296
Query 300 ATCGTCTACTTATCCTCCAAATACGGACATAGAAGCAGTACTATCAATCCCTGGGAGAAT 359
|||||||||| ||||||||||| ||||||||||||| | ||||||| ||||||||| |
Sbjct 297 GTCGTCTACTTGCCCTCCAAATACTGACATAGAAGCAGAAATATCAATGCCTGGGAGATT 356
Query 360 GGCGCAGTATGTTTACGGTTTGATGTGTTGTTTGTCTGGTTTTAAG 405
|| ||| || ||| ||| ||||| |||||||| |||||||| |||
Sbjct 357 GGGGCAATACGTTCGCGGCTTGATTTGTTGTTTCTCTGGTTTGAAG 402
Score = 279 bits (151), Expect = 1e-74
Identities = 215/245 (88%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 399 TTTTAAGGATGCTAAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTCACGAGATGCA 458
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 504 TTTGAAGGATGCTGAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTTACGAGATGCA 563
Query 459 TGGCTTTTCAAATTGGCGCATCTTGGGTGCTACTTGTGGTGGTGAGATCCTTTTTGCCAA 518
||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| | |
Sbjct 564 TGGCTTTTCAAATTGGCGCCTCTTGGGTGCTACTCGTGGTGGTGAGATCGTTTTTGGCGA 623
Query 519 GTGGATGTACTG-CATCTATCACTATGAAGACAAGCTGTTATGTGTCTTATATTATGAGC 577
|| || |||| | | ||||| || ||| | | | ||||| |||||||||||||||| |
Sbjct 624 GTTGAGGTACAGGC-TCTATAAC---GAA-A-A-GTTGTTACGTGTCTTATATTATGATC 676
Query 578 CGAAGCGAAACAGTATGAGGGGTGTTGACGTCGAAGGTACTTTACCTAATGATACAAGGC 637
|||||| ||||||||||||| ||||||| |||||||||||||||| || |||| |||||
Sbjct 677 CGAAGCTAAACAGTATGAGGTATGTTGACCTCGAAGGTACTTTACCCAAGGATAGAAGGC 736
Query 638 GTTAC 642
|||||
Sbjct 737 GTTAC 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5