BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56670.1 Length=702 Score E Sequences producing significant alignments: (Bits) Value Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573 462 1e-129 > Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573 Length=759 Score = 462 bits (250), Expect = 1e-129 Identities = 355/406 (87%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 1 ATGATGACGAGAGGACGCAAAGAGAATAGCAACGAGACCTCACCCTCGCCGACACTACTT 60 ||||||| |||||||||| |||||||| || | ||||||||||||||||||| || |||| Sbjct 1 ATGATGAAGAGAGGACGCGAAGAGAATTGCCATGAGACCTCACCCTCGCCGAAACGACTT 60 Query 61 CTTCACGGCGGAGTTATCGATATCCCTCTGAATACTGACAGTGGAG-TGACTAAAAACAC 119 ||||||||||||||||| ||||| |||||| || ||||| || ||| | |||||||| || Sbjct 61 CTTCACGGCGGAGTTATTGATATTCCTCTGGAT-CTGACCGTAGAGAT-ACTAAAAAAAC 118 Query 120 TCCCGGCGAAATCGCACTATTGAGGTTCAAATCTGTCTCGAAGCTGTGGTCATCCATTAT 179 |||||||||||| | ||| |||||||| ||| ||| ||||||||||||||||||||||| Sbjct 119 TCCCGGCGAAAT--CTCTAGTGAGGTTCCAATGTGTGTCGAAGCTGTGGTCATCCATTAT 176 Query 180 CAGCAGTCGTAGAGACTTCATAGAATCGATAGTGACTCGATTTTTGACTCAGCCTCCTCA 239 |||||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||| Sbjct 177 CAGCAGTCGTAGAGACTTCATAGAGTCGATAGTCACTCGATCTCTGACTCAGCCTCCTCG 236 Query 240 TGATGCCCATTTCATCTTCGGCTTCGATTCAGGCCCTTACGTGGAATGTTTCTTAGGCTT 299 |||||||||||||||||||| | ||| | ||||||| ||||||||||||||||||| ||| Sbjct 237 TGATGCCCATTTCATCTTCGACGTCGCTCCAGGCCCCTACGTGGAATGTTTCTTAGCCTT 296 Query 300 ATCGTCTACTTATCCTCCAAATACGGACATAGAAGCAGTACTATCAATCCCTGGGAGAAT 359 |||||||||| ||||||||||| ||||||||||||| | ||||||| ||||||||| | Sbjct 297 GTCGTCTACTTGCCCTCCAAATACTGACATAGAAGCAGAAATATCAATGCCTGGGAGATT 356 Query 360 GGCGCAGTATGTTTACGGTTTGATGTGTTGTTTGTCTGGTTTTAAG 405 || ||| || ||| ||| ||||| |||||||| |||||||| ||| Sbjct 357 GGGGCAATACGTTCGCGGCTTGATTTGTTGTTTCTCTGGTTTGAAG 402 Score = 279 bits (151), Expect = 1e-74 Identities = 215/245 (88%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 399 TTTTAAGGATGCTAAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTCACGAGATGCA 458 ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 504 TTTGAAGGATGCTGAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTTACGAGATGCA 563 Query 459 TGGCTTTTCAAATTGGCGCATCTTGGGTGCTACTTGTGGTGGTGAGATCCTTTTTGCCAA 518 ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| | | Sbjct 564 TGGCTTTTCAAATTGGCGCCTCTTGGGTGCTACTCGTGGTGGTGAGATCGTTTTTGGCGA 623 Query 519 GTGGATGTACTG-CATCTATCACTATGAAGACAAGCTGTTATGTGTCTTATATTATGAGC 577 || || |||| | | ||||| || ||| | | | ||||| |||||||||||||||| | Sbjct 624 GTTGAGGTACAGGC-TCTATAAC---GAA-A-A-GTTGTTACGTGTCTTATATTATGATC 676 Query 578 CGAAGCGAAACAGTATGAGGGGTGTTGACGTCGAAGGTACTTTACCTAATGATACAAGGC 637 |||||| ||||||||||||| ||||||| |||||||||||||||| || |||| ||||| Sbjct 677 CGAAGCTAAACAGTATGAGGTATGTTGACCTCGAAGGTACTTTACCCAAGGATAGAAGGC 736 Query 638 GTTAC 642 ||||| Sbjct 737 GTTAC 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25809214809 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5