BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56690.1
Length=3409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486110 jgi|Araly1|486110|fgenesh2_kg.5__2102__AT3G56690.1 4891 0.0
> Ahg486110 jgi|Araly1|486110|fgenesh2_kg.5__2102__AT3G56690.1
Length=3285
Score = 4891 bits (2648), Expect = 0.0
Identities = 3014/3190 (94%), Gaps = 27/3190 (1%)
Strand=Plus/Plus
Query 124 TTGCTTTTTACTCCGGAGTGTAGATTAA-CAAAAAGCTAAAGATGCCTTCGAAGAAGAAG 182
|||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||
Sbjct 65 TTGCTTTTTACTCCGGAGTGTAGA-TAAGC-AAAAGCTGTAGATGCCTTCGAAGAAGAAG 122
Query 183 CAGTCGAGGACGCCATCACGGCTATCCAATTCGGAACCGCCTGCATCTCCAAGAACTCCG 242
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 CAGTCGAGGACGCCATCTCGGCTATCCAATTCGGAACCGCCTGCGTCTCCAAGAACTCCG 182
Query 243 GCGTCTTCAACAACTAGTCGAGATACAGA-TTCTATCAACGAAGAAGAGCTTAGGCGCAG 301
|||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 183 GCGTCTTCAACAACGAGTCGAGATACAGACTT-TATCAACGAAGAAGAACTTAGGCGCAG 241
Query 302 TATTGAAGAAGCGTCTGCTGCGTTTCCTTGTCTTCTCGGAAAATCTGCAATCATCGCAAG 361
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 242 TATTGAAGAAGCGTCAGCTGCGTTTCCTTCTCTTCTCGGAAAATCTGCAATCATTGGAAG 301
Query 362 AGTAGCCGATGTTGCATCAGAATCTATCAGAGGCTCTAAGATTTGGCTATCGGAAACTTC 421
||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||
Sbjct 302 AGTAGCCGATGTTGCATCAGAGTCCATCAGAGGTTCTAAGATTTGGTTATCGGAAACTTC 361
Query 422 TATGGTCGCTGCTTCTCTCAGCCCTGGCTCCACTGTATCGGTATCACTAGCTTCTCCGGA 481
|||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 362 AATGGTCGCTGCTTCTCTCAGTCCTGGTTCTACTGTATCGGTATCACTGGCTTCTCCGGA 421
Query 482 GAGTAGATTTTCGAGAAGCTTCCCACTCAGCTCGATTAAAGCTGAATATGGAGATGAC-A 540
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 422 AAGTAGATTTTCGAGAAGCTTCCCACTCAGCTTGATTAAATCTGAATATGGAGATGACAA 481
Query 541 GTGAGAGTATCATTGCTGATGAACCAGGAAACTATTTTGTGCTTACCACCGTTTTCTCTT 600
| ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 482 G-GAGAGTAGGATTGCTGATGAACCAGGGAACTATTTTGTGCTTGCCACCGTTTTCTCTT 540
Query 601 CTTCAAAGGTTTTCAAAGATGCTGTTCGAATTTCATTGAATCTTTGCTATGGGCTTGGTT 660
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 CTTCTAAGGTTTTGAAGGATGCTGTTCGTATTTCATTGAATCTTTGCTATGGGCTTGGTT 600
Query 661 GTCCTGTTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCCTGCTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 660
Query 721 AATTCAACGGGAATGGTAGATCTCGCTA-TGATGATGTTAACCATCTATCGCTGCTTGCC 779
||||| ||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 661 AATTCCACGGGAATGGTGGATCTCTC-AGTGATGATGTTAACCATCTATCGCTGCTTGCC 719
Query 780 TGCAAAGAGTTGTGTTTAGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAGAATGCT 839
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 TGTAAAGAGTTGTGTTTGGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAAAATGCT 779
Query 840 TTTGAAAGTTCTTACGAGCAGAACGGAAATGGGAATTCAACTCCTAAGACACCAGCAAAC 899
||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 780 ATTGAAAGTTCTCACGAGCAGAACGGAAATGGTAATTCAACCCCTAAGACACCATCAAAC 839
Query 900 TTGCAAAAGTTTAGTTCTCCTCGCCCCAAATCTCCGGTTTCACCAATCATAGAGGACTCT 959
|||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||||||
Sbjct 840 TTGCAAAAGTTTAGCTCTCCTCGCCCCGAATCTCCGGCTTCACCAATCTTACAGGACTCT 899
Query 960 GTTTTCAGTTGCAAGCAGCGGTTTTCATCTGAAAGCTCGATTGATCTACGAGAGGTGTTG 1019
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 GTTTTCAGTAGCAAGCAGCGGTTTTCATTTGAAAGCTCGATTGATCTACGAGAGGTGTTG 959
Query 1020 AGCAATGAAAGTTCGAAAAAACTTTTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1079
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 AGCAATGAAAGTTCGAAGAAACTTCTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1019
Query 1080 AGCCTGCTATATGGGAATTTTGTGTCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGC 1139
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AGCCTGCTATATGGGAATTTTGTGGCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGT 1079
Query 1140 GTCAAAAGAGCTGATAAAAGGCCATCTGACACATCCAACAGAAATCATGCTTTTATGATC 1199
|||||||| ||||||||||||| |||||| |||||||| |||||||| |||||||| |||
Sbjct 1080 GTCAAAAGGGCTGATAAAAGGCAATCTGATACATCCAAGAGAAATCAAGCTTTTATAATC 1139
Query 1200 AATCAGGAAACTAAAGTCTACCTCCATCATACATTAGACTTAGCATCTGAAATTCAAGGG 1259
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1140 AATCAGGAAACTAAAGTCTACCTCCATCATACATTGGACTTAGCATCTGAAATTCGAGAG 1199
Query 1260 AGAACATTTGTACAAGGTCTGCA-ATT--T------GATGAAGGAGAAAATGTGGGATGT 1310
|||| || ||| |||||||| || || | ||||||||||||||||||||||||
Sbjct 1200 AGAAAATCTGTGCAAGGTCTCCAGTTTGATGAAGACGATGAAGGAGAAAATGTGGGATGT 1259
Query 1311 GAAATCTCAAAGTTAGGTGGTCTCTCTAAAGAATATGCAATTTTAAGGGACATCA-TTGA 1369
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1260 GAAATCTCAAAGTTAGGTGGCCTCTCTAAAGAATATGCAATTTTAAGGGACAT-AGTTGT 1318
Query 1370 TTCTTCGTCCATAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1429
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCCTCGTCCACAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1378
Query 1430 TATTCATGGACCTCCAGGCACAGGAAAAACATCTTTGGCTCGAACCTTTGCCCGCCATTC 1489
|||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1379 TATTTATGGACCTCCAGGCACAGGAAAAACATCTTTAGCTCGGTCCTTTGCCCGCGATTC 1438
Query 1490 TGGTGTCAACTTTTTCTCTGTGAATGGACCAGAGATTATAAGCCAGTATTTGGGTGAAAG 1549
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1439 TGGTGTCAACTTTTTCTCTGTGAATGGACCTGAGATTATAAGCCAGTATTTGGGCGAAAG 1498
Query 1550 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1558
Query 1610 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1618
Query 1670 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGACG-GATGGCGTTG 1728
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1619 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGA-GTGATGGCGTTG 1677
Query 1729 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCCGCCCTTAGACGGCCAGGAA 1788
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1678 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCTGCCCTTAGACGGCCAGGAA 1737
Query 1789 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTACACAACGGTCCGATATACTTC 1848
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1738 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTGCACAACGGTCCGATATACTTC 1797
Query 1849 ACATAATTCTCCGTGGGATGCGGCATTCACTTTCAAACATCCAGGTTGAACAGCTTGCTA 1908
| | ||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1798 GCGTCATTCTCCATGGGATGCGGCATTCACTGTCAGACATCCAGATTGAACAGCTTGCTA 1857
Query 1909 TGGCAACCCATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1968
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TGGCAACACATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1917
Query 1969 TCTGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCCCTTGAAGAAG 2028
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1918 TATGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCTCTTGAAGAAG 1977
Query 2029 CACCTATTGCTGAGTCCTCGTCAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2088
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CACCTATTGCTGAGTCCTCGACAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2037
Query 2089 CATCGTCATGTATCACAATTTCAGCCACAACTTCAGGGGCTCAGCGTTCATTTAGTTTGG 2148
||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2038 CATCGTCATGTATAACAGTTTCACCCACAACTTCAGGGGCTCAGCGTACATTTAGTTTAA 2097
Query 2149 ATGAGACAGTTTCCCTAGTAGCGGATGATATTCAAAACAATGGCAACTCTTGTTCTGAAC 2208
||| |||||| |||| |||||||||||||||||||| || | ||||||||||||| ||||
Sbjct 2098 ATGGGACAGTCTCCCGAGTAGCGGATGATATTCAAAGCAGTAGCAACTCTTGTTCGGAAC 2157
Query 2209 AGATGCTTAGAAAACAAGGA-GAACATACCTTAAGTGTTGGATTTGAAGATTTTGAAAAT 2267
|||| ||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 2158 AGATACTTAGAAAAGAAG-ACGAACGTACCTTAAGTGTAGGATTTGAAGATTTTGAAAAC 2216
Query 2268 GCTAAGACCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2327
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GCTAAGATCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2276
Query 2328 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2336
Query 2388 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCAAGTGGGATA 2447
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2337 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCCAGTGGGATA 2396
Query 2448 CTGATGTTTGGTCCTCCTGGATGTAGCAAGACCCTTATGGCACGTGCAGTAGCTTCTGAA 2507
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2397 CTGATGTTTGGTCCACCTGGATGTAGCAAGACCCTTATGGCACGTGCCGTAGCTTCTGAA 2456
Query 2508 GCCAAGCTGAATTTTCTTGCTGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2567
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GCCAAGCTGAATTTCCTTGCAGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2516
Query 2568 TCCGAAAAGGCTGTTAGGTCCCTATTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATC 2627
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2517 TCCGAAAAGGCCGTTAGGTCCCTTTTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATA 2576
Query 2628 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2636
Query 2688 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2696
Query 2748 GGTGTTACCGTCATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2807
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 GGTGTTACTGTTATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2756
Query 2808 CCTGGGCGCTTTGATCGCTTGCTATATGTCGGACCTCCTAATGAAACTGATCGCGAAGCA 2867
||||| || ||||| |||||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 2757 CCTGGACGTTTTGACCGCTTGCTATATGTTGGACCTCCTGATGAAGCTGATCGCGAAGCA 2816
Query 2868 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCTGATATTTGTTTAAAGGAATTG 2927
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2817 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCGGATATTTGTTTAAAGGAATTC 2876
Query 2928 GCTTCCATTACCAAAGGCTATACAGGAGCTGACATATCATTGATATGCAGAGAAGCAGCT 2987
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2877 GCTTCCATTACCAAAGGCTACACAGGAGCTGACATATCATTGATATGTAGAGAAGCAGCT 2936
Query 2988 ATTGCTGCACTTGAGGAGAGTCTTGAAATGGAGGAAATAAGCATGCGACATTTAAAAGCT 3047
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2937 ATTGCTGCACTTGAGGAGAGTCTTGAGATGGAGGAAATAAGCATGCGACATTTAAAAGCT 2996
Query 3048 GCGATTAGCCAAATCGAACCAACAGAGATTCTGTCTTACAAAGCACTGTCTGAAAAATTC 3107
|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2997 GCAATTAGCCAAATCGAACCAACAGAGATTCAATCTTACAAAGCATTGTCTGAAAAATTC 3056
Query 3108 CAAAGACTTGTCCATACAGAC-CCACAAAGAGAAGAGGAGGTTACACAACCAGGAAACAA 3166
||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 3057 CAAAGACTTGTCCATACAG-CTCCAAAAAGAGAAGAGGAAGTTACACAACCAGGAAACAA 3115
Query 3167 AAGCCGATCTCTATGGACACCATTGAGATCAGTTGCCATGTTTCTTCGCCGCCACATTGC 3226
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 3116 AAGCCGATCTCTGTGGACACCATTGAAATCAGTTGCGATGTTTCTTCGCCGCCACATTGG 3175
Query 3227 TTCGTAAACAAATGTTGAAACCAGCAAACTTTGGAAATTCTCCATCACTAACGTACGTAT 3286
||||||||||||||||| |||||||||||| || ||||||||||| |||| |||||||
Sbjct 3176 TTCGTAAACAAATGTTGTTACCAGCAAACTTGGGCAATTCTCCATCGTTAACATACGTAT 3235
Query 3287 TGTGTTTGTT 3296
| | ||||||
Sbjct 3236 TTT-TTTGTT 3244
Score = 102 bits (55), Expect = 2e-20
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 27 GAGAAATTGAAGATTTTTCATTTCGGCTCTTTATCTCCGGCGAGGATCGCCGGCGTTCTG 86
|||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GAGAAATTGAAGGTTTTTCCTCTCGGCTCCTTATCTCCGGCGAGGATCGCCGGCGTTCTG 60
Query 87 TAACTTA-TTTATACTC 102
|||||| ||| |||||
Sbjct 61 TAACTTGCTTTTTACTC 77
Score = 84.2 bits (45), Expect = 6e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 3311 tttttttGTTGCGTCTCACAGACTTGTACGAATCAACGGAACAAATAACAT 3361
||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 3235 TTTTTTTGTTGCGTCTCACAGACTTGTACGAATCAACAGAACAAATAGCAT 3285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128710711886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5