BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56690.1 Length=3409 Score E Sequences producing significant alignments: (Bits) Value Ahg486110 jgi|Araly1|486110|fgenesh2_kg.5__2102__AT3G56690.1 4891 0.0 > Ahg486110 jgi|Araly1|486110|fgenesh2_kg.5__2102__AT3G56690.1 Length=3285 Score = 4891 bits (2648), Expect = 0.0 Identities = 3014/3190 (94%), Gaps = 27/3190 (1%) Strand=Plus/Plus Query 124 TTGCTTTTTACTCCGGAGTGTAGATTAA-CAAAAAGCTAAAGATGCCTTCGAAGAAGAAG 182 |||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||| Sbjct 65 TTGCTTTTTACTCCGGAGTGTAGA-TAAGC-AAAAGCTGTAGATGCCTTCGAAGAAGAAG 122 Query 183 CAGTCGAGGACGCCATCACGGCTATCCAATTCGGAACCGCCTGCATCTCCAAGAACTCCG 242 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 123 CAGTCGAGGACGCCATCTCGGCTATCCAATTCGGAACCGCCTGCGTCTCCAAGAACTCCG 182 Query 243 GCGTCTTCAACAACTAGTCGAGATACAGA-TTCTATCAACGAAGAAGAGCTTAGGCGCAG 301 |||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 183 GCGTCTTCAACAACGAGTCGAGATACAGACTT-TATCAACGAAGAAGAACTTAGGCGCAG 241 Query 302 TATTGAAGAAGCGTCTGCTGCGTTTCCTTGTCTTCTCGGAAAATCTGCAATCATCGCAAG 361 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||| Sbjct 242 TATTGAAGAAGCGTCAGCTGCGTTTCCTTCTCTTCTCGGAAAATCTGCAATCATTGGAAG 301 Query 362 AGTAGCCGATGTTGCATCAGAATCTATCAGAGGCTCTAAGATTTGGCTATCGGAAACTTC 421 ||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||| Sbjct 302 AGTAGCCGATGTTGCATCAGAGTCCATCAGAGGTTCTAAGATTTGGTTATCGGAAACTTC 361 Query 422 TATGGTCGCTGCTTCTCTCAGCCCTGGCTCCACTGTATCGGTATCACTAGCTTCTCCGGA 481 |||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct 362 AATGGTCGCTGCTTCTCTCAGTCCTGGTTCTACTGTATCGGTATCACTGGCTTCTCCGGA 421 Query 482 GAGTAGATTTTCGAGAAGCTTCCCACTCAGCTCGATTAAAGCTGAATATGGAGATGAC-A 540 ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | Sbjct 422 AAGTAGATTTTCGAGAAGCTTCCCACTCAGCTTGATTAAATCTGAATATGGAGATGACAA 481 Query 541 GTGAGAGTATCATTGCTGATGAACCAGGAAACTATTTTGTGCTTACCACCGTTTTCTCTT 600 | ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 482 G-GAGAGTAGGATTGCTGATGAACCAGGGAACTATTTTGTGCTTGCCACCGTTTTCTCTT 540 Query 601 CTTCAAAGGTTTTCAAAGATGCTGTTCGAATTTCATTGAATCTTTGCTATGGGCTTGGTT 660 |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 541 CTTCTAAGGTTTTGAAGGATGCTGTTCGTATTTCATTGAATCTTTGCTATGGGCTTGGTT 600 Query 661 GTCCTGTTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 720 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTCCTGCTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 660 Query 721 AATTCAACGGGAATGGTAGATCTCGCTA-TGATGATGTTAACCATCTATCGCTGCTTGCC 779 ||||| ||||||||||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 661 AATTCCACGGGAATGGTGGATCTCTC-AGTGATGATGTTAACCATCTATCGCTGCTTGCC 719 Query 780 TGCAAAGAGTTGTGTTTAGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAGAATGCT 839 || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 720 TGTAAAGAGTTGTGTTTGGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAAAATGCT 779 Query 840 TTTGAAAGTTCTTACGAGCAGAACGGAAATGGGAATTCAACTCCTAAGACACCAGCAAAC 899 ||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||| Sbjct 780 ATTGAAAGTTCTCACGAGCAGAACGGAAATGGTAATTCAACCCCTAAGACACCATCAAAC 839 Query 900 TTGCAAAAGTTTAGTTCTCCTCGCCCCAAATCTCCGGTTTCACCAATCATAGAGGACTCT 959 |||||||||||||| |||||||||||| ||||||||| |||||||||| || |||||||| Sbjct 840 TTGCAAAAGTTTAGCTCTCCTCGCCCCGAATCTCCGGCTTCACCAATCTTACAGGACTCT 899 Query 960 GTTTTCAGTTGCAAGCAGCGGTTTTCATCTGAAAGCTCGATTGATCTACGAGAGGTGTTG 1019 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 900 GTTTTCAGTAGCAAGCAGCGGTTTTCATTTGAAAGCTCGATTGATCTACGAGAGGTGTTG 959 Query 1020 AGCAATGAAAGTTCGAAAAAACTTTTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1079 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 960 AGCAATGAAAGTTCGAAGAAACTTCTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1019 Query 1080 AGCCTGCTATATGGGAATTTTGTGTCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGC 1139 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1020 AGCCTGCTATATGGGAATTTTGTGGCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGT 1079 Query 1140 GTCAAAAGAGCTGATAAAAGGCCATCTGACACATCCAACAGAAATCATGCTTTTATGATC 1199 |||||||| ||||||||||||| |||||| |||||||| |||||||| |||||||| ||| Sbjct 1080 GTCAAAAGGGCTGATAAAAGGCAATCTGATACATCCAAGAGAAATCAAGCTTTTATAATC 1139 Query 1200 AATCAGGAAACTAAAGTCTACCTCCATCATACATTAGACTTAGCATCTGAAATTCAAGGG 1259 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | Sbjct 1140 AATCAGGAAACTAAAGTCTACCTCCATCATACATTGGACTTAGCATCTGAAATTCGAGAG 1199 Query 1260 AGAACATTTGTACAAGGTCTGCA-ATT--T------GATGAAGGAGAAAATGTGGGATGT 1310 |||| || ||| |||||||| || || | |||||||||||||||||||||||| Sbjct 1200 AGAAAATCTGTGCAAGGTCTCCAGTTTGATGAAGACGATGAAGGAGAAAATGTGGGATGT 1259 Query 1311 GAAATCTCAAAGTTAGGTGGTCTCTCTAAAGAATATGCAATTTTAAGGGACATCA-TTGA 1369 |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| Sbjct 1260 GAAATCTCAAAGTTAGGTGGCCTCTCTAAAGAATATGCAATTTTAAGGGACAT-AGTTGT 1318 Query 1370 TTCTTCGTCCATAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1429 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TTCCTCGTCCACAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1378 Query 1430 TATTCATGGACCTCCAGGCACAGGAAAAACATCTTTGGCTCGAACCTTTGCCCGCCATTC 1489 |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 1379 TATTTATGGACCTCCAGGCACAGGAAAAACATCTTTAGCTCGGTCCTTTGCCCGCGATTC 1438 Query 1490 TGGTGTCAACTTTTTCTCTGTGAATGGACCAGAGATTATAAGCCAGTATTTGGGTGAAAG 1549 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1439 TGGTGTCAACTTTTTCTCTGTGAATGGACCTGAGATTATAAGCCAGTATTTGGGCGAAAG 1498 Query 1550 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1558 Query 1610 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1618 Query 1670 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGACG-GATGGCGTTG 1728 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1619 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGA-GTGATGGCGTTG 1677 Query 1729 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCCGCCCTTAGACGGCCAGGAA 1788 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1678 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCTGCCCTTAGACGGCCAGGAA 1737 Query 1789 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTACACAACGGTCCGATATACTTC 1848 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1738 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTGCACAACGGTCCGATATACTTC 1797 Query 1849 ACATAATTCTCCGTGGGATGCGGCATTCACTTTCAAACATCCAGGTTGAACAGCTTGCTA 1908 | | ||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 1798 GCGTCATTCTCCATGGGATGCGGCATTCACTGTCAGACATCCAGATTGAACAGCTTGCTA 1857 Query 1909 TGGCAACCCATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1968 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 TGGCAACACATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1917 Query 1969 TCTGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCCCTTGAAGAAG 2028 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1918 TATGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCTCTTGAAGAAG 1977 Query 2029 CACCTATTGCTGAGTCCTCGTCAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2088 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1978 CACCTATTGCTGAGTCCTCGACAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2037 Query 2089 CATCGTCATGTATCACAATTTCAGCCACAACTTCAGGGGCTCAGCGTTCATTTAGTTTGG 2148 ||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||| Sbjct 2038 CATCGTCATGTATAACAGTTTCACCCACAACTTCAGGGGCTCAGCGTACATTTAGTTTAA 2097 Query 2149 ATGAGACAGTTTCCCTAGTAGCGGATGATATTCAAAACAATGGCAACTCTTGTTCTGAAC 2208 ||| |||||| |||| |||||||||||||||||||| || | ||||||||||||| |||| Sbjct 2098 ATGGGACAGTCTCCCGAGTAGCGGATGATATTCAAAGCAGTAGCAACTCTTGTTCGGAAC 2157 Query 2209 AGATGCTTAGAAAACAAGGA-GAACATACCTTAAGTGTTGGATTTGAAGATTTTGAAAAT 2267 |||| ||||||||| ||| | |||| |||||||||||| |||||||||||||||||||| Sbjct 2158 AGATACTTAGAAAAGAAG-ACGAACGTACCTTAAGTGTAGGATTTGAAGATTTTGAAAAC 2216 Query 2268 GCTAAGACCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2327 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2217 GCTAAGATCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2276 Query 2328 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2277 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2336 Query 2388 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCAAGTGGGATA 2447 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2337 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCCAGTGGGATA 2396 Query 2448 CTGATGTTTGGTCCTCCTGGATGTAGCAAGACCCTTATGGCACGTGCAGTAGCTTCTGAA 2507 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2397 CTGATGTTTGGTCCACCTGGATGTAGCAAGACCCTTATGGCACGTGCCGTAGCTTCTGAA 2456 Query 2508 GCCAAGCTGAATTTTCTTGCTGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2567 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2457 GCCAAGCTGAATTTCCTTGCAGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2516 Query 2568 TCCGAAAAGGCTGTTAGGTCCCTATTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATC 2627 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2517 TCCGAAAAGGCCGTTAGGTCCCTTTTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATA 2576 Query 2628 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2577 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2636 Query 2688 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2637 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2696 Query 2748 GGTGTTACCGTCATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2807 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2697 GGTGTTACTGTTATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2756 Query 2808 CCTGGGCGCTTTGATCGCTTGCTATATGTCGGACCTCCTAATGAAACTGATCGCGAAGCA 2867 ||||| || ||||| |||||||||||||| ||||||||| ||||| |||||||||||||| Sbjct 2757 CCTGGACGTTTTGACCGCTTGCTATATGTTGGACCTCCTGATGAAGCTGATCGCGAAGCA 2816 Query 2868 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCTGATATTTGTTTAAAGGAATTG 2927 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2817 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCGGATATTTGTTTAAAGGAATTC 2876 Query 2928 GCTTCCATTACCAAAGGCTATACAGGAGCTGACATATCATTGATATGCAGAGAAGCAGCT 2987 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2877 GCTTCCATTACCAAAGGCTACACAGGAGCTGACATATCATTGATATGTAGAGAAGCAGCT 2936 Query 2988 ATTGCTGCACTTGAGGAGAGTCTTGAAATGGAGGAAATAAGCATGCGACATTTAAAAGCT 3047 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2937 ATTGCTGCACTTGAGGAGAGTCTTGAGATGGAGGAAATAAGCATGCGACATTTAAAAGCT 2996 Query 3048 GCGATTAGCCAAATCGAACCAACAGAGATTCTGTCTTACAAAGCACTGTCTGAAAAATTC 3107 || |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 2997 GCAATTAGCCAAATCGAACCAACAGAGATTCAATCTTACAAAGCATTGTCTGAAAAATTC 3056 Query 3108 CAAAGACTTGTCCATACAGAC-CCACAAAGAGAAGAGGAGGTTACACAACCAGGAAACAA 3166 ||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||| Sbjct 3057 CAAAGACTTGTCCATACAG-CTCCAAAAAGAGAAGAGGAAGTTACACAACCAGGAAACAA 3115 Query 3167 AAGCCGATCTCTATGGACACCATTGAGATCAGTTGCCATGTTTCTTCGCCGCCACATTGC 3226 |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 3116 AAGCCGATCTCTGTGGACACCATTGAAATCAGTTGCGATGTTTCTTCGCCGCCACATTGG 3175 Query 3227 TTCGTAAACAAATGTTGAAACCAGCAAACTTTGGAAATTCTCCATCACTAACGTACGTAT 3286 ||||||||||||||||| |||||||||||| || ||||||||||| |||| ||||||| Sbjct 3176 TTCGTAAACAAATGTTGTTACCAGCAAACTTGGGCAATTCTCCATCGTTAACATACGTAT 3235 Query 3287 TGTGTTTGTT 3296 | | |||||| Sbjct 3236 TTT-TTTGTT 3244 Score = 102 bits (55), Expect = 2e-20 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 27 GAGAAATTGAAGATTTTTCATTTCGGCTCTTTATCTCCGGCGAGGATCGCCGGCGTTCTG 86 |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||| Sbjct 1 GAGAAATTGAAGGTTTTTCCTCTCGGCTCCTTATCTCCGGCGAGGATCGCCGGCGTTCTG 60 Query 87 TAACTTA-TTTATACTC 102 |||||| ||| ||||| Sbjct 61 TAACTTGCTTTTTACTC 77 Score = 84.2 bits (45), Expect = 6e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 3311 tttttttGTTGCGTCTCACAGACTTGTACGAATCAACGGAACAAATAACAT 3361 ||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 3235 TTTTTTTGTTGCGTCTCACAGACTTGTACGAATCAACAGAACAAATAGCAT 3285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 128710711886 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5