BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56700.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324181 jgi|Araly1|324181|fgenesh1_pm.C_scaffold_5001725 1672 0.0
Ahg938632 jgi|Araly1|938632|scaffold_502823.1 134 3e-30
> Ahg324181 jgi|Araly1|324181|fgenesh1_pm.C_scaffold_5001725
Length=1575
Score = 1672 bits (905), Expect = 0.0
Identities = 1363/1580 (86%), Gaps = 48/1580 (3%)
Strand=Plus/Plus
Query 1 ATGGCTACCACAAATGTCCTCGCCACGAGCCACGCCTTCAAATTGAATG-GTGTCAGCTA 59
||||||| ||||||| |||| ||| | ||| || || |||||||| ||| | |||||||
Sbjct 1 ATGGCTATCACAAATCTCCTTGCCTCAAGCAACCCCGTCAAATTGGATGCCT-TCAGCTA 59
Query 60 CTTCTCCTCTTTTC-CCCGCAAACCTAACCACTACATGCCTCGTCGTCGTTT-ATCACAT 117
||||||||| | || | |||||| ||||||||| || || | ||||||| | | ||
Sbjct 60 CTTCTCCTC-TCTCTCGGGCAAACAAAACCACTACTTGACT--T-GTCGTTTGA-CGCAG 114
Query 118 ACTACTCGTAGAGTCCAAACTTCGTGTTTTTATGGTGAGACGTCTTTTG-AAGCTGTAAC 176
|| |||||||||||||||||||| |||| | || ||||||||| |||| ||||||| ||
Sbjct 115 ACGACTCGTAGAGTCCAAACTTCTTGTTGTAATCATGAGACGTC-TTTGAAAGCTGTGAC 173
Query 177 GTCGTTAGTTACGCCTAAGACAGAAACAAGTCGTAACAGTGACGGAATTGGAA-TCGTCC 235
|||| ||| | || | || | || ||| |||||||| |||||||| |||||| || |||
Sbjct 174 GTCGCTAGAGATGCATGAGGCTGACACACGTCGTAACTGTGACGGAGTTGGAATTC-TCC 232
Query 236 GTTTCTTAGAAGGGAAAAGCTATCTTGTTACTGGTGCAACAGGGTTTCTTGCCAAAGTGT 295
|||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 233 GTTTCTTAAAAGCGAAAAGCTATCTCGTTACTGGTGCAACAGGGTTTCTTGCTAAAGCGT 292
Query 296 TGATTGAGAAACTGTTGAGGGAAAGTCTTGAAATTGGGAAGATCTTCCTTCTGATGAGAT 355
||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||
Sbjct 293 TGATTGAGAAACTGTTGAGGGCAAGTCCTGAGATTGGGAAGATCTTTCTTCTGATGAGAT 352
Query 356 CCAAGGATCAAGAATCAGCAAACAAGAGA-CTCTACGATGAGATCATAAGCTCGGATCTG 414
||||||| ||||||||||| ||||||||| || || ||||||||||| |||||||||||
Sbjct 353 CCAAGGACCAAGAATCAGCCAACAAGAGACCT-TATGATGAGATCATTAGCTCGGATCTT 411
Query 415 TTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTTACGAAGCTTTCATGAAGAGAAAGTTG 474
||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||| ||
Sbjct 412 TTCAAGCTTCTGAAGCAAACGCATGGCAGCTCCTACGAAGCCTTCATGAAGAGCAAGCTG 471
Query 475 ATTCCAGTAATTGGAGACATT-GAGGAAGACAATCTAGGGATCAAATCTGAAATAGC-AA 532
||||||| ||||||||| ||| || |||||||| || |||||| ||||||||||||| |
Sbjct 472 ATTCCAGGAATTGGAGATATTGGA-GAAGACAACCTCGGGATCGAATCTGAAATAGCTGA 530
Query 533 ACATGATCAGTGAGGAGATTGATGTTATTATCAGTTG-TGGTGGTCGTACAACATTCGAC 591
| ||||| ||||| |||| |||||| ||||||| ||| | |||||||||||||||| |||
Sbjct 531 A-ATGATTAGTGAAGAGACTGATGTCATTATCAATTGCT-GTGGTCGTACAACATTTGAC 588
Query 592 GACAGATACGATTCTGCCCTAAGTGTCAATGCTCTTGGACCGGCTTACGTGACTGGTAAG 651
||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct 589 GACAGATACGACTCTGCCATAAATGTCAATGCTCTTGGACCTGCTTACGTGACTGGTAAG 648
Query 652 AGAGAGGGGACAGTACTAGAAACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 711
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAAGAGGGGATAGTACTAGAGACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 708
Query 712 AACATCAAATCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGAGAA 771
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 709 AACATCGACTCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGTGAA 768
Query 772 GAAATCAAGAAACTCAAAGAACTCGGTTTTGAAAGAGCTCAACACTATGGGTGGGAAAAT 831
|||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 769 GAAACCAAGAAACTGAAAGAACTCGGTTTTGAAAGAGCTCAACATTATGGATGGGAAAAC 828
Query 832 AGTTACACATTCACAAAAGCCATAGGTGAGGCTGTAATTCACAGCAAGCGAGGAAACTTG 891
| ||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||
Sbjct 829 ACTTACACATTCACAAAGGCCATGGGTGAAACTATAATTCACAGCAAGCGAGGAGACTTA 888
Query 892 CCTGTAGTGATCATAAGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTTCCCTGGC 951
|| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 889 CCCGTAGTGATCATACGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTCCCCTGGC 948
Query 952 TGGATCCAAGGGACAAGAATGGCTGATCCAATCATCTTGGCTTATGCCAAAGGCCAGATT 1011
||||||||||| | |||||||| ||||||||||||| | || |||| |||||||| ||||
Sbjct 949 TGGATCCAAGGAATAAGAATGGTTGATCCAATCATCATCGCCTATGGCAAAGGCCTGATT 1008
Query 1012 TCTGACTTCTGGGCAGATCCT-CAATCTTTGATGGACATTATACCTGTTGACATGGTTGC 1070
|||| |||||| |||||| || || |||||||||||||||| ||||||||| ||||||||
Sbjct 1009 TCTGGCTTCTGTGCAGATTCTACA-TCTTTGATGGACATTACACCTGTTGATATGGTTGC 1067
Query 1071 AAACGCAGCAATAGCAGCCATGGCAAAGCATGGTT--G-TGGTGTCCCAGAGTTCAAAGT 1127
||||| |||||||||| ||||||||||||||||| | |||||||| |||| |||||||
Sbjct 1068 TAACGCGGCAATAGCAGTCATGGCAAAGCATGGTTCTGGTGGTGTCCAAGAGCTCAAAGT 1127
Query 1128 TTACAATTTAACTTCTTCATCTCATGT-GAA-CCCCATGCG-TGCTGGCAAATTGATAGA 1184
||||||| | ||||||||||||||| | ||| |||| |||| | |||| | |||| ||
Sbjct 1128 TTACAATGTCACTTCTTCATCTCAT-TCGAATCCCC-TGCGATT-TGGCGAGCTGATGGA 1184
Query 1185 CCTCTCTCATCAACATCTGTGTGACTTTCCATTGGAAGAAACAGTGATAGACTTAG-AGC 1243
||| ||| ||||||||||| || ||| ||| |||| |||||||||||| ||||||| | |
Sbjct 1185 CCTATCTTATCAACATCTGCGTAACTCTCCCTTGGGAGAAACAGTGATTGACTTAGCACC 1244
Query 1244 ATATGAAAATCCACAGTTCCTTAGAGGGTTTCA-CTTCTGCTTTATCGAAC-ACAATAAT 1301
||||||| |||||||||||||||| |||||| || || || ||| ||| | | |||
Sbjct 1245 -TATGAAATTCCACAGTTCCTTAGAATGTTTCAGCT-CTTCTGTATATAACGATA-TAAG 1301
Query 1302 AAAACAGGAAAGAGTGATTGATA-ATGAAGGAGGAGGATTGAGCACGAAGGGAAAGAGGA 1360
|||||||||||||| ||| | | || | | | ||||||| ||||||||| ||||
Sbjct 1302 AAAACAGGAAAGAG--ATTCACATAT-ATCCAC-A---TTGAGCAAGAAGGGAAACAGGA 1354
Query 1361 AGCTAAACTATTTTGTGTCCTTGGCAAAAACATATGAGCCTTACACATTCTTTCAAGCTC 1420
||| |||||||||||||| |||||| || |||| ||||||||| ||||||||||| |
Sbjct 1355 GGCTGGACTATTTTGTGTCCCTGGCAAGAATATATAAGCCTTACATGTTCTTTCAAGCGC 1414
Query 1421 GGTTTGACAACACCAATACAACAAGTCTGATACAGGAGATGTCAATGGAAGAGaaaaaaa 1480
|||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1415 GGTTTGACGACACCAACACAACAACTCTGATACAGGAGATGTCAATGGAAGAGAGAAAGA 1474
Query 1481 CGTTTGGGTTCGATATCAAAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATCTTC 1540
||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1475 TGTTTGAGTTTGATGCCAGAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATATTC 1534
Query 1541 CAGGTCTCAAAAAGG-AATT 1559
|||||||||||| || ||||
Sbjct 1535 CAGGTCTCAAAA-GGCAATT 1553
> Ahg938632 jgi|Araly1|938632|scaffold_502823.1
Length=245
Score = 134 bits (72), Expect = 3e-30
Identities = 162/200 (81%), Gaps = 28/200 (14%)
Strand=Plus/Plus
Query 329 TTGGGAAGATCTTCCTTCTGATGAGATCCAAGGATCAAGAATCAGCAAACAAGAGACTCT 388
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 TTGGGAAGATCTTCCTTCTGATGAGATCCAGGGATCAAGAATCAGCCAACAAGAGACTCT 60
Query 389 ACGATGAGATCATAAGCTCGGATCTGTTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTT 448
| |||||| | | || | | |||| || | |||| ||||| ||||
Sbjct 61 ATGATGAG--C-T----TC---T--G---AAGC-----AA--A--TGCACGGGAGTTCTT 96
Query 449 ACGAAGCTTTCATGAAGAGAAAGTTG-ATTCCAGTAATTGGAGACATTG-AGGAAGACAA 506
||||||| |||| |||||| ||||| || ||||||||||||||||||| || |||||||
Sbjct 97 ACGAAGCCTTCACGAAGAGCCAGTTGGAT-CCAGTAATTGGAGACATTGTAG-AAGACAA 154
Query 507 TCTAGGGATCAAATCTGAAA 526
|||||||||| |||||||||
Sbjct 155 TCTAGGGATCGAATCTGAAA 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5