BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56700.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg324181 jgi|Araly1|324181|fgenesh1_pm.C_scaffold_5001725 1672 0.0 Ahg938632 jgi|Araly1|938632|scaffold_502823.1 134 3e-30 > Ahg324181 jgi|Araly1|324181|fgenesh1_pm.C_scaffold_5001725 Length=1575 Score = 1672 bits (905), Expect = 0.0 Identities = 1363/1580 (86%), Gaps = 48/1580 (3%) Strand=Plus/Plus Query 1 ATGGCTACCACAAATGTCCTCGCCACGAGCCACGCCTTCAAATTGAATG-GTGTCAGCTA 59 ||||||| ||||||| |||| ||| | ||| || || |||||||| ||| | ||||||| Sbjct 1 ATGGCTATCACAAATCTCCTTGCCTCAAGCAACCCCGTCAAATTGGATGCCT-TCAGCTA 59 Query 60 CTTCTCCTCTTTTC-CCCGCAAACCTAACCACTACATGCCTCGTCGTCGTTT-ATCACAT 117 ||||||||| | || | |||||| ||||||||| || || | ||||||| | | || Sbjct 60 CTTCTCCTC-TCTCTCGGGCAAACAAAACCACTACTTGACT--T-GTCGTTTGA-CGCAG 114 Query 118 ACTACTCGTAGAGTCCAAACTTCGTGTTTTTATGGTGAGACGTCTTTTG-AAGCTGTAAC 176 || |||||||||||||||||||| |||| | || ||||||||| |||| ||||||| || Sbjct 115 ACGACTCGTAGAGTCCAAACTTCTTGTTGTAATCATGAGACGTC-TTTGAAAGCTGTGAC 173 Query 177 GTCGTTAGTTACGCCTAAGACAGAAACAAGTCGTAACAGTGACGGAATTGGAA-TCGTCC 235 |||| ||| | || | || | || ||| |||||||| |||||||| |||||| || ||| Sbjct 174 GTCGCTAGAGATGCATGAGGCTGACACACGTCGTAACTGTGACGGAGTTGGAATTC-TCC 232 Query 236 GTTTCTTAGAAGGGAAAAGCTATCTTGTTACTGGTGCAACAGGGTTTCTTGCCAAAGTGT 295 |||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 233 GTTTCTTAAAAGCGAAAAGCTATCTCGTTACTGGTGCAACAGGGTTTCTTGCTAAAGCGT 292 Query 296 TGATTGAGAAACTGTTGAGGGAAAGTCTTGAAATTGGGAAGATCTTCCTTCTGATGAGAT 355 ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| Sbjct 293 TGATTGAGAAACTGTTGAGGGCAAGTCCTGAGATTGGGAAGATCTTTCTTCTGATGAGAT 352 Query 356 CCAAGGATCAAGAATCAGCAAACAAGAGA-CTCTACGATGAGATCATAAGCTCGGATCTG 414 ||||||| ||||||||||| ||||||||| || || ||||||||||| ||||||||||| Sbjct 353 CCAAGGACCAAGAATCAGCCAACAAGAGACCT-TATGATGAGATCATTAGCTCGGATCTT 411 Query 415 TTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTTACGAAGCTTTCATGAAGAGAAAGTTG 474 ||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||| || Sbjct 412 TTCAAGCTTCTGAAGCAAACGCATGGCAGCTCCTACGAAGCCTTCATGAAGAGCAAGCTG 471 Query 475 ATTCCAGTAATTGGAGACATT-GAGGAAGACAATCTAGGGATCAAATCTGAAATAGC-AA 532 ||||||| ||||||||| ||| || |||||||| || |||||| ||||||||||||| | Sbjct 472 ATTCCAGGAATTGGAGATATTGGA-GAAGACAACCTCGGGATCGAATCTGAAATAGCTGA 530 Query 533 ACATGATCAGTGAGGAGATTGATGTTATTATCAGTTG-TGGTGGTCGTACAACATTCGAC 591 | ||||| ||||| |||| |||||| ||||||| ||| | |||||||||||||||| ||| Sbjct 531 A-ATGATTAGTGAAGAGACTGATGTCATTATCAATTGCT-GTGGTCGTACAACATTTGAC 588 Query 592 GACAGATACGATTCTGCCCTAAGTGTCAATGCTCTTGGACCGGCTTACGTGACTGGTAAG 651 ||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 589 GACAGATACGACTCTGCCATAAATGTCAATGCTCTTGGACCTGCTTACGTGACTGGTAAG 648 Query 652 AGAGAGGGGACAGTACTAGAAACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 711 | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 649 AAAGAGGGGATAGTACTAGAGACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 708 Query 712 AACATCAAATCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGAGAA 771 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 709 AACATCGACTCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGTGAA 768 Query 772 GAAATCAAGAAACTCAAAGAACTCGGTTTTGAAAGAGCTCAACACTATGGGTGGGAAAAT 831 |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 769 GAAACCAAGAAACTGAAAGAACTCGGTTTTGAAAGAGCTCAACATTATGGATGGGAAAAC 828 Query 832 AGTTACACATTCACAAAAGCCATAGGTGAGGCTGTAATTCACAGCAAGCGAGGAAACTTG 891 | ||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||| Sbjct 829 ACTTACACATTCACAAAGGCCATGGGTGAAACTATAATTCACAGCAAGCGAGGAGACTTA 888 Query 892 CCTGTAGTGATCATAAGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTTCCCTGGC 951 || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 889 CCCGTAGTGATCATACGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTCCCCTGGC 948 Query 952 TGGATCCAAGGGACAAGAATGGCTGATCCAATCATCTTGGCTTATGCCAAAGGCCAGATT 1011 ||||||||||| | |||||||| ||||||||||||| | || |||| |||||||| |||| Sbjct 949 TGGATCCAAGGAATAAGAATGGTTGATCCAATCATCATCGCCTATGGCAAAGGCCTGATT 1008 Query 1012 TCTGACTTCTGGGCAGATCCT-CAATCTTTGATGGACATTATACCTGTTGACATGGTTGC 1070 |||| |||||| |||||| || || |||||||||||||||| ||||||||| |||||||| Sbjct 1009 TCTGGCTTCTGTGCAGATTCTACA-TCTTTGATGGACATTACACCTGTTGATATGGTTGC 1067 Query 1071 AAACGCAGCAATAGCAGCCATGGCAAAGCATGGTT--G-TGGTGTCCCAGAGTTCAAAGT 1127 ||||| |||||||||| ||||||||||||||||| | |||||||| |||| ||||||| Sbjct 1068 TAACGCGGCAATAGCAGTCATGGCAAAGCATGGTTCTGGTGGTGTCCAAGAGCTCAAAGT 1127 Query 1128 TTACAATTTAACTTCTTCATCTCATGT-GAA-CCCCATGCG-TGCTGGCAAATTGATAGA 1184 ||||||| | ||||||||||||||| | ||| |||| |||| | |||| | |||| || Sbjct 1128 TTACAATGTCACTTCTTCATCTCAT-TCGAATCCCC-TGCGATT-TGGCGAGCTGATGGA 1184 Query 1185 CCTCTCTCATCAACATCTGTGTGACTTTCCATTGGAAGAAACAGTGATAGACTTAG-AGC 1243 ||| ||| ||||||||||| || ||| ||| |||| |||||||||||| ||||||| | | Sbjct 1185 CCTATCTTATCAACATCTGCGTAACTCTCCCTTGGGAGAAACAGTGATTGACTTAGCACC 1244 Query 1244 ATATGAAAATCCACAGTTCCTTAGAGGGTTTCA-CTTCTGCTTTATCGAAC-ACAATAAT 1301 ||||||| |||||||||||||||| |||||| || || || ||| ||| | | ||| Sbjct 1245 -TATGAAATTCCACAGTTCCTTAGAATGTTTCAGCT-CTTCTGTATATAACGATA-TAAG 1301 Query 1302 AAAACAGGAAAGAGTGATTGATA-ATGAAGGAGGAGGATTGAGCACGAAGGGAAAGAGGA 1360 |||||||||||||| ||| | | || | | | ||||||| ||||||||| |||| Sbjct 1302 AAAACAGGAAAGAG--ATTCACATAT-ATCCAC-A---TTGAGCAAGAAGGGAAACAGGA 1354 Query 1361 AGCTAAACTATTTTGTGTCCTTGGCAAAAACATATGAGCCTTACACATTCTTTCAAGCTC 1420 ||| |||||||||||||| |||||| || |||| ||||||||| ||||||||||| | Sbjct 1355 GGCTGGACTATTTTGTGTCCCTGGCAAGAATATATAAGCCTTACATGTTCTTTCAAGCGC 1414 Query 1421 GGTTTGACAACACCAATACAACAAGTCTGATACAGGAGATGTCAATGGAAGAGaaaaaaa 1480 |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 1415 GGTTTGACGACACCAACACAACAACTCTGATACAGGAGATGTCAATGGAAGAGAGAAAGA 1474 Query 1481 CGTTTGGGTTCGATATCAAAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATCTTC 1540 ||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1475 TGTTTGAGTTTGATGCCAGAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATATTC 1534 Query 1541 CAGGTCTCAAAAAGG-AATT 1559 |||||||||||| || |||| Sbjct 1535 CAGGTCTCAAAA-GGCAATT 1553 > Ahg938632 jgi|Araly1|938632|scaffold_502823.1 Length=245 Score = 134 bits (72), Expect = 3e-30 Identities = 162/200 (81%), Gaps = 28/200 (14%) Strand=Plus/Plus Query 329 TTGGGAAGATCTTCCTTCTGATGAGATCCAAGGATCAAGAATCAGCAAACAAGAGACTCT 388 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1 TTGGGAAGATCTTCCTTCTGATGAGATCCAGGGATCAAGAATCAGCCAACAAGAGACTCT 60 Query 389 ACGATGAGATCATAAGCTCGGATCTGTTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTT 448 | |||||| | | || | | |||| || | |||| ||||| |||| Sbjct 61 ATGATGAG--C-T----TC---T--G---AAGC-----AA--A--TGCACGGGAGTTCTT 96 Query 449 ACGAAGCTTTCATGAAGAGAAAGTTG-ATTCCAGTAATTGGAGACATTG-AGGAAGACAA 506 ||||||| |||| |||||| ||||| || ||||||||||||||||||| || ||||||| Sbjct 97 ACGAAGCCTTCACGAAGAGCCAGTTGGAT-CCAGTAATTGGAGACATTGTAG-AAGACAA 154 Query 507 TCTAGGGATCAAATCTGAAA 526 |||||||||| ||||||||| Sbjct 155 TCTAGGGATCGAATCTGAAA 174 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5