BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56710.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486111 jgi|Araly1|486111|fgenesh2_kg.5__2103__AT3G56710.1 1153 0.0
Ahg483187 jgi|Araly1|483187|fgenesh2_kg.4__2247__AT2G41180.1 154 1e-36
> Ahg486111 jgi|Araly1|486111|fgenesh2_kg.5__2103__AT3G56710.1
Length=807
Score = 1153 bits (624), Expect = 0.0
Identities = 751/809 (93%), Gaps = 21/809 (3%)
Strand=Plus/Plus
Query 27 AAACATCTGAATTCTCTTACAGGAACCGAACATGGAGTCATCATCGTCGACTTTTCTCAC 86
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 AAACATCTGAATTCTCTTACAGGAACCGAACATGGAGTCATCATCATCGACGTTTCTCAC 60
Query 87 CACGACAAGCTTAGACAAGAAAAAACCATCTCCGGTTTCAAGAAAATCACCAAAGCAAAA 146
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCGACAAGCTTAGACAAGAGAAAACCATCTCCGGTTTCAAGAAAATCACCAAAGCAAAA 120
Query 147 GAAGAAGACGACTTCGACGAATAAACCCATCAAAGTTCGTTACATCTCAAACCCCATGAG 206
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 GAAGAAGACGACTTCGACGAACAAACCCATCAAAGTCCGTTACATCTCAAACCCCATGAG 180
Query 207 AGTTCAAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCACAGGCCAAGACGC 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTTCAAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCACAGGCCAAGACGC 240
Query 267 CGTCGATCTTCAACCGGAGCCCATCTATTCCCCTTCCTCCGACGACCACAACCTTTCTCC 326
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTCGATCTTCAACCGGAGCCTATCTATTCCCCTTCCTCCGACGACCACAACCTTTCTCC 300
Query 327 A----C-----CGGCGGAGAATCTTGCGCCACGTGTTCTTCATCAGGAGCCGTTCGGTGA 377
| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACCGTCGTTTACGGCGGAGAATCTTGCGCCACGTGTTCTTCATCAGGAGCCGTTCGATGA 360
Query 378 GAGAGACAGTGATTGTTA--TG-AGCCGTTGAATGCGGAAGACATGTTTTTACCTGATCA 434
||||| |||||| ||||| || ||||||||||| |||||| |||||||||||||||||
Sbjct 361 GAGAGTCAGTGACTGTTACGTGCCGCCGTTGAATGGGGAAGAGATGTTTTTACCTGATCA 420
Query 435 GATGTCGGCAGGTTTTTCTGGGTTTTTCTCTAATGGGTTTTACAATGTCAATGACTTTGG 494
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GATGTCGGCAGGTTTTTCTGGGTTTTTCTCTAATGGGTTTTACAATGTGAATGACTTTGG 480
Query 495 AAGCATCGATTCTATGTGATAATCTTTCAGAGTTTTTATTAGGGGTTTCATCTAG-TAGA 553
|||||||||||||||||||||||||| | |||||||| ||||||||||||| || |||
Sbjct 481 AAGCATCGATTCTATGTGATAATCTTACGGAGTTTTTCTTAGGGGTTTCAT-TAACTAGG 539
Query 554 TATATATCATTATGATATCGATACATAAATTTAACCCCCAAATTGATACATGGATATGTT 613
|| |||| ||||||| ||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 540 TACATATAATTATGAAATCCATACATGAATTTAACTCCCAAATTGATACATGGATATGTT 599
Query 614 AATTACTATAGGGTTTGGGATGCGAATTAGTATATGAGTAAGTTGTTTTGTAAACAGttt 673
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 AATTACTATAGGGTTTGTGATGCGAATTAGTATATGAGTAAGTTATTTTGTAAACAGTTT 659
Query 674 ttttttcttaaatttgtttgtttgttttttCTTACATCAAAACTTCGGTAATGTATGAA- 732
||| | ||||||||| |||||||||||| ||| |||||||| |||| ||||||||||||
Sbjct 660 TTTCT-CTTAAATTTTTTTGTTTGTTTTGTCTCACATCAAAGCTTCTGTAATGTATGAAA 718
Query 733 CATATTTTCTATTTAATCAAGAAACATGTGATAATCTAAAGTTAGCG-ATTAATAAGCCT 791
|||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 719 CATATTTTTTATTTAATCAAGAAACATGTGATAATCTTAAGTTAGCGGATTAGTAAGCCT 778
Query 792 ---T-CAAGTTCATATTGAGTATTTTCAT 816
| ||||||||||||||| ||||||||
Sbjct 779 AGCTTCAAGTTCATATTGAGCATTTTCAT 807
> Ahg483187 jgi|Araly1|483187|fgenesh2_kg.4__2247__AT2G41180.1
Length=837
Score = 154 bits (83), Expect = 1e-36
Identities = 128/150 (85%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 134 CACCAAAGCAAAAGAAGAAGACGACTTCGACGAATAAACCCATCAAAGTTCGTTACATCT 193
|||| ||||| |||| |||| | || |||| || |||||||||||||| |||||||| |
Sbjct 119 CACCGAAGCAGAAGAGGAAGTCAACGACGACCAACAAACCCATCAAAGTCCGTTACATAT 178
Query 194 CAAACCCCATGAGAGTTC-AAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTC 252
| ||||| ||||||| || | |||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CTAACCCGATGAGAG-TCGAGACTTGTCCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTC 237
Query 253 ACAGGCCAAGACGCCGTCGATCTTCAACCG 282
|| || |||||||||| |||||| | ||||
Sbjct 238 ACCGGTCAAGACGCCGCCGATCTACCACCG 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5