BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56720.3
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486112 jgi|Araly1|486112|fgenesh2_kg.5__2104__AT3G56720.1 1526 0.0
> Ahg486112 jgi|Araly1|486112|fgenesh2_kg.5__2104__AT3G56720.1
Length=1328
Score = 1526 bits (826), Expect = 0.0
Identities = 964/1032 (93%), Gaps = 4/1032 (0%)
Strand=Plus/Plus
Query 196 TCAAGCTCCATGGACACCGAACTGAATTCTCCTCCGCATGATGATGGTGGTGATACCACT 255
|||||||||||||| |||||||||||||| || ||||||| |||||| |||||||||||
Sbjct 4 TCAAGCTCCATGGATACCGAACTGAATTCACCACCGCATGGTGATGGAGGTGATACCACA 63
Query 256 ACCGCTTTTCGAAAGCCTTCCAATGACGGGACTAGCAGAAAATATCGCCGTCGAGCTTTA 315
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 64 ACCGCTTTTCGAAAGCCTTCCAATGACGGGGCTAGCAGAAAATATCGTCGTCGAGCTTTA 123
Query 316 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 183
Query 376 AAGCATTCTAGGAAAGATTCTGAACCAGTTCATGTGAGGAAAGAGGATAGATGGGAATCT 435
||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||
Sbjct 184 AAGCATTCTAGGAAAGATTCTGAACCACTTCATGCGAGGAAAGAGGATAGGCGAGAATCT 243
Query 436 GATCGCAGTCGTTATGGTAGAGGAGGTGTTGATTCACATAGACATGATAGGTACTCTAGG 495
||||||||||| ||||||||||| ||| ||||||| |||| || ||||||||||||||||
Sbjct 244 GATCGCAGTCGCTATGGTAGAGGTGGTATTGATTCGCATAAACGTGATAGGTACTCTAGG 303
Query 496 GATGATAATTACGGATATAAGCGTGATGAGTATAACAGACATGGGAGGGATGCGCGTTC- 554
|||||||||||||||| ||||||||||||||| |||||||||| ||||||||| | ||
Sbjct 304 GATGATAATTACGGATCTAAGCGTGATGAGTACAACAGACATGAGAGGGATGCAC-ATCG 362
Query 555 TACTAGCCGTGATTCAAGAGGTGGCAGACATTCTGACCGTAGAAGAGTGGAGACTGAATA 614
| |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||| |
Sbjct 363 TTCTAGCCATGATCCAAGAGGTGGCCGACATTCCGACCGCAGAAGAGTGGAGACTGAACA 422
Query 615 TAGCAGGTTAAGAAATGACTCAGACAGA-AGTTCCCATGATAAGTATAGCAACTCTGGAC 673
|||||||| ||||||||| ||||||||| | ||||| |||||||||||||||||||||||
Sbjct 423 TAGCAGGTCAAGAAATGATTCAGACAGACA-TTCCCGTGATAAGTATAGCAACTCTGGAC 481
Query 674 ATAGAGTCAAAAGTAACGAGAAAGGTGAAGATTTGTCATCTGGTAGGAGACACTCAGACT 733
|||||||||| ||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 482 ATAGAGTCAATAGTGAGGAGAAAGGTGAAGGTTTGTCATCTGGTAGGAGACACGCAGACT 541
Query 734 CAAGAGTGGAGGATAATGAGAAAAGAGGTTCTCGCTGGGGTTTTGGTGACCGTCATTCCC 793
||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 542 CAAGATTAGAGGATAATGAGAAAAGAGGTTCTCGCTGGAGTTTTGGTGACCGCCATTCCC 601
Query 794 GTGTTGAAAGAAAGGAACATGAGGACCCTGAGATTAGCAAGGAGAAGGAGGTTCATGTCA 853
||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 602 GTGATGAAAGAAAGGAACATGAGGACCCTGAGATTAGAAAGGAGAAGGATGTTCATATCA 661
Query 854 AATCTTCAAGAGACCGTTCTGATGGGAAATGTTTGGCTACAGAGGATCGAGATACTCATT 913
||||| |||||||||||||||||| |||||| |||| || ||| |||||||||||||||
Sbjct 662 AATCTCCAAGAGACCGTTCTGATGATAAATGTATGGCCACTGAGAATCGAGATACTCATT 721
Query 914 CTAAGAAACTGAAGGGTTTCATATCAGACAAGTTTACTACTGGCAATACTAATGAAGAGA 973
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 722 CTAAGAAACTGAAGGGGTTCATATCAGAGAAGTTTACTACTGGCAATACTAATGAAGAGA 781
Query 974 AACAGACATCAATCTTAAAGCCTTCCCCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 1033
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 782 AACAGACGTCAATCTTAAAGCCTGCACCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 841
Query 1034 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 901
Query 1094 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 961
Query 1154 GTTGGGATAATGCGAGTGCGCTAATTGGTGACCCTGAACGGCAAGAAAAGTTCAACAAAC 1213
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 962 GTTGGGATAATGCTAGTGCGCTAATTGGTGACCCTGAACGACAAGAAAAATTCAACAAAC 1021
Query 1214 TTATGAGTCTGA 1225
||||| || |||
Sbjct 1022 TTATGGGTGTGA 1033
Score = 466 bits (252), Expect = 2e-130
Identities = 286/303 (94%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1249 GGGTGTGAAAGCGAAGGTAGTAAACCAAGAGCAAAACCTGGGCGAAGTCGAGGCCGAGAA 1308
||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||
Sbjct 1026 GGGTGTGAAAGCGAATATAGTAAACCAAGAGCAGAACCTGAGCGAAGTCGAGGTGGAGAA 1085
Query 1309 GCAGAAAGAGTTGCAGATGGATCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1368
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GCAGAAAGAGTTGCAGATGGACCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1145
Query 1369 TGGACGAACAGTAGGGTTAGGTCTTTGAACCTCTTTGGTAAATTGTTCGCATACTCTTGT 1428
||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||
Sbjct 1146 TGGGCGAACAGTAGGGTTAGGTCTTTGAACCTTTTTGGTAAATTATTCTCATACTCTCGT 1205
Query 1429 CTCCTTCTAAGCAATCTTTTAGCATCTTCTTTTTGTACTCTACTACTCTTGCTAAATCCC 1488
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1206 CTCCTTCTAAGCAATCTTGTAGCATCTTCTTTTTGTACTCTACTACTCTTGCCAAATCCC 1265
Query 1489 TTTATTTCAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1548
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TTGATCACAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1325
Query 1549 CCC 1551
|||
Sbjct 1326 CCC 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5