BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56740.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938635 jgi|Araly1|938635|scaffold_502826.1 1561 0.0
> Ahg938635 jgi|Araly1|938635|scaffold_502826.1
Length=923
Score = 1561 bits (845), Expect = 0.0
Identities = 899/925 (97%), Gaps = 4/925 (0%)
Strand=Plus/Plus
Query 240 TCCTCTGTTCACCCAACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTCTGTTCACCCGACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 60
Query 300 ACGAAAGCCTTCGTTATTACGAGCGCTCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 359
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ACCAAAGCCTTCGTTATCACGAGCGCCCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 120
Query 360 TCTTCTAAGCTCGGTTTGTCTTACCAGGACATTTTTGAGAAATTTCGGATATGGAAGTTA 419
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 TCTTCTAAGCTCGGGTTGTCTTACCAGGATATTTTTGAGAAGTTTCGGATATGGAAGTTA 180
Query 420 ATCATGTCCACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGCTA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 ATCATGTCGACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGTTA 240
Query 480 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTCGGTTTTTATCTTG 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTTGGTTTTTATCTTG 300
Query 540 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 360
Query 600 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 420
Query 660 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 480
Query 720 TCATTCATATATCTCGCAGGAGTGCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TCATTCATATATCTCGCAGGAGTTCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 540
Query 780 CCTGGAATTTGCGGCATAATTGCGGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 839
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTGGAATTTGCGGCATAATTGCCGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 600
Query 840 AAGGCAAAGTTCCCTGAGTTTGTGGCTTCGTTCTTCTCGCGGCTTTCTTTTCCCTCTTTC 899
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 AAGGCAAAGTTCCCCGAGTTTGTGGCTTCATTCTTTTCGCGGCTTTCTTTTCCCTCTTTC 660
Query 900 GGTAACTCTCCTCCTCCAGCACCAAGCAGGAACATCGTTGGGACTATATCACCTAACACA 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GGTAACTCTCCTCCTCCAGCACCAAGCAGAAACATCGTTGGGACTATATCACCTAACACA 720
Query 960 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCC-GTTGCCCTCAAGTGTGGAGCCATCTGA 1018
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 721 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCAGT-GCCGTCAAGTGTGGAGCCATCTGA 779
Query 1019 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCGCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCACT 839
Query 1079 TGTGCACGCCAGGAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAGTCCCA 1138
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 TGTCCACGCCAGAAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAATCCCA 899
Query 1139 CTAACTTAAAAAAGG-TTTTACTCT 1162
|||| || ||||||| |||||||||
Sbjct 900 CTAA-TTGAAAAAGGGTTTTACTCT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5