BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56750.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486114 jgi|Araly1|486114|fgenesh2_kg.5__2106__AT3G56750.1 2462 0.0
Ahg483184 jgi|Araly1|483184|fgenesh2_kg.4__2244__AT2G41150.2 1098 0.0
> Ahg486114 jgi|Araly1|486114|fgenesh2_kg.5__2106__AT3G56750.1
Length=1594
Score = 2462 bits (1333), Expect = 0.0
Identities = 1532/1623 (94%), Gaps = 33/1623 (2%)
Strand=Plus/Plus
Query 31 AAGCCGAGAAGCATTATCTGAATCTGAGCTATCTCTGGATCAGCTTGGGATCCGCCACGT 90
|||||||||||||||||| | | || | | ||||||||||||| ||||||||||||||
Sbjct 1 AAGCCGAGAAGCATTATC-GGAGCT-ATC-ATCTCTGGATCAGGTTGGGATCCGCCACAA 57
Query 91 CACTTCTGACAGCCGCCGGAGATGAACCTCACGTGACCGTTCTTCAGATCGGATCTTCTG 150
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 58 CACTTCTGACAGCTGCCGGAGACGAACCTCACGTGACCGTTCTTCAGATCGGGTCTTCTG 117
Query 151 TGTGTAACCGTCGAGGAGGACtcttcttcttcttcttcttcttcttcttcttcttcCTCG 210
||| |||||||||| || | | | |||||||||||||||||||| | || | |||
Sbjct 118 TGTTTAACCGTCGACGA-G----TAC-TCTTCTTCTTCTTCTTCTTC--C-TCGT--TCG 166
Query 211 CTCACATTGTTCAGTCTTGAAACACTCTAATGGCGACAATGAGCAAAGCTCAAAGGACCA 270
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 167 ----CATTGTTCAGTCTTGAAACACTTTAATGGCGACAATGAGCAAAGCTCAAAGGACCA 222
Query 271 AACCCACTTCTGGATCTCAGCGTCTTGTTCTGTTCTGTATAGTTGTGTTCTCATTCCTCC 330
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 223 AACCCACTCCTGGATCTCAGCGTCTTGTTCTGTTATGTATAGTTGTGTTCGCATTCCTCC 282
Query 331 TCCT-CTTCTCTTCGGTGATCTCCACCGGCAAATTGGGATTGCCTTATCAACAAACCCTA 389
|||| | |||||||||||||||||||||| ||| | |||||||| |||||||||||||||
Sbjct 283 TCCTGC-TCTCTTCGGTGATCTCCACCGGAAAACTAGGATTGCCGTATCAACAAACCCTA 341
Query 390 ATCGACTATTTCGTGTGGTCTCCTCGTGGTAAGAGACAGCATTCGTTGTCGGAGAAGTAC 449
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 342 ATCGATTATTTCGTGTGGTCTCCTCGTGGTAAGAGACAGCATTCATTGTCGGAGAAGTAC 401
Query 450 TTGTATTGGGGAAACAGAATCGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTGTATTGGGGAAACAGAATCGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTG 461
Query 510 GGTCACCAAGAATCTAGCCTCAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GGTCACCAAGAATCTAGCCTCAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACC 521
Query 570 TTTGTAATGCCTTCTGGAATGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAAT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTTGTAATGCCTTCTGGAATGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAAT 581
Query 630 CGATCTGATAACAAAACTACAGAGGAAGGTTGGCTTGGGAGCTCTTGTGCAATGGACTCA 689
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 582 CGATCTGATAACAAAACTACAGAGGAAGGTTGGGTCGGGAGCTCTTGTGCAATGGACTCC 641
Query 690 TTGTATGACATTGACCTCATATCTGAGAAGATACCGGTGATATTAGATGACTCTAAGACA 749
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 642 TTGTATGACATTGACCTCATATCTGAGAAGATACCAGTGATATTAGATGACTCCAAAACA 701
Query 750 TGGCATATTGTTCTATCCACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGTTAGT 809
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGCATATTGTTCTGTCCACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGTTAGT 761
Query 810 GGAGTCACTCGGCATAGGCTTAAAGAGAGTCACTACTCAAATCTCTTGATCATTAACCGA 869
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGAGTCAGTCGGCATAGGCTAAAAGAGAGTCACTACTCAAATCTCTTGATCATTAACCGA 821
Query 870 ACCGCAAGTCCTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCGCTGTC 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ACCGCAAGTCCTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCGCTGTC 881
Query 930 ATGCTTCCTTATTCATTTCTCCCTAATATGGCAGCTGCAAAATTGAGAAACGCCGCAGAA 989
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 882 ATGCTTCCTTATTCATTTCTCCCTAATATGGCAGCTGCGAAATTGAGAAACGCCGCCGAA 941
Query 990 AAGATAAAAGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGTGGGGACAAACTG 1049
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 942 AAGATAAAAGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGAGGGGACAAACTA 1001
Query 1050 AAAACCAGAAAAGACAGATTTGGAGTTGAAAGGATTCAGTTTCCTCATCTAGACAGAGAT 1109
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1002 AAAACCAGAAAAGACAGATTTGGAGTTGAAAGGATTCAATTTCCTCATCTAGACAGAGAT 1061
Query 1110 ACGCGCCCTGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCAAGAGGAAGGACTCTT 1169
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1062 ACGCGCCCTGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCACGAGGAAGGACTCTT 1121
Query 1170 TTTATTGGTTCTAATGAGAGGAAGCCTGGTTTTTTCTCTCCTCTCGCGGTCAGGTACAAA 1229
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1122 TTTATTGGTTCTAATGAAAGGAAGCCTGGTTTTTTCTCTCCTCTCGCCATCAGGTACAAA 1181
Query 1230 CTGGCTTACTCATCGAACTTTAGCGAGATTCTGGATCCTATAATCGAGAATAATTACCAG 1289
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1182 CTGGCTTACTCATCGAATTTTAGCGAGATCCTGGATCCTATAATCGAGAATAATTACCAG 1241
Query 1290 TTATTCATGATGGAGAGACTGGTAATGATGGGAGCCAAAACATACTTCAAAACATTCAAA 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1242 TTATTCATGATGGAGAGACTGGTAATGATGGGAGCCAAAACATACTTCAAAACATTTAAA 1301
Query 1350 GAGTACGAAACAGATCTCACCTTAACTGATGATCCTAAGAAGAATAAGAACTGGGAAATA 1409
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1302 GAGTACGAAACAGATCTCACCTTAACTGATGATCCTAAAAAGAACAAGAACTGGGAAATA 1361
Query 1410 CCAGTATACACCATGGATGAAAGAAGAGAAGAAGCAAGCTAAAGTTTGTGCGTCTTTACA 1469
||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1362 CCAGTGTACACCATGGATGAAAGAAAAGAAGAAGCAAGCTAAAGTTTGTGC--CTTTACA 1419
Query 1470 AGGTCTCAT---AATTTAGTCTTATGATTTCCCACGTTCTTGTAGTCAAATGCTAAATCA 1526
||||||||| || |||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 1420 AGGTCTCATTGCAACTTAGTCTTGTAACTTCCCACGTTCTTCTAGTCAAATGCTAAATCA 1479
Query 1527 GTGTATGTAAAAACAAGAACAGAGTTGCAGAGTTTAGAGGTTTTTCATTGGCTTTCCAGA 1586
|||||||||||||||||| ||||||| | | ||||||||||||||||||| ||| |
Sbjct 1480 GTGTATGTAAAAACAAGAGCAGAGTT--A---T--AGAGGTTTTTCATTGGCTT-CCAAA 1531
Query 1587 GGGCTCTTGTGTAAATGGGTTTTGTAAGAACAGATGTAGTAAAATCTGTGTTTTTTGAAG 1646
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1532 CGGTTCTTGTGTAAATGGGTTTTGTAAGAACAGATGTAGTAAGATCTGTGTTTTTTGAAG 1591
Query 1647 TTT 1649
|||
Sbjct 1592 TTT 1594
> Ahg483184 jgi|Araly1|483184|fgenesh2_kg.4__2244__AT2G41150.2
Length=1381
Score = 1098 bits (594), Expect = 0.0
Identities = 1032/1240 (83%), Gaps = 44/1240 (4%)
Strand=Plus/Plus
Query 238 TAATGGCGACAATGAGC-AAA-GC-TCAAAGGACCAAACCCACTTCTG-GATCTCAGCGT 293
||||||||||||||||| ||| | ||| ||| | ||| |||| || | ||||||| |
Sbjct 3 TAATGGCGACAATGAGCAAAACCCATCATAGGTCAAAAGCCAC-TCCGAGATCTCAAAGA 61
Query 294 CTTGTTCTGTTCTGTATAGTTG-TGTTCTCATTCCTCCTCCTCTTCTCTTCGGTGATCTC 352
||||||||||| |||||||| | ||| |||| |||||||| ||| |||||||||||||
Sbjct 62 CTTGTTCTGTTATGTATAGTCGCCGTT-GCATTTCTCCTCCTTTTCACTTCGGTGATCTC 120
Query 353 CACCGGCA-AATTGGGATTGCCTTATC-AACAAACCCTAATCGACTATTTCGTGTGGTCT 410
|||||| | ||||| || || |||| || ||||||||| | ||||||||| ||||
Sbjct 121 CACCGG-AGGATTGGCTTTACCGTATCGGAC-AACCCTAATTGGTTATTTCGTGAGGTCA 178
Query 411 CCTCGTGGTAAGAGACAGCATTCG-TTGTCGGAGAAGTACTTGTATTGGGGAAACAGAAT 469
|||| | |||||||| || | | ||||| || ||||||||||||||||||||||||||
Sbjct 179 ACTCGAAGCAAGAGACAACA-TAGTTTGTCCGACAAGTACTTGTATTGGGGAAACAGAAT 237
Query 470 CGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTGGGTCACCAAGAATCTAGCCT 529
|||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 238 CGATTGTCCTGGTAAGAACTGCGAGACCTGTGCCGGTTTAGGTCACCAAGAATCTAGCCT 297
Query 530 CAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACCTTTGTAATGCCTTCT-GGAA 588
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 298 TAGATGTGCCCTTGAAGAAGCCATGTTTCTTAACAGGACTTTTGTAATGCCATCTCGGA- 356
Query 589 TGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAATCGATCTGATAACAAAACTA 648
||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 357 TGTGCATCAATCCAATACATAACAAGAAAGGTATACTTAATCGATCTGATAATGAAACTA 416
Query 649 CAGAGGAAGGTTGGCTTGGGAGCTCTTGTGCAATGGACTCATTGTATGACATTGACCTCA 708
|||||||| ||||| | ||||| ||||||||||| ||| ||||||| ||||| ||||
Sbjct 417 CAGAGGAAAGTTGGGAAGTTAGCTCGTGTGCAATGGAATCACTGTATGATATTGATCTCA 476
Query 709 TATCTGAGAAGATACCGGTGATATTAGATGACTCT-AAGACATGGCATATTGTTCTATCC 767
| |||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||
Sbjct 477 TCTCTGAGAAGATACCTGTGATCTTGGATGACTCAGAA-ACATGGCACATTGTGCTATCG 535
Query 768 ACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGT-TAGTGGAG-TCACTCGGCAT- 824
|| |||||||| ||| |||| |||||| ||| ||||| || ||| | | || || ||
Sbjct 536 ACGAGTATGAAATTGAAAGAACGAGGGAGTGCGCATGTATA-TGGGGCTAACA-GGAATG 593
Query 825 AGGCTTAAAGAGAGTC-A-CTACT---CAAATCTCTTGATCATTAACCGAACCGCAAGTC 879
|| || ||| | | || | | ||| ||||||| ||| ||||||||||||| |||||||
Sbjct 594 AG-CT-AAATA-ACTCCAGCCACTTTACAAATCTTTTGCTCATTAACCGAACTGCAAGTC 650
Query 880 CTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCG-CTGTCATGCTTCCT 938
| ||||||||||| ||||| ||||| ||| || | |||||||||| | ||||||||||||
Sbjct 651 CCCTTGCATGGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGAC-GTCATGCTTCCT 709
Query 939 TATTCATTTCTCCCTAATATGGCAGC-TGCAAAATTGAGAAACGCCGCAGAAAAGATAAA 997
|||||||||||||| ||||||||||| | ||| ||||||| | || || |||||||||||
Sbjct 710 TATTCATTTCTCCCAAATATGGCAGCAT-CAAGATTGAGAGATGCTGCCGAAAAGATAAA 768
Query 998 AGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGTGGGGACAAACTGAAAACCAG 1057
||||||||||||| ||| ||||| ||||| |||||||| || |||||||||||||| ||
Sbjct 769 GGCACAACTTGGTGTTTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAG 828
Query 1058 AAAAGACAGATTTGGAGTTGAAAGGATTCAGTTTCCTCATCTAGACAGAGATACGCGCCC 1117
||||||||| ||| | |||||||| | ||||||||| ||| |||||||||| || || ||
Sbjct 829 AAAAGACAGGTTTCGCGTTGAAAGAACTCAGTTTCCACATTTAGACAGAGACACACGGCC 888
Query 1118 TGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCAAGAGGAAGGACTCTTTTTATTGG 1177
||||| ||| || |||| || |||||| |||||| |||| ||||||||||||| ||
Sbjct 889 AGAGTTCATCATTGGCAGAATTCAGAAGCAAATCCCACCAGGACGGACTCTTTTTATCGG 948
Query 1178 TTCTAATGAGAGGAAGCC-TGGTTT-TTTCTCTCCTCTCGCGGTCAGGTACAAACTGGCT 1235
|||||||||||| || || ||| || ||| || ||||| || ||||||| ||| |||||
Sbjct 949 TTCTAATGAGAG-AACCCCTGGATTCTTT-TCACCTCTAGCTATCAGGTATAAAGTGGCT 1006
Query 1236 TACTCATCGAACTTTAGCGAGATTCTGGATCCTATAATCGAGAATAATTACCAGTTATTC 1295
|| |||||||| ||||| |||||| ||||||| |||||||| || ||||| ||||| |||
Sbjct 1007 TATTCATCGAATTTTAGTGAGATTTTGGATCCGATAATCGAAAACAATTATCAGTTGTTC 1066
Query 1296 ATGATGGAGAGACTGGTAATGATGGGAGCCAAA-ACATACTTCAAAACATTCAAAGAGTA 1354
||| ||||||| ||| |||||||||| || ||| |||| |||||||||||| | ||||||
Sbjct 1067 ATGGTGGAGAGGCTGATAATGATGGGTGC-AAAGACATTCTTCAAAACATTTAGAGAGTA 1125
Query 1355 CGAAACAGATCTCACCTTAACTGATGATCCTAAGAAGAATAAGAACTGGGAAATACCAGT 1414
|||||| |||||||| || || |||||||| || ||||| ||||| ||||||||||||||
Sbjct 1126 CGAAACGGATCTCACTTTGACAGATGATCCGAAAAAGAACAAGAATTGGGAAATACCAGT 1185
Query 1415 ATACACCATGGATGAAAG--AAGAGAAGAAGCAAGCTAAA 1452
|||||||||||| |||| || ||||| |||||||||||
Sbjct 1186 TTACACCATGGAT-AAAGGCAA-AGAAGCAGCAAGCTAAA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5