BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56760.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value Ahg486115 jgi|Araly1|486115|fgenesh2_kg.5__2107__AT3G56760.1 3013 0.0 Ahg483182 jgi|Araly1|483182|fgenesh2_kg.4__2242__AT2G41140.1 1764 0.0 > Ahg486115 jgi|Araly1|486115|fgenesh2_kg.5__2107__AT3G56760.1 Length=1813 Score = 3013 bits (1631), Expect = 0.0 Identities = 1757/1818 (97%), Gaps = 7/1818 (0%) Strand=Plus/Plus Query 1 ATGGGGCTGTGTCATGGGAAACCTATCGAACAACAATCGAAGAATCTCCCAATCTCCAAT 60 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1 ATGGGGCTGTGTCATGGGAAACCTATCGAACAGCAATCGAAGAATCTCCAAATCTCCAAT 60 Query 61 GAAATCGAAGAGACACCTAAGAATTCATCTCAGAAGGCGAAATCTTCAGGCTTTCCGTTT 120 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GAAATCGAAGAGTCACCTAAGAATTCATCTCAGAAAGCGAAATCTTCAGGCTTTCCGTTT 120 Query 121 TATAGTCCAAGCCCTTTACCTAGTCTCTTCAAAACCTCACCTGCTGTGTCATCCTCCAGC 180 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 121 TATAGTCCAAGTCCATTACCTAGTCTCTTCAAAACCTCACCAGCTGTGTCATCCTCGAGC 180 Query 181 GTGAGCTCCACGCCACTTCGTATCTTTAAGCGACCTTTCCCACCTCCATCACCAGCTAAG 240 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 181 GTGAGCTCCACGCCACTTCGTATCTTCAAGCGACCTTTCCCACCTCCCTCACCAGCTAAG 240 Query 241 CATATACGAGCTCTCCTCGCGCGTCGTCACGGTTCTGTTAAGCCCAATGAAGCTTCGATC 300 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 CATATACGAGCTCTCCTCGCGCGTCGTCACGGTTTTGTTAAGCCCAATGAAGCTTCGATC 300 Query 301 CCTGAAGGTAGTGAATGTGAGGTTGG-CTTGGACAAGAAATTTGGTTTCTCTAAGCAGTT 359 |||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct 301 CCTGAAGGTAGTGAGTGTGAGGTTGGCCTT-GACAAGAAATTTGGGTTCTCTAAGCAGTT 359 Query 360 TGCTTCACACTACGAGATTGACGGTGAGGTGGGTCGAGGGCATTTTGGTTATACTTGCTC 419 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 360 TGCTTCACACTACGAGATTGATGGTGAGGTGGGTCGAGGGCATTTTGGGTATACTTGCTC 419 Query 420 TGCTAAGGGGAAAAAAGGTAGCTTGAAAGGTCAAGATGTGGCTGTCAAAGTTATTCCCAA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGCTAAGGGGAAAAAAGGTAGCTTGAAAGGTCAAGATGTGGCTGTCAAAGTTATTCCCAA 479 Query 480 ATCCAAGATGACTACGGCAATTGCAATTGAGGATGTTAGAAGAGAAGTGAAGATATTGCG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATCCAAGATGACTACGGCAATTGCAATTGAGGATGTTAGAAGAGAAGTGAAGATATTGCG 539 Query 540 GGCTTTAACTGGTCACAAGAACCTAGTCCAGTTCTATGACGCCTTCGAAGATGATGAAAA 599 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GGCTTTGACTGGTCACAAGAACCTAGTCCAGTTCTATGACGCCTTCGAAGATGATGAAAA 599 Query 600 TGTTTACATTGTCATGGAGTTATGCCAAGGCGGTGAACTCTTGGACAAAATACTTCAAAG 659 |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 600 TGTTTACATTGTGATGGAGTTATGCCAAGGCGGTGAACTTTTGGACAAGATACTTCAAAG 659 Query 660 GGGAGGCAAATACTCAGAAGTAGATGCTAAAAAAGTAATGATTCAGATTCTTAGTGTAGT 719 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 660 GGGAGGCAAATACTCAGAAGTAGATGCTAAAAAAGTAATGGTTCAGATTCTTAGTGTAGT 719 Query 720 AGCCTACTGTCATCTTCAAGGCGTGGTTCACCGTGACCTCAAACCTGAGAATTTTCTCTT 779 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 720 AGCCTACTGTCATCTTCAAGGCGTGGTTCATCGTGACCTCAAACCAGAGAATTTTCTCTT 779 Query 780 CACCACAAAGGATGAGTCTTCCCCTTTGAAAGCCATTGATTTTGGTCTCTCCGACTATGT 839 ||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 780 CACTACAAAGGATGAGTCTTCTCCTCTGAAAGCCATTGATTTTGGTCTCTCTGACTATGT 839 Query 840 CAGGCCAGATGAGAGGTTGAATGACATTGTAGGAAGTGCTTATTACGTGGCCCCTGAAGT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CAGGCCAGATGAGAGGTTGAATGACATTGTAGGAAGTGCTTATTACGTGGCCCCTGAAGT 899 Query 900 TTTACACCGTACATATGGAACTGAGGCAGATATGTGGAGTATTGGAGTGATTGCTTATAT 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TTTACACCGTACATATGGAACTGAGGCAGATATGTGGAGTATTGGAGTGATTGCTTATAT 959 Query 960 ACTACTCTGTGGTAGCCGGCCCTTTTGGGCCCGTTCTGAATCTGGAATCTTTAGAGCTGT 1019 ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 960 ACTTCTCTGTGGTAGCCGGCCATTTTGGGCCCGTTCTGAATCTGGAATCTTCCGAGCTGT 1019 Query 1020 TCTTAAAGCAGAACCCAATTTCGAAGAAGCTCCTTGGCCATCTCTTTCACCTGACGCTGT 1079 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1020 TCTTAAAGCAGAACCCAATTTCGAAGAAGCTCCTTGGCCATCTATTTCACCTGACGCTGT 1079 Query 1080 AGATTTTGTGAAACGTTTGTTAAATAAAGATTACCGTAAGAGACTAACTGCTGCACAGGC 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AGATTTTGTGAAACGTTTGTTAAATAAAGATTACCGTAAGAGACTAACTGCTGCACAGGC 1139 Query 1140 TTTATGCCATCCGTGGCTGGTTGGCTCACATGAATTAAAGATACCATCTGATATGATCAT 1199 ||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1140 TTTGTGCCATCCTTGGCTTGTTGGCTCGCATGAATTAAAGATACCATCTGATATGATCAT 1199 Query 1200 TTACAAGCTCGTAAAAGTATACATAATGTCGTCTTCTTTGAGAAAATCGGCTTTAGCGGC 1259 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1200 TTACAAGCTTGTAAAAGTATACATAATGTCGTCGTCTTTGAGAAAATCGGCTTTAGCGGC 1259 Query 1260 TCTTGCCAAAACTTTAACAGTACCGCAGCTGACTTATTTGCAAGAGCAGTTTAATCTGTT 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 TCTTGCCAAAACTTTAACAGTACCGCAGCTGACTTATTTGCAAGAGCAGTTTAATCTGTT 1319 Query 1320 AGGACCAAGCAAAAACGGATATATCTCGATGCAGAATTATAAAACAGCAATCTTGAAGAG 1379 |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1320 AGGACCGAGCAAAAACGGATATATCTCGATGCAGAATTACAAAACAGCTATCTTGAAGAG 1379 Query 1380 CTCCACAGAAGCTACAAAGGATTCACGAGTCTTGGATTTTGTACACATGATTAGTTGTCT 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CTCCACAGAAGCTACAAAGGATTCACGAGTCTTGGATTTTGTACACATGATTAGTTGTCT 1439 Query 1440 TCAGTATAAGAAACTAGACTTTGAAGAGTTTTGCGCTTCAGCTTTAAGTGTATATCAGCT 1499 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1440 TCAGTACAAGAAACTAGACTTTGAAGAGTTTTGCGCTTCAGCTTTAAGTGTTTATCAGCT 1499 Query 1500 AGAAGCAATGGAGACTTGGGAGCAACATGCACGCCGTGCATATGAGTTGTATGAGAAGGA 1559 |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1500 AGAAGCAATGGAAACTTGGGAGCAACATGCACGCCATGCATATGAGTTGTTTGAGAAGGA 1559 Query 1560 TGGGAACAGAGTCATCATGATCGAAGAACTTGCCACGGAACTCGGACTAGGTCCATCGGT 1619 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1560 TGGGAACAGAGTCATTATGATCGAAGAACTTGCCACGGAACTCGGACTCGGTCCATCGGT 1619 Query 1620 GCCTGTTCATGTTGTTCTTCAAGATTGGATAAGACATTCTGATGGGAAGCTAAGTTTCTT 1679 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 GCCTGTTCAGGTTGTTCTTCAAGATTGGATAAGACATTCTGATGGGAAGCTAAGTTTCTT 1679 Query 1680 GGGTTTTGTCAGACTCTTACACGGCGTCTCCTCTCGTACATTGCagaaagcgtagaagag 1739 ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| | Sbjct 1680 GGGTTTTGTCAGACTCTTACACGGCGTGTCCTCTAGAACATTGCAGAAAGCGTAGAT-A- 1737 Query 1740 aattagattaaagatttgaaaaaagaaacaaaagagagcaaaatttgtgaacataattgt 1799 | ||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||| Sbjct 1738 A-TTAGATTAAAGATTTGAAAAA-GAAACAAAAGAGAGGAAA-TTTGTAAACATAATTGT 1794 Query 1800 tttgaaaaagatttgaaC 1817 |||||||||||||||||| Sbjct 1795 TTTGAAAAAGATTTGAAC 1812 > Ahg483182 jgi|Araly1|483182|fgenesh2_kg.4__2242__AT2G41140.1 Length=2019 Score = 1764 bits (955), Expect = 0.0 Identities = 1496/1756 (85%), Gaps = 42/1756 (2%) Strand=Plus/Plus Query 1 ATGGGGCTGTGTCATGGGAAACCTATCG-A-A-CAACAATCGAAGAA-TCTCCCAATCTC 56 |||||| | |||||||| ||||| |||| | | |||||||| || || |||||| | || Sbjct 6 ATGGGGATCTGTCATGGTAAACCCATCGAACAGCAACAATC-AAAAAGCCTCCCAGTTTC 64 Query 57 CAATGAAATC-GAAG-AGACACCTAAGAATT--CATCTCAGAAGGCGAAATCTTCAGGCT 112 | |||| | || | || | || | ||||| || | || |||||||||||| |||| Sbjct 65 CGGCGAAA-CAGATGAAG-CTCCGACGAATTCACAGC-CA-CCGGCGAAATCTTCCGGCT 120 Query 113 TTCCGTTTTATAGTCCAAGCCCTTTACCTAGTC-TCTTCAAAACCTCACCTGCTGTGTCA 171 |||||||||| || ||||| ||| ||||||| | | |||||| |||||||| | || | Sbjct 121 TTCCGTTTTACAGCCCAAGTCCTGTACCTAG-CTTATTCAAATCCTCACCT--TCCGT-A 176 Query 172 TCCTCCAGCGTGAGCTCCACGCCACTTCGTATCTTTAAGCGACCTTTCCCACCTCCATCA 231 || || ||||||||||| ||||| ||||||||||| ||| |||||||||| ||||| || Sbjct 177 TCTTCGAGCGTGAGCTCAACGCCTCTTCGTATCTTCAAGAGACCTTTCCCTCCTCCTTCT 236 Query 232 CCAGCTAAGCATATACGAGCTCTCCTCGCGCGTCGTC-ACGGTTCTGTTAAGCCCAATGA 290 || |||||||| ||||||||| ||||| ||||||| | |||| ||||| |||||||||| Sbjct 237 CCTGCTAAGCACATACGAGCTTTCCTCACGCGTCG-CTACGGCTCTGTCAAGCCCAATGC 295 Query 291 AGCTTCGA-TCCCTGAAGGTAGTGAATGTGAGGTTGGCT-TGGACAAGAAATTT-GGTTT 347 | ||||| |||| ||||| | || |||||| |||| | | || |||| ||| ||||| Sbjct 296 GGTTTCGATTCCC-GAAGGCAAAGAGTGTGAGATTGG-TCTCGATAAGAGTTTTGGGTTT 353 Query 348 CTCTAAGCAGTTTGCTTCACACTACGAGATTGACGGTGAGGTGGGTCGAGGGCATTTTGG 407 || || |||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 354 -TCGAAACAGTTTGCTTCACACTACGAGATTGATGGTGAGGTGGGTCGTGGACATTTTGG 412 Query 408 TTATACTTGCTCTGCTAAGGGGAAAAAAGGTAGCTTGAAAGGTCAAGATGTGGCTGTCAA 467 |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || Sbjct 413 GTATACTTGCTCTGCTAAGGGTAAAAAAGGTAGCTTGAAAGGTCAAGAAGTTGCTGTTAA 472 Query 468 AGTTATTCCCAAATCCAAGATGACTACGGCAATTGCAATTGAGGATGTTAGAAGAGAAGT 527 ||||||||| ||||| |||||||| || |||||||| |||||||||||||| |||||||| Sbjct 473 AGTTATTCCTAAATCAAAGATGACAACTGCAATTGCCATTGAGGATGTTAGTAGAGAAGT 532 Query 528 GAAGATATTGCGGGCTTTAACTGGTCACAAGAACCTAGTCCAGTTCTATGACGCCTTCGA 587 |||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| || || Sbjct 533 GAAGATGTTGCGGGCTTTGACTGGTCATAAGAACCTAGTCCAGTTTTATGACGCGTTTGA 592 Query 588 AGATGATGAAAATGTTTACATTGTCATGGAGTTATGCCAAGGCGGTGAACTCTTGGACAA 647 |||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||| Sbjct 593 AGATGATGAAAATGTTTATATTGTCATGGAATTATGCAAAGGTGGTGAACTCTTGGACAA 652 Query 648 AATACTTCAAAGGGGAGGCAAATACTCAGAAG-TAGATGCTAAAAAAGTAATGATTCAGA 706 ||||||||||||||| || ||||||||||||| | |||||||||||||| ||| |||||| Sbjct 653 AATACTTCAAAGGGGTGGAAAATACTCAGAAGAT-GATGCTAAAAAAGTTATGGTTCAGA 711 Query 707 TTCTTAGTGTAGTAGCCTACTGTCATCTTCAAGGCGTGGTTCACCGTGACCTCAAACCTG 766 |||| ||||| || || ||||||||||| ||||| || |||||||||||||| ||||| | Sbjct 712 TTCTCAGTGTTGTGGCTTACTGTCATCTACAAGGTGTTGTTCACCGTGACCTTAAACCCG 771 Query 767 AGAATTTTCTCTTCACCACAAAGGATGAGTCTTCCCCTTTGAAAGCCATTGATTTTGGTC 826 |||| ||||| ||| | || ||||||||| |||| ||| ||||||| ||||||||||||| Sbjct 772 AGAACTTTCTTTTCTCAACGAAGGATGAGACTTCTCCTCTGAAAGCAATTGATTTTGGTC 831 Query 827 TCTCCGACTATGTCAGGCCAGATGAGAGGTTGAATGACATTGTAGGAAGTGCTTATTACG 886 | || || ||||||| |||||| |||||||||||||| |||||||||||||| || |||| Sbjct 832 TTTCTGATTATGTCAAGCCAGACGAGAGGTTGAATGATATTGTAGGAAGTGCATACTACG 891 Query 887 TGGCCCCTGAAGTTTTACACCGTACATATGGAACTGAGGCAGATATGTGGAGTATTGGAG 946 ||||||| ||||||||||||||||||||||||||||| || || |||||||| || |||| Sbjct 892 TGGCCCCGGAAGTTTTACACCGTACATATGGAACTGAAGCTGACATGTGGAGCATAGGAG 951 Query 947 TGATTGCTTATATACTACTCTGTGGTAGCCGGCCCTTTTGGGCCCGTTCTGAATCTGGAA 1006 ||||||||||||| || |||||||| || || ||||| ||||||||| ||||||| |||| Sbjct 952 TGATTGCTTATATTCTTCTCTGTGGCAGTCGACCCTTCTGGGCCCGTACTGAATCCGGAA 1011 Query 1007 TCTTTAGAGCTGTTCTTAAAG-CAGAACCCAATTTCGAAGAAGCTCCTTGGCCATCTCTT 1065 | ||| ||||||| || |||| ||||||| ||||| |||||||||||||||||||| || Sbjct 1012 TTTTTCGAGCTGTCCT-AAAGGCAGAACCGAATTTTGAAGAAGCTCCTTGGCCATCCCTA 1070 Query 1066 TCACCTGACGCTGTAGATTTTGTGAAACGTTTG-TTAAATAAAGATTACCGTAAGA-GAC 1123 ||||||||||||||||||||||||||| | ||| |||| |||||||||||||| | ||| Sbjct 1071 TCACCTGACGCTGTAGATTTTGTGAAAAGATTGCTTAAC-AAAGATTACCGTAA-ACGAC 1128 Query 1124 TAACTGCTGCACAGGCTTTATGCCATCCGTGGCTGGTTGGCTCACATGAATTAAAGATAC 1183 ||||||| || |||||||| || ||||| |||||||||||||| |||||| ||| ||| | Sbjct 1129 TAACTGCGGCCCAGGCTTTGTGTCATCCCTGGCTGGTTGGCTCGCATGAACTAATGATTC 1188 Query 1184 CATCTGATATGATCATTTACAAGCTCGTAAAAGTATACATAATGTCGTCTTCTTTGAGAA 1243 |||||||||||||||| |||||||| |||||||| ||||||||||| |||| ||||||| Sbjct 1189 CATCTGATATGATCATATACAAGCTTGTAAAAGTGTACATAATGTCAACTTCATTGAGAA 1248 Query 1244 AATCGGCTTTAGCGGCTCTTGCCAAAACTTTAACAGTACCGCAGCT-GACTTATTTGCAA 1302 |||| |||||||||||||||||||| || ||||| ||||||||| | | ||||| |||| Sbjct 1249 AATCAGCTTTAGCGGCTCTTGCCAAGACATTAACTGTACCGCAGTTAG-CTTATCTGCAG 1307 Query 1303 GAGCAGTTTA-ATCTGTTAGGACCAAGCAAAAACGGATATATCTCGATGCAGAATTATAA 1361 ||||| || | || |||| || ||||||||||| ||||||||||| ||||| || || || Sbjct 1308 GAGCAATTCACAT-TGTTGGGGCCAAGCAAAAATGGATATATCTCTATGCAAAACTACAA 1366 Query 1362 AACAGCAATCTTGAAGAGCTCCACAGAAGCTACAAAGGATTCACGAGTCTTGGATTTTGT 1421 |||||||||| | ||||| || ||||| |||| |||||||||||||| || |||||||| Sbjct 1367 AACAGCAATCCTAAAGAGTTCAACAGATGCTATGAAGGATTCACGAGTGTTAGATTTTGT 1426 Query 1422 ACACATGATTAGTTGTCTTCAGTATAAGAAACTAGACTTTGAAGAGTTTTGCGCTTCAGC 1481 |||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||| Sbjct 1427 TCACATGATAAGTTGTCTTCAATACAAGAAACTAGATTTTGAAGAGTTTTGTGCTTCAGC 1486 Query 1482 TTTAAGTGTATATCAGCTAGAAGCAATGGAGACTTGGGAGCAACATGCACGCCGTGCATA 1541 ||||| || |||||||| ||||||||||| || ||||||||||||||||| ||||| || Sbjct 1487 ATTAAGCGTTTATCAGCTCGAAGCAATGGAAACATGGGAGCAACATGCACGGCGTGCTTA 1546 Query 1542 TGAGTTGTATGAGAAGGATGGGAACAGAGTCATCATGATCGAAGAACTTGCCA-CGGAAC 1600 ||||||| |||||| || ||||| ||| ||||||||| ||||||||||| | |||||| Sbjct 1547 CGAGTTGTTTGAGAAAGACGGGAATAGACCCATCATGATTGAAGAACTTGC-ATCGGAAC 1605 Query 1601 TCGGACTAGGTCCATCGGTGCCTGTTCATGTTGTTCTTCAAGATTGGATAAGACATTCTG 1660 ||||||| || ||||| ||||| || || |||||||| || ||||||||||||||||||| Sbjct 1606 TCGGACTCGGGCCATCAGTGCCGGTGCACGTTGTTCTCCAGGATTGGATAAGACATTCTG 1665 Query 1661 ATGGGAAGCTAAGTTTCTTGGGTTTTGTCAGACT-CTTACACGGCGTCTCCTCTCGTACA 1719 |||| ||||| |||||||| || ||||||||| | || ||| ||||| || || || || Sbjct 1666 ATGGCAAGCTTAGTTTCTTAGGCTTTGTCAGATTACT-ACATGGCGTGTCTTCCCGGACC 1724 Query 1720 TTGCagaaagcgtaga 1735 || || ||||| |||| Sbjct 1725 TTACAAAAAGCTTAGA 1740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68981433695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5