BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56770.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486116 jgi|Araly1|486116|fgenesh2_kg.5__2108__AT3G56770.1 965 0.0
> Ahg486116 jgi|Araly1|486116|fgenesh2_kg.5__2108__AT3G56770.1
Length=699
Score = 965 bits (522), Expect = 0.0
Identities = 647/705 (92%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 1 ATGC-AGCCAGAGGTTTCAGATCAAATATTTTATGCCTTCCTCACCGGAGGATTATGTGC 59
|||| || ||||| |||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 1 ATGCAAG-CAGAGATTTCAGATCAAATATTCTATTCATTCCTCACCGGAGGATTATGTTC 59
Query 60 CTCGTCTACTTCCACCACCGTGACGTCGTCGTCTGACC-CTTTTG-C--C----AC--GG 109
|||||| |||||| ||||| ||||||| || | || |||||| | | || ||
Sbjct 60 CTCGTCGACTTCCTCCACCACAACGTCGTTGT-TTTCCTCTTTTGCCATCGAAGACAAGG 118
Query 110 TTTATGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAGGCTGAGCGAAAGAGAA 169
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 TTGCTGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAAGCTGAGCGAAAGAGAA 178
Query 170 GAGCAAGAATCAATTCCCATCTCAACAAGCTCCGCAAGTTACTCTCTTGTAACTCCAAGA 229
||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 GAGAAAAAATCAATTTCCATCTCAACAAGCTCCGCAACTTACTCTCTTGTAACTCCAAGA 238
Query 230 CAGACAAATCCACACTACTAGCAAAAGTGGTTCAACGAGTCAAAGAACTAAAACAACAAA 289
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 239 CAGACAAAGCCACACTACTAGCTAAAGTGGTTCAACGAGTCAAAGAATTAAAACAACAAA 298
Query 290 CCCTAGAAATCACCGACGAAACAATACCGTCGGAGACTGACGAAATCAGTGTACTCAACA 349
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 299 CCCTAGAAATCACCGACGAAACATTACCGTCGGAGACAGACGAAATCAGTGTACTCAACT 358
Query 350 TTGAGGACTGTTCCAGA-GGCGACGATCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 408
|||| |||||||||| | | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TTGAAGACTGTTCCA-ATGACGACGGTCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 417
Query 409 GAGGACCGGCCAGAGCTCTTGAAAGATCTCATGGAGACACTCAAATCTCTTCAGATGGAA 468
|||||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 418 GAGGACAGGCCAGATCTCTTGCAAGATCTCATGGAGACACTCAAATATCTTCAGATGGAA 477
Query 469 ACTCTCTTTGCCGACATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 528
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTCTCTTTGCCGAAATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 537
Query 529 GCTGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 588
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCCGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 597
Query 589 TTACTCGAACGGTCAAGCAAGTCGGTGATGGTGGGACATGGTGGTGGTGGTGGGGAAGAA 648
|| || |||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 598 TTGCTTGAACGGTCAAGCAAGTCGGTGATGATGGGACATGGTGGTGGTGG-GG--AAGAA 654
Query 649 AGGTTAAAACGACGTCGTGCGCTGGATCACATCATAATGGTCTGA 693
|||||||||||||||||||| || |||||||||||||||||||||
Sbjct 655 AGGTTAAAACGACGTCGTGCTCTAGATCACATCATAATGGTCTGA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5