BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56770.1 Length=693 Score E Sequences producing significant alignments: (Bits) Value Ahg486116 jgi|Araly1|486116|fgenesh2_kg.5__2108__AT3G56770.1 965 0.0 > Ahg486116 jgi|Araly1|486116|fgenesh2_kg.5__2108__AT3G56770.1 Length=699 Score = 965 bits (522), Expect = 0.0 Identities = 647/705 (92%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 1 ATGC-AGCCAGAGGTTTCAGATCAAATATTTTATGCCTTCCTCACCGGAGGATTATGTGC 59 |||| || ||||| |||||||||||||||| ||| | ||||||||||||||||||||| | Sbjct 1 ATGCAAG-CAGAGATTTCAGATCAAATATTCTATTCATTCCTCACCGGAGGATTATGTTC 59 Query 60 CTCGTCTACTTCCACCACCGTGACGTCGTCGTCTGACC-CTTTTG-C--C----AC--GG 109 |||||| |||||| ||||| ||||||| || | || |||||| | | || || Sbjct 60 CTCGTCGACTTCCTCCACCACAACGTCGTTGT-TTTCCTCTTTTGCCATCGAAGACAAGG 118 Query 110 TTTATGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAGGCTGAGCGAAAGAGAA 169 || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 119 TTGCTGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAAGCTGAGCGAAAGAGAA 178 Query 170 GAGCAAGAATCAATTCCCATCTCAACAAGCTCCGCAAGTTACTCTCTTGTAACTCCAAGA 229 ||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 179 GAGAAAAAATCAATTTCCATCTCAACAAGCTCCGCAACTTACTCTCTTGTAACTCCAAGA 238 Query 230 CAGACAAATCCACACTACTAGCAAAAGTGGTTCAACGAGTCAAAGAACTAAAACAACAAA 289 |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 239 CAGACAAAGCCACACTACTAGCTAAAGTGGTTCAACGAGTCAAAGAATTAAAACAACAAA 298 Query 290 CCCTAGAAATCACCGACGAAACAATACCGTCGGAGACTGACGAAATCAGTGTACTCAACA 349 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 299 CCCTAGAAATCACCGACGAAACATTACCGTCGGAGACAGACGAAATCAGTGTACTCAACT 358 Query 350 TTGAGGACTGTTCCAGA-GGCGACGATCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 408 |||| |||||||||| | | ||||| |||||||||||||||||||||||||||||||||| Sbjct 359 TTGAAGACTGTTCCA-ATGACGACGGTCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 417 Query 409 GAGGACCGGCCAGAGCTCTTGAAAGATCTCATGGAGACACTCAAATCTCTTCAGATGGAA 468 |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 418 GAGGACAGGCCAGATCTCTTGCAAGATCTCATGGAGACACTCAAATATCTTCAGATGGAA 477 Query 469 ACTCTCTTTGCCGACATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 528 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ACTCTCTTTGCCGAAATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 537 Query 529 GCTGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 588 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GCCGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 597 Query 589 TTACTCGAACGGTCAAGCAAGTCGGTGATGGTGGGACATGGTGGTGGTGGTGGGGAAGAA 648 || || |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 598 TTGCTTGAACGGTCAAGCAAGTCGGTGATGATGGGACATGGTGGTGGTGG-GG--AAGAA 654 Query 649 AGGTTAAAACGACGTCGTGCGCTGGATCACATCATAATGGTCTGA 693 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 655 AGGTTAAAACGACGTCGTGCTCTAGATCACATCATAATGGTCTGA 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25466108556 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5