BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56780.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486117 jgi|Araly1|486117|fgenesh2_kg.5__2109__AT3G56780.1 1858 0.0
Ahg916396 jgi|Araly1|916396|Al_scaffold_0008_1147 610 8e-174
> Ahg486117 jgi|Araly1|486117|fgenesh2_kg.5__2109__AT3G56780.1
Length=1287
Score = 1858 bits (1006), Expect = 0.0
Identities = 1208/1303 (93%), Gaps = 23/1303 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTGCCCGACGATTTGATCTTGAAGATT 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTACCCGACGATTTGATCTTGAAGATA 60
Query 61 TTGTCATTCGTTTCTACTAAACATGTTGTAGTGACAAGTCTTTTGTCaaaaaaaTGGAAA 120
||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTGTCATTCCTTTCTACAAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAGAATGGAAA 120
Query 121 TCTCTTTGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGA---TTT 177
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCTCTATGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGATTCTTT 180
Query 178 GAACGATTTCTCGACAAGTCTCTGTTCTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 237
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAACGATTTCTCGACAAGTCACTGTTGTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 240
Query 238 GTCGAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGAACCGCGCTT 297
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTCAAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGTACCGCGCTT 300
Query 298 CATCATCATCATTGCCACCTCCGTGAGCTAGAGATAGATGCTTGTATTGTCCATACCGTA 357
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 301 CGTCATCATCATTGCCACCTCCGTGAGCTCGAGATAGATGCTTGTATTGTCCATACCTTA 360
Query 358 TTACCTCCTGAATTGTTTACCTGCAAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TTACCTCCTGAATTGTTTACCTGCGAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 420
Query 418 ATCGATGTGGAAGCTCCTCTTACAACGGTCTCTCTCCCATCCCTAAAAACTCTGCACATT 477
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 421 ATTGATGTGGAAGCTCCTCTGACAACGGTCTGTCTCCCATCCCTAAAAACTCTGCACATT 480
Query 478 GACCACTCGAGTTTATTCGACTTTG-GATCCCTTCAAATGCTTTTATCCAATTGCAATTT 536
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 481 GACCACTCGAGTTTATTCGACTTTGAG-TCCCTTCAAATGCTTTTATCCAGTTGCAATTT 539
Query 537 TATTACTGACCTAATGGTCATAAGAGAATCTCGTTTCTTTTTTGCTGAGTACGACGTTTC 596
| |||| ||||||||||||| ||| |||||| | |||||||||||||||| |||||||||
Sbjct 540 TCTTACAGACCTAATGGTCACAAGGGAATCTAGATTCTTTTTTGCTGAGTTCGACGTTTC 599
Query 597 TTGGTGTAAAACACTTATGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTC 656
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGTGTAAAACACTTGTGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTA 659
Query 657 TTCTTCTTCCGCGGTATGTCTCCCACTCCTCAAAACTCTCCATGTTGCCCGCATGGAGGA 716
|||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 660 TTCTTC--C-GCGGTATGTCTCCCATTCCTCAAAACTCTGCATGTTGCCCGCATGGTGGA 716
Query 717 CTTTAACAATGATTCCTTTTGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAAC 776
||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| |
Sbjct 717 CTTTAGCAATGATTCCTTTTGTCGGCTTTTATCCAAATGCCCTGTTCTTTCTGACCTAGC 776
Query 777 ACTGGAAGAAAAAACCAGTGATGTTTTGTTGAATTTGGATATCGACATGCCTTACTTACA 836
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 ATTGGAAGAAAAAACCAGTGATGTTTTGCTGAATTTGGATATCGACATGCCTTACTTACA 836
Query 837 AAGATTGTCGATTATCACAAGAGTCGATGCAGATTCCAAGCATATTTT-TAGTTTGA-TG 894
||||||||||||||| || | |||||||| | | |||||||| || | |||||| | ||
Sbjct 837 AAGATTGTCGATTATAACGATAGTCGATG-A--TCCCAAGCAT-TTGTGTAGTTT-ACTG 891
Query 895 AAAAACTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAA 954
| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 892 ACAAATTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTTCTTCAACATTCAA 951
Query 955 GAGTTGGCATATGCAAGCCGTTACCGGTATATTGT-ACGGGTTAGGCTCGGAGTTCCATC 1013
||||||| ||||| || | ||| ||||||||| | | ||||| |||||||||||| |
Sbjct 952 GAGTTGGTGTATGCCGGC--T-ACCAGTATATTGTGA-GAGTTAGACTCGGAGTTCCAAC 1007
Query 1014 AAAATTAGAGGATGCAAGTACCTTCAGTCGAATCGTGCATCTGGAGCTGAGCATATGTAG 1073
| | ||||||||||| || |||| ||||||| || |||||||||||||||||||||||
Sbjct 1008 AC--T-AGAGGATGCAAATATCTTCCGTCGAATAGTACATCTGGAGCTGAGCATATGTAG 1064
Query 1074 TGAAAGATCTGTGGAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCT 1133
|||||||| || || ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1065 TGAAAGATATGGGGGAATGCTTGTAGATTTGCTCCTATGTTTCATTAAATTGGTGGTTCT 1124
Query 1134 CAAGCTTGAACATGTTTACTTACTAACCCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1193
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1125 CAAGCTTGAAAATGTTTACTTACTAACTCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1184
Query 1194 TCCCGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGGTACACAGGGAGATA 1253
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1185 TCCTGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGTTACACAGGGAGATA 1244
Query 1254 CGGAGATAAGGATCTGCGAAGCAACAGATTGAAGAGGACTTAG 1296
||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 1245 CGGAGATAAGGATGTGGGAAGCAACAAATTGAAGAGGACTTAG 1287
> Ahg916396 jgi|Araly1|916396|Al_scaffold_0008_1147
Length=882
Score = 610 bits (330), Expect = 8e-174
Identities = 724/904 (80%), Gaps = 67/904 (7%)
Strand=Plus/Plus
Query 271 ATTGGACCATGGATTAGAACCGCG-C-TTCATCATCATCATTGCCACCTCCGTGAGCTAG 328
||||||||||||||||| | | | | ||||| ||||||||||| |||| ||||||||
Sbjct 10 ATTGGACCATGGATTAGTA--GAGTCTTTCATTATCATCATTGCTACCTTCGTGAGCTCC 67
Query 329 AGATAGATGCTTGTATTGTC-CATACCGTATTACCTCCTGAATTGTTTACCTGCAAAACA 387
||||||||||| || || | ||||| | |||||| |||||||||||| ||||| |||
Sbjct 68 AGATAGATGCTGGTGCTG-CATATACCCCAATACCTCATGAATTGTTTACTTGCAAGACA 126
Query 388 CTTGTTGTCTTGAAACTCAAAGGTATAGT-GATCGATGTGGAAGCTCCTCTTACAACGGT 446
|||||||||||||||||| ||||| | | ||| | ||||||| | |||||||| ||
Sbjct 127 CTTGTTGTCTTGAAACTCCAAGGT-GAATCGATAAAAGTGGAAG--GC-CTTACAACAGT 182
Query 447 CTCTCTCCCATCCCTAAAAACTCTGCACATTGACCACTCGAGTT-TATTCGAC-TTTGGA 504
|| |||||||||| ||||||||||||||| |||||| |||| || ||||| | | || |
Sbjct 183 CTGTCTCCCATCCTTAAAAACTCTGCACACTGACCATTCGA-TTATATTC-TCGTCTGTA 240
Query 505 TCCCTTCAAA-TGCTTTTATCCAATTGCAATTTTATTACTGACC-TAATGGTCATAAGAG 562
||||| ||| ||||| ||||||||||||||||| ||||||||| ||| | ||||| | |
Sbjct 241 CCCCTT-AAATTGCTTCTATCCAATTGCAATTTTCTTACTGACCTTAA-GATCATATG-G 297
Query 563 A-ATC--TCGTTTCTTTTTTGCTGAGTACGACGTTTCTTGGTGTAAAACA-CTTATGGCC 618
| ||| || | ||| || | |||| ||| ||||||||||| |||| | ||| |||||
Sbjct 298 ATATCAGGAGTGTGTTTATT-C-GAGTTCGATGTTTCTTGGTGCAAAA-AGCTTGTGGCC 354
Query 619 TTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATT-TCTTCTTCTTCCGCGGTATGTCT 677
|||||||||||||| |||| ||||||||| || || ||||||||||||||||| |||||
Sbjct 355 TTGAAACTCGAAGGTTTGATGGATGTGATCAG-TTTATCTTCTTCTTCCGCGGTCTGTCT 413
Query 678 CCCACTCCTCAAAACTCTCCATGTTGCCCGCA--TGGAGGACTTTAACAATGATTCCTTT 735
||| ||||||| ||||| |||||| | | || |||| | || |||||||||| |||
Sbjct 414 CCCGTTCCTCAATACTCTGCATGTTACTCACATTTGGA--AGTTGAACAATGATTTCTTC 471
Query 736 TGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAACACTGGAAGAAAAAACCAGT 795
||||| ||||||||||| || ||| |||| |||||||||||| ||||||||||||||||
Sbjct 472 TGTCGACTTTTATCCAACTGTCCTCTTCTTTCCGACCTAACATTGGAAGAAAAAACCAGC 531
Query 796 GATGTTTTG-TTGAATTTGGATATCGACATGCCTTA-CTTACAAAGATTGTCGATTATCA 853
||||| || | | ||||| | |||| | |||| || |||||||||||||||||||||||
Sbjct 532 AATGTTATGCTCG-ATTTGAACATCGTCTTGCC-TAGCTTACAAAGATTGTCGATTATCA 589
Query 854 CAAGAGTCGATGCAGATTCCAAGCATATTT-T-TAGTTTGA-T-GAAAAACTACACTCGA 909
||| | || || || ||||| || | || | |||||| | | ||||| | || | ||
Sbjct 590 CAAAATTCAAT--AG-TTCCA--CACACTTGTGTAGTTT-ACTTGAAAAT-TGCATTGGA 642
Query 910 AAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAAGAGTTGGCATAT-GC 968
||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
Sbjct 643 AAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCACCATTCAAGAG--GACATGTCGT 700
Query 969 AAGCCG-TT--A--CCGGTAT-AT-TGTACGGGTTAGGCTCGGAGTTCCATCAAAATTAG 1021
| | || | || | | || || | ||||||| ||||||| |||||||||| |||
Sbjct 701 T-GTCTATTTTAATCCCCTTTTATGTG-A-GGGTTAGACTCGGAGATCCATCAAAACTAG 757
Query 1022 AGGATGCAAGTACCTTC-AGTCGAATCGTGCATCTGGAGCTGAGCATATGT-AGTGAAAG 1079
| || ||||| |||| | |||||| || |||||||||| |||||||||| | |||||
Sbjct 758 AATATACAAGTGTCTTCGA-TCGAATTGTACATCTGGAGCAGAGCATATGTGA-TGAAAT 815
Query 1080 ATCTGTG-GAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCTCAAGC 1138
|||| | ||| ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 816 ATCTCAGAGAAC-GCTTGTAGATTTGCTCCAACGTTTCACTAAATTGGTGGTTCTCAAGC 874
Query 1139 TTGA 1142
||||
Sbjct 875 TTGA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5