BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56780.1 Length=1296 Score E Sequences producing significant alignments: (Bits) Value Ahg486117 jgi|Araly1|486117|fgenesh2_kg.5__2109__AT3G56780.1 1858 0.0 Ahg916396 jgi|Araly1|916396|Al_scaffold_0008_1147 610 8e-174 > Ahg486117 jgi|Araly1|486117|fgenesh2_kg.5__2109__AT3G56780.1 Length=1287 Score = 1858 bits (1006), Expect = 0.0 Identities = 1208/1303 (93%), Gaps = 23/1303 (2%) Strand=Plus/Plus Query 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTGCCCGACGATTTGATCTTGAAGATT 60 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTACCCGACGATTTGATCTTGAAGATA 60 Query 61 TTGTCATTCGTTTCTACTAAACATGTTGTAGTGACAAGTCTTTTGTCaaaaaaaTGGAAA 120 ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TTGTCATTCCTTTCTACAAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAGAATGGAAA 120 Query 121 TCTCTTTGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGA---TTT 177 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TCTCTATGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGATTCTTT 180 Query 178 GAACGATTTCTCGACAAGTCTCTGTTCTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 237 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GAACGATTTCTCGACAAGTCACTGTTGTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 240 Query 238 GTCGAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGAACCGCGCTT 297 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GTCAAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGTACCGCGCTT 300 Query 298 CATCATCATCATTGCCACCTCCGTGAGCTAGAGATAGATGCTTGTATTGTCCATACCGTA 357 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 301 CGTCATCATCATTGCCACCTCCGTGAGCTCGAGATAGATGCTTGTATTGTCCATACCTTA 360 Query 358 TTACCTCCTGAATTGTTTACCTGCAAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 417 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 361 TTACCTCCTGAATTGTTTACCTGCGAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 420 Query 418 ATCGATGTGGAAGCTCCTCTTACAACGGTCTCTCTCCCATCCCTAAAAACTCTGCACATT 477 || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 421 ATTGATGTGGAAGCTCCTCTGACAACGGTCTGTCTCCCATCCCTAAAAACTCTGCACATT 480 Query 478 GACCACTCGAGTTTATTCGACTTTG-GATCCCTTCAAATGCTTTTATCCAATTGCAATTT 536 ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 481 GACCACTCGAGTTTATTCGACTTTGAG-TCCCTTCAAATGCTTTTATCCAGTTGCAATTT 539 Query 537 TATTACTGACCTAATGGTCATAAGAGAATCTCGTTTCTTTTTTGCTGAGTACGACGTTTC 596 | |||| ||||||||||||| ||| |||||| | |||||||||||||||| ||||||||| Sbjct 540 TCTTACAGACCTAATGGTCACAAGGGAATCTAGATTCTTTTTTGCTGAGTTCGACGTTTC 599 Query 597 TTGGTGTAAAACACTTATGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTC 656 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTGGTGTAAAACACTTGTGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTA 659 Query 657 TTCTTCTTCCGCGGTATGTCTCCCACTCCTCAAAACTCTCCATGTTGCCCGCATGGAGGA 716 |||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| ||| Sbjct 660 TTCTTC--C-GCGGTATGTCTCCCATTCCTCAAAACTCTGCATGTTGCCCGCATGGTGGA 716 Query 717 CTTTAACAATGATTCCTTTTGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAAC 776 ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| | Sbjct 717 CTTTAGCAATGATTCCTTTTGTCGGCTTTTATCCAAATGCCCTGTTCTTTCTGACCTAGC 776 Query 777 ACTGGAAGAAAAAACCAGTGATGTTTTGTTGAATTTGGATATCGACATGCCTTACTTACA 836 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 777 ATTGGAAGAAAAAACCAGTGATGTTTTGCTGAATTTGGATATCGACATGCCTTACTTACA 836 Query 837 AAGATTGTCGATTATCACAAGAGTCGATGCAGATTCCAAGCATATTTT-TAGTTTGA-TG 894 ||||||||||||||| || | |||||||| | | |||||||| || | |||||| | || Sbjct 837 AAGATTGTCGATTATAACGATAGTCGATG-A--TCCCAAGCAT-TTGTGTAGTTT-ACTG 891 Query 895 AAAAACTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAA 954 | ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 892 ACAAATTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTTCTTCAACATTCAA 951 Query 955 GAGTTGGCATATGCAAGCCGTTACCGGTATATTGT-ACGGGTTAGGCTCGGAGTTCCATC 1013 ||||||| ||||| || | ||| ||||||||| | | ||||| |||||||||||| | Sbjct 952 GAGTTGGTGTATGCCGGC--T-ACCAGTATATTGTGA-GAGTTAGACTCGGAGTTCCAAC 1007 Query 1014 AAAATTAGAGGATGCAAGTACCTTCAGTCGAATCGTGCATCTGGAGCTGAGCATATGTAG 1073 | | ||||||||||| || |||| ||||||| || ||||||||||||||||||||||| Sbjct 1008 AC--T-AGAGGATGCAAATATCTTCCGTCGAATAGTACATCTGGAGCTGAGCATATGTAG 1064 Query 1074 TGAAAGATCTGTGGAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCT 1133 |||||||| || || ||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1065 TGAAAGATATGGGGGAATGCTTGTAGATTTGCTCCTATGTTTCATTAAATTGGTGGTTCT 1124 Query 1134 CAAGCTTGAACATGTTTACTTACTAACCCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1193 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1125 CAAGCTTGAAAATGTTTACTTACTAACTCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1184 Query 1194 TCCCGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGGTACACAGGGAGATA 1253 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1185 TCCTGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGTTACACAGGGAGATA 1244 Query 1254 CGGAGATAAGGATCTGCGAAGCAACAGATTGAAGAGGACTTAG 1296 ||||||||||||| || ||||||||| |||||||||||||||| Sbjct 1245 CGGAGATAAGGATGTGGGAAGCAACAAATTGAAGAGGACTTAG 1287 > Ahg916396 jgi|Araly1|916396|Al_scaffold_0008_1147 Length=882 Score = 610 bits (330), Expect = 8e-174 Identities = 724/904 (80%), Gaps = 67/904 (7%) Strand=Plus/Plus Query 271 ATTGGACCATGGATTAGAACCGCG-C-TTCATCATCATCATTGCCACCTCCGTGAGCTAG 328 ||||||||||||||||| | | | | ||||| ||||||||||| |||| |||||||| Sbjct 10 ATTGGACCATGGATTAGTA--GAGTCTTTCATTATCATCATTGCTACCTTCGTGAGCTCC 67 Query 329 AGATAGATGCTTGTATTGTC-CATACCGTATTACCTCCTGAATTGTTTACCTGCAAAACA 387 ||||||||||| || || | ||||| | |||||| |||||||||||| ||||| ||| Sbjct 68 AGATAGATGCTGGTGCTG-CATATACCCCAATACCTCATGAATTGTTTACTTGCAAGACA 126 Query 388 CTTGTTGTCTTGAAACTCAAAGGTATAGT-GATCGATGTGGAAGCTCCTCTTACAACGGT 446 |||||||||||||||||| ||||| | | ||| | ||||||| | |||||||| || Sbjct 127 CTTGTTGTCTTGAAACTCCAAGGT-GAATCGATAAAAGTGGAAG--GC-CTTACAACAGT 182 Query 447 CTCTCTCCCATCCCTAAAAACTCTGCACATTGACCACTCGAGTT-TATTCGAC-TTTGGA 504 || |||||||||| ||||||||||||||| |||||| |||| || ||||| | | || | Sbjct 183 CTGTCTCCCATCCTTAAAAACTCTGCACACTGACCATTCGA-TTATATTC-TCGTCTGTA 240 Query 505 TCCCTTCAAA-TGCTTTTATCCAATTGCAATTTTATTACTGACC-TAATGGTCATAAGAG 562 ||||| ||| ||||| ||||||||||||||||| ||||||||| ||| | ||||| | | Sbjct 241 CCCCTT-AAATTGCTTCTATCCAATTGCAATTTTCTTACTGACCTTAA-GATCATATG-G 297 Query 563 A-ATC--TCGTTTCTTTTTTGCTGAGTACGACGTTTCTTGGTGTAAAACA-CTTATGGCC 618 | ||| || | ||| || | |||| ||| ||||||||||| |||| | ||| ||||| Sbjct 298 ATATCAGGAGTGTGTTTATT-C-GAGTTCGATGTTTCTTGGTGCAAAA-AGCTTGTGGCC 354 Query 619 TTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATT-TCTTCTTCTTCCGCGGTATGTCT 677 |||||||||||||| |||| ||||||||| || || ||||||||||||||||| ||||| Sbjct 355 TTGAAACTCGAAGGTTTGATGGATGTGATCAG-TTTATCTTCTTCTTCCGCGGTCTGTCT 413 Query 678 CCCACTCCTCAAAACTCTCCATGTTGCCCGCA--TGGAGGACTTTAACAATGATTCCTTT 735 ||| ||||||| ||||| |||||| | | || |||| | || |||||||||| ||| Sbjct 414 CCCGTTCCTCAATACTCTGCATGTTACTCACATTTGGA--AGTTGAACAATGATTTCTTC 471 Query 736 TGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAACACTGGAAGAAAAAACCAGT 795 ||||| ||||||||||| || ||| |||| |||||||||||| |||||||||||||||| Sbjct 472 TGTCGACTTTTATCCAACTGTCCTCTTCTTTCCGACCTAACATTGGAAGAAAAAACCAGC 531 Query 796 GATGTTTTG-TTGAATTTGGATATCGACATGCCTTA-CTTACAAAGATTGTCGATTATCA 853 ||||| || | | ||||| | |||| | |||| || ||||||||||||||||||||||| Sbjct 532 AATGTTATGCTCG-ATTTGAACATCGTCTTGCC-TAGCTTACAAAGATTGTCGATTATCA 589 Query 854 CAAGAGTCGATGCAGATTCCAAGCATATTT-T-TAGTTTGA-T-GAAAAACTACACTCGA 909 ||| | || || || ||||| || | || | |||||| | | ||||| | || | || Sbjct 590 CAAAATTCAAT--AG-TTCCA--CACACTTGTGTAGTTT-ACTTGAAAAT-TGCATTGGA 642 Query 910 AAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAAGAGTTGGCATAT-GC 968 ||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | | Sbjct 643 AAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCACCATTCAAGAG--GACATGTCGT 700 Query 969 AAGCCG-TT--A--CCGGTAT-AT-TGTACGGGTTAGGCTCGGAGTTCCATCAAAATTAG 1021 | | || | || | | || || | ||||||| ||||||| |||||||||| ||| Sbjct 701 T-GTCTATTTTAATCCCCTTTTATGTG-A-GGGTTAGACTCGGAGATCCATCAAAACTAG 757 Query 1022 AGGATGCAAGTACCTTC-AGTCGAATCGTGCATCTGGAGCTGAGCATATGT-AGTGAAAG 1079 | || ||||| |||| | |||||| || |||||||||| |||||||||| | ||||| Sbjct 758 AATATACAAGTGTCTTCGA-TCGAATTGTACATCTGGAGCAGAGCATATGTGA-TGAAAT 815 Query 1080 ATCTGTG-GAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCTCAAGC 1138 |||| | ||| ||||||||||||||||| | ||||||||||||||||||| ||||||| Sbjct 816 ATCTCAGAGAAC-GCTTGTAGATTTGCTCCAACGTTTCACTAAATTGGTGGTTCTCAAGC 874 Query 1139 TTGA 1142 |||| Sbjct 875 TTGA 878 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48454227507 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5