BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56800.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938640 jgi|Araly1|938640|scaffold_502831.1 965 0.0
Ahg934930 jgi|Araly1|934930|scaffold_402918.1 597 5e-170
Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3 470 1e-131
> Ahg938640 jgi|Araly1|938640|scaffold_502831.1
Length=575
Score = 965 bits (522), Expect = 0.0
Identities = 561/579 (97%), Gaps = 5/579 (1%)
Strand=Plus/Plus
Query 137 GAAAAGGAGAAGaaaaaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAAGGAGAAGAAAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 60
Query 197 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCT- 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTT 120
Query 256 GGGTACTGTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGAT 315
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGG-ACTGTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGAT 179
Query 316 CAACGAAGTGGATGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTTAT 375
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CAATGAAGTGGACGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTCAT 239
Query 376 GGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTT 299
Query 436 CGACAAGGACCAGAACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCT 495
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 300 TGACAAGGACCAGAACGGTTTCATTTCAGCCGCTGAGCTTCGTCATGTGATGACAAACCT 359
Query 496 TGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGG 419
Query 556 TGATGGTCAGATTAACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGATGCTGTTT 615
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 TGATGGTCAGATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGATGCGGTTT 479
Query 616 TAGAACCAAACAATGGCTCTATAAACTTGGTTTGCATCTCTTACATATAAATTCTTATGT 675
| || |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 480 TGGA-CCAAACAATGGCTCTA-AA-CTTGGTTTGCATCTCTTACATATAAATTCTTATGT 536
Query 676 TATGTTCTATAATTTTTATTCATGGGACTCGAGGTATGT 714
|||||||||||||||||||||||||||||| |||| |||
Sbjct 537 TATGTTCTATAATTTTTATTCATGGGACTCAAGGTCTGT 575
> Ahg934930 jgi|Araly1|934930|scaffold_402918.1
Length=490
Score = 597 bits (323), Expect = 5e-170
Identities = 414/459 (90%), Gaps = 2/459 (0%)
Strand=Plus/Plus
Query 150 aaaaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCA 209
||||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 13 AAAAAGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCTTTCA 72
Query 210 GCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTGGGTACTGTGATGC 269
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 73 GCTTATTCGACAAGGATGGTGATGGTTGCATCACCACAAAGGAGCTCGGTACCGTGATGC 132
Query 270 GTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGATCAACGAAGTGGATG 329
||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 133 GTTCCCTCGGTCAAAACCCGACCGAAGCTGAGCTTCAGGACATGATCAACGAAGTGGATG 192
Query 330 CTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTTATGGCTCGTAAGATGA 389
| ||||||||||| |||||||||||||| |||||||||||||| |||||| | || ||||
Sbjct 193 CGGATGGTAACGGAACCATTGATTTCCCTGAGTTCTTGAACCTAATGGCTAGGAAAATGA 252
Query 390 AGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGT-TTTCGACAAGGACCAG 448
||||||| |||||||||||||| ||||||||||| ||| | || ||| ||||| || |||
Sbjct 253 AGGACACTGACTCTGAGGAAGAACTCAAGGAAGCTTTCAGAGTCTTT-GACAAAGATCAG 311
Query 449 AACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCTTGGTGAGAAGCTT 508
||||||||||||||||| ||||| | | ||||||||||| ||||| || ||||||||
Sbjct 312 AACGGTTTCATCTCAGCTGCTGAATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTA 371
Query 509 ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAGATT 568
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 372 ACTGATGAAGAAGTTGATGAGATGATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATC 431
Query 569 AACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGA 607
||||||||||||||||| ||||| |||||||| ||||||
Sbjct 432 AACTACGAAGAGTTTGTCAAGGTTATGATGGCCAAGTGA 470
> Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3
Length=714
Score = 470 bits (254), Expect = 1e-131
Identities = 391/457 (86%), Gaps = 9/457 (2%)
Strand=Plus/Plus
Query 152 aaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCAGC 211
|||| |||||| |||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 61 AAAA-AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTTTAGC 119
Query 212 TTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTGGGTACTGTGATGCGT 271
|||||||||| || || ||||||||||| || || || ||||| || || |||||| |
Sbjct 120 CTATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAGAGCTAGGAACAGTGATGAGA 179
Query 272 TCCCTT-GGACAAAACCCAACCGAAGCAGAGCTT-CAAGACATGATCAACGAAGTGGATG 329
| | || || ||||| ||||| ||||||||| || ||||| ||||| |||||||| ||||
Sbjct 180 T-CATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGATG 237
Query 330 CTGATGGTAACGGTACCATTGATTTCCCAGAG-TTCTTGAACCTTATGGCTCGTAAGATG 388
||||||||||||| ||||| || ||||| ||| ||| | |||||||||||||| ||||||
Sbjct 238 CTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TCAACCTTATGGCTCGGAAGATG 296
Query 389 AAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTCGACAAGGACCAG 448
|| ||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||||||||
Sbjct 297 AAAGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAG 356
Query 449 AACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCTTGGTGAGAAGCTT 508
|||||||||||||| || || ||| | | ||||| ||||| || |||||||||||| ||
Sbjct 357 AACGGTTTCATCTCGGCCGCGGAGTTAAGACATGTTATGACTAATCTTGGTGAGAAG-TT 415
Query 509 -ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAGAT 567
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
Query 568 TAACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAG 604
|| || ||||||||||| || || |||||||| |||
Sbjct 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5