BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56810.1
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486119 jgi|Araly1|486119|fgenesh2_kg.5__2111__AT3G56810.1 1760 0.0
> Ahg486119 jgi|Araly1|486119|fgenesh2_kg.5__2111__AT3G56810.1
Length=1121
Score = 1760 bits (953), Expect = 0.0
Identities = 1073/1130 (95%), Gaps = 11/1130 (1%)
Strand=Plus/Plus
Query 16 GGAATATGAAGAAGAGTAAACGAGAGAACTTGCTTTCTCCTTCATCTTCATGGCGGGAAA 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAATATGAAGAAGAGTAAACGAGAGAACTTGCTTTCTCCTTCATCTTCATGGCGGGAAA 60
Query 76 ACCATAATCCTCCACGGAGAA-ACTCAAACTCCTCCGCCGTCTCCTCCGGCTGCCTCCCC 134
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCATAATCCTCCCCGGA-AAGATTCAAACTCCTCCGCCGTCTCCTCCGGCTGCCTCCCC 119
Query 135 GGGTTCTTCAACCTCTTCCTCTCCACCTTCAACCGCCGCAAATCCATCACCTTGGGATCT 194
|| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 120 GGATTCTTCAACCTCTTCCTCTCTACCTCCAACCGCCGCAAATCCATCACCTTGGGATCT 179
Query 195 AAAAAGCGAGAACAAAGAACCGTCGTTTACGCTTCTCCTCCGCAAGATTCATCAAACGGA 254
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAAAGCGAGAACAAAAAACCGTCGTTTACGCTTCTCCTCCGCAAGATTCATCAAACGGA 239
Query 255 CAAGGCGGAGGAATCGTTGCGCCACCGCTTCCGCACAATGAAGGAGAGGGAGATGCGGCG 314
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 240 GAAGGCGGAGGAATCGTTGCGCCACCGCTTCCGCGCAATGAAGGAGATGGAGATGCGGCG 299
Query 315 AGAGTTAGTCTAGTCGGAGCACTAGAGAAATGTGATCGGGACTTAGAGGAGCTAAGAAGA 374
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AGGGTGAGCCTAGTCGGAGCACTAGAGAAATGTGATCGGGACTTAGAGGAGCTAAGGAGA 359
Query 375 ACCATCGACGTCATCAAAACCACTTACATTCTTCACAAGAGACTTGAGGTTTCTCCGCCG 434
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ACCATCGACGTCATCAAAACCACTTACATTCTTCACAAGAAACTTGAGGTTTCTCCGCCG 419
Query 435 ACCACACGTGAGAATTTTAAATTCTCCGGCACCGTACTGGCAGGAGATGTCGTCGTGGGG 494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACAACACGTGAGAATTTTAAATTCTCCGGCACCGTACTGGCAGGAGATGTCGTCGTGGGG 479
Query 495 ACGCACACGCAGAAGAACACGAAGACGACACAACACGAACCAGACACAGACACGATGTTG 554
||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 480 ACGCAAACGCAAAAGAACACGAAGACGACACAACACGAACCAGATACAGCCACGATGTTG 539
Query 555 TCGATGATGAACCATCACGAATATTGCTGCAAAGACAACAAACCCTACAAAGTCAACAAT 614
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 540 TCGATGATGAACCATCACGAGTA---CTGCAAAGACATCAAACCCTACAAAGTCAACAAC 596
Query 615 ATAAATCTAATCACTAGACCCGATCATTACTCCATTCATGACGTCATTTCCAAGAGATCA 674
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 597 ATAAATCTAATCACCAGACCCGATCATTACGCCATTCATGACGTCATTTCCAAGAGAGCA 656
Query 675 ACGTCAACGACGACGACAGAGTCATGTGGCACGTTGCCCCTTGTGGTGCGGAGGGTAAGA 734
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACGTCAACGACGACAACAGAGTCATGTGGCACGTTGCCCCTTGTGGTGCGGAGGGTAAGA 716
Query 735 CGGAGCTTGATGGAGAGCGTGAACCAAGTTTGTGATGACGTGGCATCTGGTCAACGAAGA 794
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 717 CGGAGCTTGATGGAGAGCGTGAACCAGGTTTGTGATGATGTGGCATCTGGTCAACGAAGA 776
Query 795 GAGGTCGCTAAAATCGGTTTGGCTCTTCATGATCACATCTGTCGCGACTTGATCGCAGAG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GAGGTCGCTAAAATCGGTTTGGCTCTTCATGATCACATCTGTCGCGACTTGATCGCAGAG 836
Query 855 ACCGTTCGAGAGCTCTCCTTCTCTGACTACGACGACGACGAGTTTTATCAATCGCCGGTG 914
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 837 ACCGTTCGAGAGCTCTCCTTCTCCGACTACGATGACGACGAGTTTTATAAATCGCCGGTA 896
Query 915 GATTCTTCTGTTTGTTA-CGGCGGAGGAGGTAAAGGCCAACACATCCGACGTGGCAGCAG 973
||||||||||||| ||| ||| |||||||||||| ||| ||||||||||||||| |||||
Sbjct 897 GATTCTTCTGTTT-TTAACGGTGGAGGAGGTAAACGCCGACACATCCGACGTGGTAGCAG 955
Query 974 CAACTCTCTCCCATTCGACGCGTGTCGAAGAAGATTAGTGTTTTGATGCGATTGATATCT 1033
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 956 CAACTCTCTCCCACTCGACGCGTGTCGAAGAAGATTAGTGTTTTGATGTGATTGATCTCT 1015
Query 1034 TTAGGTTCGTTGTGACGGTTATGGAAGTCATAGTTGCGACAATTTTCACCTATGACACTT 1093
| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1016 T-AGGTTCTTTGTGACGGATATGGAAGTCATAGTTGCGACAGTTTTCACCTATGACACTT 1074
Query 1094 GTTGTTTAAATTATTTTATAATTTTCTTAGCTTATTCAGAATTTAAGACA 1143
||| | || ||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1075 GTT-T--AATTTACTTTATTATTTTCTTAGCTTATTAAGAATTTAAGACA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5