BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56830.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486123 jgi|Araly1|486123|fgenesh2_kg.5__2115__AT3G56830.3 977 0.0
> Ahg486123 jgi|Araly1|486123|fgenesh2_kg.5__2115__AT3G56830.3
Length=864
Score = 977 bits (529), Expect = 0.0
Identities = 587/615 (95%), Gaps = 4/615 (1%)
Strand=Plus/Plus
Query 428 AGGAAGTAGCTGCATCTGGGTCGGAAGACCAACATTTATTCTAGCTGTTTCATGGGATTT 487
||||| ||| | |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 68 AGGAATTAGTTACATCTGGGTCAGAAGACCAACATTTCTTCTAGCTGTTTCATGGGATTT 127
Query 488 GCCATCACGGTGACATTACCTAATTGTGGAAGTAAGTTCTTGCCTAAA-AGGAGTTTCAG 546
||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||
Sbjct 128 GCCATCACGGTGACATTACCTAAGTGTGGAAGTAAGTTCTTGCC-AAAGAGGAGTCTCAG 186
Query 547 AGACAAAGGTGCTTTGTCTCTTGCCATTTGTTCCCTCTGTCATTTCCTT-CATCCTGCAC 605
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 187 AGACAAAGGTGCTTTGTCTCTTGCCATTTGTTCCCTCTGTCATTT-CTTGCATCCTGCAC 245
Query 606 AGCCTCTGTTGGTCAGACATCAAAGGAGGATGTCATGGACAACTATCAAAAGCTCGGTTG 665
||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||
Sbjct 246 AGCCTCTGTTGGTTAGACATCAAAGGAGGATGTCGTGGACAACAATTAGAAGCTCGGTTG 305
Query 666 GTGGGGACAGATTCGATCCAGCATCTGGTTCTTCAAGTAATAATAGCTCCAGAGGTCTAC 725
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 306 GTGGGGACAGATTTGATCCAGCATCCGGTTCTTCAAGTAATAATAGCTCCAGAGGTCTAC 365
Query 726 GGCTAATCAAAGCCATACAAGTTCTCAGAAGTAAGCTTCTGGTGAAAATTCAGGAGATAA 785
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 366 GGCTAATCAAAGCCTTACAAGTTCTCAGAACTAAGCTTCTGGTGAAATTTCAGGAGATAA 425
Query 786 AGAAAGATCTCCCCAAGAAACTGTTCTTTCTCTTGGTGGGATTCTACTCTGCAACTGCTT 845
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 AGAAAGATCTCCCCAAGAAACTGTTCTTTCTGTTGGTGGGATTCTACTCTGCAACTGCTT 485
Query 846 TCTCTACATTCATAGGACAAACAGGAGACTGGGATGTTCTATCTGCTGGATTGGCTGTGC 905
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 486 TCTCTACATTCATAGGACAAACAGGAGACTGGGATGTTCTGTCTGCTGGATTGGCTGTGC 545
Query 906 TTGTAGTTGAATGCATTGGAGCTTTAATGTACAGAGCTTCTATTCCATTAATCAACAAGA 965
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 546 TTGTAGTTGAATGCATTGGAGCTTTAATGTACAGAGCCTCTGTTCCATTAATCAACAAGA 605
Query 966 TGCGGAGCACGATCACCATGTTTAACTATTGGAAGACTGGACTCGCCCTGGGACTGTTCC 1025
||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 606 TGCGGGGCACGATCACTATGTTTAACTATTGGAAGACTGGACTCGCCCTCGGACTGTTCC 665
Query 1026 TAGACTCATTCAAGT 1040
|||||||||||||||
Sbjct 666 TAGACTCATTCAAGT 680
Score = 237 bits (128), Expect = 2e-61
Identities = 168/187 (90%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 1139 GTTTTAGCTTGGACCTCG-GA-AAAGGCAGCGTAACCTGGCTCAAGAATGGAGAGTGGTC 1196
|||||||||||||||||| | |||| | ||| ||||||||||||||||||| | | ||
Sbjct 679 GTTTTAGCTTGGACCTCGTAAGAAAGACCGCGAAACCTGGCTCAAGAATGGACATTTATC 738
Query 1197 AGCAAATTTTTGAAAAGCTGTGTCCCCTTTATGCCTGAAACCAATACATGAGGGTTGTGA 1256
|||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 739 AGCAAAATTTTGACATGCTGTGTCCCCTTTATGCCTGAAACCAATACATGAGGCTTGTGA 798
Query 1257 AGACTTTAACGTTCGAT-GAAGACAAATCTTATGTTTCAGCGTTTCAAATCACAAGGTAG 1315
|||||||||||||| || ||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 799 AGACTTTAACGTTC-ATTGAAGACAAAGCTTAGGTTTCAGCGTTTCAAATCACAAGCTAG 857
Query 1316 AAGACAT 1322
|||||||
Sbjct 858 AAGACAT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5