BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56840.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938644 jgi|Araly1|938644|scaffold_502835.1 2248 0.0
> Ahg938644 jgi|Araly1|938644|scaffold_502835.1
Length=1507
Score = 2248 bits (1217), Expect = 0.0
Identities = 1393/1475 (94%), Gaps = 23/1475 (2%)
Strand=Plus/Plus
Query 3 GAAGCATAAACCTGAAACGGCGGCGTTTAGCTTGATTCGGCCTCTCGAAGCTTGGGCTGC 62
|||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 50 GAAGCACAAACCTGAAACGGCGGCGTTTAGCTTGATTAGG-CTCAGGAAGCTTGGGCTGC 108
Query 63 AAATGCAAACAAAGCCTGTAATACTAAGAAGATGCTACCTTGTCTGGGTAGAAAATGGAT 122
| ||| || | | | |||||||||||| ||||||| ||||||||||||||
Sbjct 109 --A---AAA-TAA----G--A-A-TAAGAAGATGCTTGCTTGTCTTGGTAGAAAATGGAT 154
Query 123 GAGATTGTCAACGAGGAATCTAAAACCAACTTGGAACTT-GATAAACGTCGTTGACGCAA 181
|||||||||||||| ||||||||||||||| |||||||| | |||||| |||||||||||
Sbjct 155 GAGATTGTCAACGATGAATCTAAAACCAACCTGGAACTTCG-TAAACGCCGTTGACGCAA 213
Query 182 GTAAAACAATTGTGAGAGGAATAAGCGGT---GGAGCTGAAACGATAGCTAAAGAGAGAG 238
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 214 GTAGAACAATTGTGAGAGGAATAAGCGGTGGAGGAGCTGAAACGGTAGCTAAAGAGAGAG 273
Query 239 TTGACACCGTAGTGATCGGTGCCGGAGTCGTAGGTTTAGCGGTGGCGCGTGAGCTCAGTC 298
||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 274 TTGACACTGTCGTTATCGGTGCCGGAGTCGTGGGTTTAGCGGTGGCGCGTGAGCTCAGTC 333
Query 299 TCCGCGGCAGAGAAGTTCTGATCCTCGACGCCGCATCATCGTTCGGCACCGTGACGAGTT 358
|||||| |||||||| || ||||| || || || ||||||||||| |||||||||||||
Sbjct 334 GCCGCGGTAGAGAAGTGCTAATCCTTGAAGCAGCCTCATCGTTCGGTACCGTGACGAGTT 393
Query 359 CCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGGCCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGGCCA 453
Query 419 AGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAAATACTGCTCTGAATATGAAATCCCTC 478
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 454 AGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAGGTACTGCTCAGAATATGAAATCCCTC 513
Query 479 ATAAGAAGATTGGTAAGCTTATCGTTGCTACGGGATCCTCTGAGATACCGAAACTAGATC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 514 ATAAGAAGATTGGTAAGCTTATCGTTGCTACGGGATCCTCTGAGATACCGAAATTGGATC 573
Query 539 TATTGATGCATCTTGGAACTCAGAATAGAGTCTCGGGTCTAAGGATGTTGGAAGGTTTTG 598
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 574 TATTGATGCATCTTGGAACTCAGAATGGAGTCTCGGGTCTAAGGATGTTGGATGGTTTTG 633
Query 599 AAGCTATGAGAATGGAGCCACAGCTTCGTTGTGTTAAAGCTTTGCTATCTCCTGAATCTG 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 634 AAGCTATGAGAATGGAGCCACAGCTTCGTTGTGTTAAAGCATTGCTATCTCCTGAATCTG 693
Query 659 GCATTCTTGATACACATTCCTTCATGCTATCTTTAGTGGAAAAGAGTTTTGATTTCATGG 718
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 GGATTCTTGATTCACATTCCTTCATGTTATCTTTAGTGGAAAAGAGTTTTGATTTCATGG 753
Query 719 TTTACAGGGATAACAACAACTTGAGACTACAGGGAGAAGCACAGAACAACCACGCAACTT 778
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 754 TTTACAGGGATAACAACAACTTGAGACTACAGGGAGAAGCAGAGAACAATCACGCAACTT 813
Query 779 TCTCGTACAACACGGTGGTTTTAAACGGTCGTGTTGAAGAAAAGAAGATGCATTTGTATG 838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 814 TCTCATACAACACGGTGGTTTTAAACGGTCGTGTTGAAGAAAAGAAGATGCATTTGTTTG 873
Query 839 TTGCTGATACCAGATTTTCTGAATCTCGGTGTGAGGCAGAAGCACAGCTTGAGCTTATCC 898
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 874 TTGCTGATACCAGATTCTCTGAATCTCAGTGTGAGGCAGAAGCACAGCTTGAGCTTATCC 933
Query 899 CTAATCTTGTTGTTAACTCTGCGGGATTAGGTGCTCAAGCTCTAGCAAAGAGACTACATG 958
||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 934 CTAATCTCGTTGTTAACTCTGCGGGACTAGGTGCTCAAGCTCTAGCAAAGAGATTCCATG 993
Query 959 GCTTAGATCATCGATTTGTTCCTTCGTCTCACTATGCTCGTGGATGCTACTTTACACTAT 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 994 GCTTAGATCATCGATTTGTTCCTTCGTCTCACTATGCCCGTGGATGCTACTTTACACTAT 1053
Query 1019 CGGGCATAAAGGCTCCACCTTTTAATAAACTTGTGTATCCTATACCTGAGGAAGGAGGTC 1078
| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CAGGCACAAAGGCTCCGCCTTTTAATAAACTTGTGTATCCTATACCTGAGGAAGGAGGTC 1113
Query 1079 TCGGTGTCCATGTCACTGTAGATTTGAACGGACTTGTTAAGTTTGGACCTGATGTAGAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TCGGTGTCCATGTCACTGTAGATTTGAACGGACTTGTTAAGTTTGGACCTGATGTAGAAT 1173
Query 1139 GGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAAGTTTGATTATCGTGTAAACC 1198
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1174 GGATTGAATGCGCAGATGATACATCAAGCTTCCTCAACAAATTTGATTATTGTGTAAACC 1233
Query 1199 CACAACGATCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCCGGATCTCAAAGATG 1258
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1234 CACAACGAGCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCAGGATCTCAAAGATG 1293
Query 1259 GATCATTGGAACCGGGTTATTCAGGCATCCGTCCTAAGCTTTCCGGGCCAAAACAGTCTC 1318
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1294 GATCATTGGAACCCGGTTATTCAGGCATCCGTCCTAAGCTTTCCGGACCAAAACAGTCTC 1353
Query 1319 CTGCAGATTTTGTCATACAGGGAGAGGAGACTCATGGAGTTCCTGGTCTTGTTAATCTCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CTGCAGATTTTGTCATACAGGGAGAGGAGACTCATGGAGTTCCTGGTCTTGTTAATCTCT 1413
Query 1379 TTGGCATCGAATCACCTGGTTTAACTTCAAGCTTGGCTATTGCAGAACATATAGCAAACA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TTGGCATCGAATCACCTGGTTTAACTTCAAGCTTGGCTATTGCAGAACATATAGCAAACA 1473
Query 1439 AA-TTCTTGAGATGAATTTGAGTTAAAA-GTTTAC 1471
|| || |||||||||||||||||||||| || |||
Sbjct 1474 AACTT-TTGAGATGAATTTGAGTTAAAAAGTCTAC 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5