BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56860.3
Length=2614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3 2292 0.0
Ahg934926 jgi|Araly1|934926|scaffold_402914.1 660 0.0
> Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3
Length=2242
Score = 2292 bits (1241), Expect = 0.0
Identities = 1495/1611 (93%), Gaps = 43/1611 (3%)
Strand=Plus/Plus
Query 69 GGGGAAAATCAGCTTTTTGGAGAAGAAACCAAAG--A-AAACATTCGAAACCCTAAAATC 125
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 1 GGGAAAAATCAGCTTTTTGGAGAAGAAACCAAAGAAATAAACATTCGAAACCCTAAAA-C 59
Query 126 T-CCATTAGAATTCGAAAATGACAAAGAAGAGAAAGCTCGAAGGAGAAGAATCTAACGAA 184
| |||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||
Sbjct 60 TCCCATTAGAATTCGACAATGACAAAGAAGAGAAAGCTCGAA-G-G-AGAATCTAACGAA 116
Query 185 GCTGAAGAACCGTCGCAGAAGCTGAAGCAGACGCCGGAGGA-G-G-AGCAGCAGCTTGTA 241
|| |||||||||||||||||||||||||||||||||||||| | | |||||||||| ||
Sbjct 117 GCGGAAGAACCGTCGCAGAAGCTGAAGCAGACGCCGGAGGAGGAGCAGCAGCAGCTCGTT 176
Query 242 ATTAAAAATCAGGATAATCaaggagacgttgaagaagttgaatacgaggaagtagaggaa 301
||| |||| | ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 177 ATT-AAAA-C-------TCAAGCAGACGTCGAAGAAGTTGAATACGAGGAAGTAGAGGAA 227
Query 302 gagcaagaagaagaagtagaagatgatgacgatgaagatgatggtgat-gagaatgagga 360
|||||||||||||||||||||||||||||||| || || |||| ||| | | |||| |
Sbjct 228 GAGCAAGAAGAAGAAGTAGAAGATGATGACGAAGACGACGATGACGATGGCG-ATGATAA 286
Query 361 tcagacggatgGGAATCGTATAGAGGCGGCGGCGACGTCTGGATCTGGCAATC-A----A 415
|||||||| || |||||||| |||||||||||||||||||||||||| |||| | |
Sbjct 287 TCAGACGGCTGCTAATCGTATTGAGGCGGCGGCGACGTCTGGATCTGGGAATCAAGGGGA 346
Query 416 -G---A--A-GATGATGACGATGAACCAATTCAGGATCTGTTGGAACCATTTTCAAAGGA 468
| | | |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 347 TGTAAATGATGATGATGACGATGAGCCAATTCAGGATCTGTTGGAACCGTTTTCAAAGGA 406
Query 469 GCAAGTTTTGAGTCTTCTTAAGGAAGCAGCGGAGAAGCATGTTGATGTAGCCAATCGAAT 528
||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 407 ACAACTTTTGAGTCTTCTTAAAGAAGCAGCGGAGAAGCATCTTGATGTAGCCAATCGAAT 466
Query 529 TAGGGAAGTAGCTGATGAGGACCCTGTTCATCGGAAGATCTTTGTGCACGGTCTTGGTTG 588
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 467 CCGGGAAGTAGCTGATGAGGACCCTGTTCACCGGAAGATCTTCGTGCACGGTCTTGGTTG 526
Query 589 GGATACGAAAACAGAGACGCTTATTGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTG 648
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 527 GGATACCAAAACAGAGACGCTTATCGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTG 586
Query 649 CAAGGCTGTGTTTGATAAGATCTCAGGGAAATCTAAAGGTTATGGCTTTATTCTGTACAA 708
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 587 CAAGGCTGTGTTTGATAAGATCTCAGGGAAATCTAAAGGTTATGGCTTTATTTTGTTCAA 646
Query 709 GTCTCGTTCAGGTGCTCGCAACGCACTCAAGCAGCCTCAGAAGAAGATTGGTAGTCGTAT 768
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 647 GTCTCGGTCAGGTGCTCGCAATGCACTTAAGCAGCCTCAGAAGAAGATTGGTAGTCGTAT 706
Query 769 GACGGCATGCCAATTGGCTTCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGC 828
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GACGGCATGTCAATTGGCTTCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGC 766
Query 829 AGCTGTTTCAGCGCCTGCTCAGCATTCGAACTCGGAGCATACTCAGAAAAAGATTTATGT 888
|||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 767 AGCTGTCTCAGCGCCTGCTCAGCATTCGAACTCTGAGCACACGCAGAAAAAGATTTATGT 826
Query 889 TAGTAATGTCGGAGCAGAGCTTGATCCACAGAAGTTGCT-GATGTTTTTCTCAAAGTTTG 947
||||||||| |||||||||||||||||||||||||| || | ||| |||||||||||||
Sbjct 827 TAGTAATGTTGGAGCAGAGCTTGATCCACAGAAGTTACTTGG-GTTCTTCTCAAAGTTTG 885
Query 948 GAGAAATTGAAGAAGGTCCTTTGGGTCTTGATAAGTATACTGGGAGACCTAAAGGTTTCT 1007
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 886 GAGAGATTGAAGAAGGTCCTTTGGGTCTTGATAAGTTTACTGGGAGACCTAAAGGTTTCT 945
Query 1008 GTCTCTTTGTTTATAAGTCGTCTGAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGA 1067
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 946 GTCTCTTTGTTTATAAGTCGGCTGAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGA 1005
Query 1068 CTTTTGAAGGCCATATCTTGCATTGCCAGAAAGCTATCGATGGTCCCAAACCGGGCAAGC 1127
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTTTTGAAGGTCATATCTTGCATTGCCAGAAAGCTATCGATGGTCCCAAACCGGGCAAGC 1065
Query 1128 AGCAGCAGCATCACCATAACCCACACGCCTATAACAATCCTCGTTACCAAAGGAATGATA 1187
||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1066 AGCAGCA---TCACCATAACCCACACGCCCACAACAATCCTCGTTACCAAAGGAATGATA 1122
Query 1188 ACAATGGTTATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGGA 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1123 ACAATGGTTATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGAA 1182
Query 1248 TGGGTGGTCCAACGGCACAGGTGATAAACCCGGCCATTGGACAGGCCTTGACAGCTTTAT 1307
||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1183 TGGGTGGTCCAGCGACACAGGCGATAAACCCGGCCATTGGACAGGCCTTGACAGCTATAC 1242
Query 1308 TGGCATCTCAGGGAGCTGGTTTGGCTTTTAATCCGGCAATTGGACAGGCTTTGTTGGGTT 1367
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1243 TGGCATCTCAGGGAGCTGGTTTGGCTTTTAATCCGGCGATTGGACAGGCTTTGTTGGGTT 1302
Query 1368 CCTTGGGGACAGCTGCTGGTGTAAACCCAGGGAATGGAGTTGGAATGCCAACTGGTTACG 1427
|||||||||||||| | || |||||||| | |||||||||||||||||||||||||| |
Sbjct 1303 CCTTGGGGACAGCTACAGGCGTAAACCC-G--AATGGAGTTGGAATGCCAACTGGTTATG 1359
Query 1428 GTACTCAAGCTATGGCACCGGGGACAATGCCTGGGTACGGTACACAACCTGGGTTGCAAG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1360 GTACTCAAGCTATGGCACCGGGGACAATGCCTGGGTACGGTACACAACCTGCGTTGCAAG 1419
Query 1488 GCGGTTATCAGACTCCGCAACCTGGTCAAGGCGGTACAAGTAGAGGGCAACATGGTGTCG 1547
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1420 GTGGTTATCAGACTCCACAACCTGGTCAAGGCGGTACAAGCAGAGGGCAACATGGTGTCG 1479
Query 1548 GGCCATACGGTACTCCTTACATGGGTCACTAAATGTATCATGTATCCATCCACTCAGTCA 1607
||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1480 GGCCATACGGTGCTCCCTACATGGGCCACTAAATGTATCATGTATCCACCCACTCAGTCA 1539
Query 1608 AACTTGGTGGGAAGTGGTGCAAGCTTCTCAACGACACAGCTGAAGAATGAT 1658
||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1540 AACTTGGCGG-AAGTGGTGCAAGCTTCTCAATGACACAGCTGAAGAATGAT 1589
Score = 420 bits (227), Expect = 3e-116
Identities = 371/435 (85%), Gaps = 32/435 (7%)
Strand=Plus/Plus
Query 1702 GAATAGAGTTTCTCGACAACAGGCAGTTAAGTCTTTGGATCTCCACAACATGCTTGCAAC 1761
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1597 GAAGAGAGTTTCTCGACAACAGGCAGTTAAGTCTTTGGATCTCCACAACATGCAT-C--C 1653
Query 1762 TAAAAGGTAAGTTCAAAGTGTTGAGTATCTTCTTTGGCTATATACAACGTGC-TTCCAAT 1820
|| | | |||| | | | | ||||||||||||||||||||||| || || |
Sbjct 1654 ----AGCT-A----AAAG-G-T-A--A-GTTCTTTGGCTATATACAACGTGCTTTGCAGT 1698
Query 1821 TGAAGGGTAAGTAATCAAAAGTGTTAAAAGTATATCTCTCAGTGCGAATCTCTTGCCTAT 1880
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1699 TGAAGGGTAAGTAATCAAAAGTGTTTGAAGTATATCTCTCAGCACGAATCTCTTGCCTAT 1758
Query 1881 ATATGTTCTTGTTTATTGGTCCTAGTCCC-TCTTTGAAGTGATAAAAGTTGGTTTTGGTC 1939
||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||
Sbjct 1759 ATATGTTCTTGTTAATTGGTCCTA-TCCCCTCTTTGAAGTGTTAAAAGTTGATTTTGGTC 1817
Query 1940 TAGAGAGCATGTACCTTCAGGTCCTTGTGCACAAGGTTCAGGGATTATTAGAAAAGTCAC 1999
|| | |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 1818 TAAAAAGCATGTACCTTCAAGTCCTTGTGCACAAGGTTCAGGGATTAACAGAAA-GTCAC 1876
Query 2000 AAGAGTACGAGGTGATATATTATTTCCCTTAATGTTT-CAGAGGAGTTTATAAAGGCGTG 2058
||||||| | |||||| ||| || ||||| |||||| | |||||||||| | |||||||
Sbjct 1877 AAGAGTATTAAGTGATAGATTGTTCCCCTTGATGTTTTC-GAGGAGTTTAGAGAGGCGTG 1935
Query 2059 AATGCATAAAGttt-tt--t---tGGTGATGATTGCTTTGATGGTGAAATCT-CTTTTTG 2111
| ||||| |||||| || | ||||||||||| ||||||||||| | ||| ||||| |
Sbjct 1936 AGTGCATGAAGTTTGTTGGTGAATGGTGATGATTACTTTGATGGTGGAGTCTTCTTTT-G 1994
Query 2112 GAAAAGTGCAGCTTT 2126
|||||||||||||||
Sbjct 1995 GAAAAGTGCAGCTTT 2009
Score = 134 bits (72), Expect = 4e-30
Identities = 88/95 (93%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 2197 AGCTGAAGTGGAATTGGGGGAAGTAAGTAGTAGAGTTTTGTGTATTTGATCTCAAGTCAA 2256
||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2010 AGCTGAAGTGGAA--GTGGGAAGTAAGTAGTAGAGTTTTGTGTCTTTGATCTCAATTCT- 2066
Query 2257 CAATCTCTCAATTGTTATGTCAAGTTTCGAAAAGG 2291
|||||||||||||||||||||||||||||||||||
Sbjct 2067 CAATCTCTCAATTGTTATGTCAAGTTTCGAAAAGG 2101
> Ahg934926 jgi|Araly1|934926|scaffold_402914.1
Length=1384
Score = 660 bits (357), Expect = 0.0
Identities = 953/1226 (78%), Gaps = 100/1226 (8%)
Strand=Plus/Plus
Query 382 AGAGGCGGCGGCGACGTCTGGATCTGGCAATC-----AA-GAAGATGATGAC---GATGA 432
|||||||| | || |||| |||||||| |||| || || ||||||||| || ||
Sbjct 200 AGAGGCGGAGACGTCGTCCGGATCTGGGAATCGGGGAAATGAGGATGATGACGAAGAAGA 259
Query 433 ACCAATTC-AGGATCTGTTGGAACCATTTTCAAAGGAGCAAGTTTTGAGTCTTCTTAAGG 491
||| | || ||||||| |||||||| |||||||| || ||| |||||| |||||| ||||
Sbjct 260 ACCCA-TCGAGGATCTATTGGAACCGTTTTCAAAAGATCAACTTTTGATTCTTCTCAAGG 318
Query 492 AAGCAGCGGAGAAG-CAT-GTTGATGTAGCCAATCGAATTAGGGA-AGTAGCTGATGAGG 548
|||| || ||| || ||| | ||||| || |||||| | ||| || || ||||| |
Sbjct 319 AAGCTGCAGAG-AGACATCG-CGATGTTGCTGATCGAA-TCCGGATTGTGGCGGATGAAG 375
Query 549 ACCCTGTTCATCGGAAGATCTTTGTGCACGGTCTTGGTTGGGATACGAAAACAGAGACGC 608
| |||||||||| |||||||| || ||||| ||||| |||||||| ||| | || || |
Sbjct 376 ATTCTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCCGAAACAC 435
Query 609 TTATTGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGC-AAGGCTGTGTTTGATAAG 667
|||| |||||||||||||| ||||||||||||||||||||| || | |||| ||||||||
Sbjct 436 TTATCGAAGCTTTTAAGCAATACGGAGAGATCGAAGATTGCAAATG-TGTGGTTGATAAG 494
Query 668 ATCTCAGGGAAATCTAAAGGTTATGGCTTTATTCTGTACAAGTCTCGTTCAGGTGCTCGC 727
|| || ||| |||||||||||||||||||||| || | ||||| | || ||||||||
Sbjct 495 ATTTCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGT 554
Query 728 AACGCACTCAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGCCAATTGGCT 787
||||| || ||||||||||||||||||||||| | ||||||||| || ||||| ||||
Sbjct 555 AACGCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCTTGCCAGCTGGCG 614
Query 788 TCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTTTCAGCGCCTGCT 847
|||| |||||||| || | ||| | | ||| | | | || || ||||||
Sbjct 615 TCTATAGGACCTG--TTCAG-GGA------AACCCTG-T-C-G-TG-----GCTCCTGCT 656
Query 848 CAGCA-TTCGAACT-CGGAGCATACTCAGAAAAAGATTTATGTTAGTAATGTCGGAGCAG 905
||||| ||| || | | ||| || ||||| ||||| ||||||||||| || | ||||
Sbjct 657 CAGCATTTC-AA-TCCTGAGAATGTTCAGAGGAAGATCTATGTTAGTAACGTTAGTGCAG 714
Query 906 AGCTTGATCCACAGAAGTTGCT-GATGTTTTTCTCAAAG-TTTGGAGAAATTGAAGAAGG 963
| |||||||| |||||| |||| || |||||| || ||| ||||| || |||||||||||
Sbjct 715 ATCTTGATCCGCAGAAGCTGCTGGA-GTTTTTTTC-AAGATTTGGGGAGATTGAAGAAGG 772
Query 964 TCCTTTGGGTCTTGAT-AAGTATACTGGGAGACCTAAAGGTTTCTG-TCTCTTTGTTTAT 1021
||||||||| |||||| |||| |||||||||||||||||||||| | | | ||||| |||
Sbjct 773 TCCTTTGGGGCTTGATAAAGT-TACTGGGAGACCTAAAGGTTTC-GCTTTGTTTGTCTAT 830
Query 1022 AAG-TCGTCT-GAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGCC 1079
|| || || ||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 831 -AGATC-CCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCC 888
Query 1080 ATATCTTGCATTGCCAGAAAGCTA-TCGATGGTCCCAAACCGGGCAAGCAGCAGCAGCAT 1138
|| ||||||||||||| ||||| | | ||||| || |||| || ||||| || || |||
Sbjct 889 ATGTCTTGCATTGCCACAAAGCAAAT-GATGGGCCTAAACAGGTTAAGCAACATCAACAT 947
Query 1139 CACCATAACCCACACGCCTATAACAAT-CCTCGTTACCAAAGGAATGATAACAATGGTTA 1197
|||||||| | ||| | || ||| || || ||||||||||| || | |||||||||
Sbjct 948 AACCATAACTCTCACAA-TC-AA-AATTCC-CGCTACCAAAGGAACGACAGCAATGGTTA 1003
Query 1198 TGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGGATGGGTGGTCC 1257
|||| | |||||||| ||||||||| |||| |||||||| | | | || | |
Sbjct 1004 TGGTGCACCTGGAGGCCATGGACATTTCATAGCTGGTAATA-ACCAAGC-TGCG----C- 1056
Query 1258 AACGGCACAGGTGATAAACCCGGCCATTGGACAGGCC-TTGACAGCTTTATTGGCATCTC 1316
| ||| | | ||| |||||| ||||| || ||| || |||||||| |||||||||
Sbjct 1057 A--GGC---GTT--TAA-CCCGGCTATTGGCCAAGCCCTT-ACAGCTTTGCTGGCATCTC 1107
Query 1317 AGGGAGCTGGTTTGGCTTTTAATCCG-GCAATTGGACAGGCTTTGTTGGGTTCCTTGGGG 1375
|||| ||||| |||| ||| || || ||| |||| |||||||||||||| | || |||
Sbjct 1108 AGGGTGCTGGGTTGGGTTTGAA-CCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGG 1166
Query 1376 ACAGCTGCTGGTGTAAACCCAGG-GAATGGAGTTGGAATGCCAACTGGTTACGGTACTCA 1434
|||||| | |||||| | || || |||||||||| ||| || ||||||||
Sbjct 1167 ACAGCTA--G-------CCCAGGAGC-TGTAGGAGGAATGCCAAGTGGCTATGGTACTCA 1216
Query 1435 AGCTA-TGGCAC-C--GGGGACAATGCCTGGGTACGGTACACAA-CCTGGGTTGCAAGGC 1489
||| | | ||| | |||| | || |||||||||||| | ||| || ||||| || |||
Sbjct 1217 AGCAAATATCACGCCTGGGGTCTAT-CCTGGGTACGGTGCCCAAGCC-GGGTTTCAGGGC 1274
Query 1490 GGTTATCAGACTCCGCAACCTGGTCAAGGCGGTACAAGTAGAGGGCAACATGGTGTCGGG 1549
||||||||||||| |||||||||||| |||||| | | |||||||| |||||||| |||
Sbjct 1275 GGTTATCAGACTCAGCAACCTGGTCAGGGCGGTGCTGGAAGAGGGCAGCATGGTGTTGGG 1334
Query 1550 CCATACGGTACTCCTTACATGGGTCA 1575
|| ||| |||||||||||||||
Sbjct 1335 T-AT--GGTGGTCCTTACATGGGTCA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98577554060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5