BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56870.1
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324194 jgi|Araly1|324194|fgenesh1_pm.C_scaffold_5001738 1921 0.0
> Ahg324194 jgi|Araly1|324194|fgenesh1_pm.C_scaffold_5001738
Length=2124
Score = 1921 bits (1040), Expect = 0.0
Identities = 1231/1322 (93%), Gaps = 18/1322 (1%)
Strand=Plus/Plus
Query 1012 TTCAGAATAAGCAAATTGTTTTGTACTCTAGTGTGTCTAGAGAGGAGATGGAATTGGATG 1071
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 806 TTCAGGATAAGCAAATTGTTTTGTACGGTAGTGTGCCTAGAGAGGAGATGGAATTGGATG 865
Query 1072 TTAATCCACAACATTCAGAATATGAGAACATTGGTTGTGTAAAGAACTTCATTTCTGCTT 1131
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||
Sbjct 866 TTAATCCACAACATTCAGAATATGAGAACTTTGGTTGTGTCGAGAACCTCATTTCTTCTT 925
Query 1132 ACACAAGCTCTGGGTGCGAAGAAGAAGATAAAGAGGATGAGGAAAGCAATGATAT-AAAG 1190
|||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 926 ACACAAGCTCGGGGTGCGAAGAAGC---TAAAGAGGATGAGGAAAGCAATGAT-TCAAAG 981
Query 1191 GCTAACTTAGATATGAGTGTAACTGGTTTGGAGATTGTGAAGATAGAAGCTCCAGAAATA 1250
| || |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 982 GGTAGCTTAGACATGAGCGTAACTGGTTTGGAGATTGTCAAGATAGAAGCTCCAGAAATA 1041
Query 1251 CTTGCTATTGATTACCCCGGTTGTTTGTCCATCATCAATTTTTGTGCAGAAGATTCCGAG 1310
||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1042 CTTGCTATTGATTACTCGGGTTGTTTGCCCATCATCAATTTTTGTATAGAAGATTCCGAC 1101
Query 1311 ATTGTGTGGGAAACTGAAGACATTACTAAGGATAATTTTCCTGAAGCAACTGATATTCTC 1370
||| |||||||||||||||||||||| || ||| |||||||||||||| |||||||||||
Sbjct 1102 ATTCTGTGGGAAACTGAAGACATTACGAAAGATGATTTTCCTGAAGCAGCTGATATTCTC 1161
Query 1371 CAGCTGACCAACTGTTGTAATTCACTGGATAATCTGCAACCAGTTCCTGAAGACAGCACA 1430
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1162 CAGCTGACCAACTGTTGTAATTCACTGGATAATTTGCAACCAGTTCCTGATGACAGCACA 1221
Query 1431 AGTTCAAAAGAAGAAGATCATTTGACAGAAAGATTACAACAATCTTTATACTCCAAACAT 1490
| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1222 ATTTCATTAGAAGAATATCATTTGCCAGAAAGATTACAACAATCTTTATACTCCAAACAT 1281
Query 1491 GAAGATGAAGCAGGAGACCACAAACTATCACAACTGTATAAGGAACCTGATGAGGTTCAA 1550
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1282 GAAGATGAAGCAAGAGACCACAAGCTATCACAACTCTATAAGGAACCTGATGAATTTCAA 1341
Query 1551 AAAGTTGCAGAGACTGACAGTATCCAGCAACAACAACCACACCACCAACCAGAAAATCTA 1610
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1342 AAAGTTGCAGAGACTGACAGTATCCAGCAACAACAGCCACATCACCAACCAGAAAATCTA 1401
Query 1611 CTCTCTGGGAGAAAGGCTTTATCTCCCACCTCTCAAGAAAAACTTCGCAAGGCAATGGAG 1670
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1402 CTCTCAGGGAGAAAGGCTTTATCTCCAACCTCTCAAGAAAAACTTCGCAAGGCAATGGAG 1461
Query 1671 CACCCTGATTCACCTGAGAAAAGGAGTAAAAAATCAAGAGGGAAACTCTACTTCAGTAGC 1730
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 CACCCCGATTCCCCTGAGAAAAGGAGTAAAAAATCAAGAGGGAAACTCTACTTCAGTAGT 1521
Query 1731 CAAAACTCACATAGGATCCTTAAGGCTCAAGGGCTGGATAACATTGACCGAGTGGAAATC 1790
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1522 CAAAACTCACATAGGATCCTTAAGGCTCAAGGGCTGGATACCATCGACCGAGTGGAAATC 1581
Query 1791 ATTCCAAGCTCAAAGCAAGCCATTCAAAAAGCAACTAATAATACGCGGCAAATGAAGTAT 1850
|||||| ||||||||||||||||||||||||||| |||||| || ||||||| || |
Sbjct 1582 ATTCCAGGCTCAAAGCAAGCCATTCAAAAAGCAAGTAATAAAACTCGGCAAA-GA-G--- 1636
Query 1851 CAAAGAGCGACACACAAGTTTCCACGTCGAAATACTCAAGCAGCAAAAGCACAGCCTTTT 1910
| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1637 C------C-ACACACAAGTTTCCACGTCGAGGGACTCAAGCAGCAAAAGCACAGCCTTTT 1689
Query 1911 AGCACTGGAGGCACTTCTATACAAGGATGCTCACAGAAAGCTATTGCCTTCTCGCAAGGG 1970
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 AGCACTGGATGCGCTTCTATACAAGGATGCTCACAGAAAGCTATTGCCTTCTCGCAAGGG 1749
Query 1971 CAAATGCGTGATTTCCAAAATGTTGCAGCTAGGCTCACAAAAGAGCTGAAATCGATGAGA 2030
||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 CAATTGTGTGATTTCCAATGTGTTGCAGCTAGGCTCACAAAAGAGCTGAAATCGATGAGA 1809
Query 2031 CAAATCACAAAGAGATGTCTGCAAGCTGAAAGCAACACCTCCAACATGTCTGACTGTAAC 2090
||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1810 CAAATTACAAAGAGATGTCTGCTAGCTGAAAGCAACACCTCCAACATCTCTGACTGTAAC 1869
Query 2091 TTAGATGAGGTGAAAACTGTGATTGGAAATGCAGAAAAAACTGAAGAGAGTTGCAAGAAA 2150
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1870 TTAGATGAGGTGAAAACTGTGATTGGAAATGCAGAAAAAACAGAAGAGAGTTGCAAGAAA 1929
Query 2151 TGGCTTTCGATCATTGAACGTGACTGTAATCGGTTTTGCAAACTCATGAGTATGGTCAGA 2210
||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1930 TGGCTTTCGATTACAGAGCGTGACTGTAATCGGTTTTGCAAACTCATGGGTATGGTCAGA 1989
Query 2211 GAAGATTCTCCAGCTACTGAGAACATTGTTCATAAGAAAAAGAAGATTAGATTTGCAGAT 2270
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1990 GAAGATTCTCCAGCTACTGAGAACGTTGTTCATAAGAAAAAGAAGATTAAATTTGCAGAT 2049
Query 2271 GATGCAGGAGGAGATCTATGCCATGTCAAGGTTTTTGAGATTGATTTGGAATCTGAATCA 2330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2050 GATGCAGGAGGAGATCTTTGCCATGTCAAGGTTTTTGAGATTGATTTGGAATCTGAA-CA 2108
Query 2331 TA 2332
||
Sbjct 2109 TA 2110
Score = 948 bits (513), Expect = 0.0
Identities = 651/715 (91%), Gaps = 19/715 (3%)
Strand=Plus/Plus
Query 258 ATGGTGGAGTTAAGAAGTAGCACACACTTGAACTCTCATGTACATTATATCCGAACCATT 317
||||||| ||||||||||||||| || |||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGTGGTGTTAAGAAGTAGCACCCATTTGAACTCTCATATGCATTATATCCGAACCATT 60
Query 318 AAAGACGGATCTATCAAAATAGTGATGAATATGGATGGC-AGAAGAAAACCAAAGCTCAA 376
|||||||||||||||||||| || ||||||||||| || ||||| ||| ||||||||||
Sbjct 61 CAAGACGGATCTATCAAAATACTGGTGAATATGGAT-GCTAGAAGGAAATCAAAGCTCAA 119
Query 377 ATTTAGACAGTTGGTGGATATATACAATCTTGAAGACAGTCAAGGTGTTGAGTCAATTCC 436
|||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||
Sbjct 120 ATTTAGACAGTTGGTGGATATATACAATCTTGAACACAGTCAAGATGATGAGTCAGTTCC 179
Query 437 AAGAGTAGTCAGGGATTTGGACAATGGTTCTGATTTTACACAAGGTTCTGAGTCTGAAGA 496
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 180 AAGAGTAGTCAGGGATTTGGACAATGTTTCTGATATTACACAAGGTTCTGAGTCTGAAGA 239
Query 497 TTTTAGCATGACAACATTGGAGATGATTCAGAAACAATGCAAAGAAAGGAAAAGGAAACT 556
|||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 240 TTTTAGCATGACAACACTGGAGAAGATTCGGAAACAATGCAAAGAAAAGAAAAGGAAACT 299
Query 557 TAGAAACTGCAGAGATACTACTACTGAGACATTC-TCGAACGTTGAAGTTAAAAAAGAGT 615
||||| | || | || | |||||||||| || | || ||||||||||||||||||||||
Sbjct 300 TAGAATCCGC-G-GAGA-TACTACTGAGTCA-GCATCAAACGTTGAAGTTAAAAAAGAGT 355
Query 616 ATGTGACCCAAGATGAAGGATGTGATATTGAGGAGCCTCTTAGCAGTTGGGATACGAAAT 675
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATGTGACTCAAGATGAAGGATGTGATATTGAGGAGCCTCTTAGCAGTTGGGATACGAAAT 415
Query 676 TCTCCAAGAGAAGGAAGAAGAAGCAGGAGCGTAAAAAAGCAAAGTGTGGTACTTCTACTT 735
||||||||||||| ||||| ||||| ||||||||| |||||||||| | |||||||||
Sbjct 416 TCTCCAAGAGAAGAAAGAAAAAGCAAGAGCGTAAA---GCAAAGTGTGTTTCTTCTACTT 472
Query 736 CCTCTCCTCCATCTGTGG-AAAAGGTTGATTTGCC-GTTGGTGCTCTTTCATGTCAAGCC 793
||||||| |||||| | ||||| ||||||||| || |||| | ||||||||||||||
Sbjct 473 CCTCTCC---ATCTGTTGCAAAAG-TTGATTTGCATGT-GGTGTTGTTTCATGTCAAGCC 527
Query 794 TGAAGTTTGGGATGATAGCTATTCAGTTTCTGAAGCCATGGATTGTAGTGAAA-AGTCAG 852
||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 528 TGAAGCTTGGGATGATAGTTATTCAGTTTCTGAAGCCATGGATTGTAGC-AAAGAGTCAG 586
Query 853 AATCTCCTATAAATACAGTGTTGGTGGAAGAAATAATGCTTGATTCGTCCAGTGACATGA 912
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 587 AATCTCCTACAAATACAGTGTTGGTGGAAGAAATAATGCTTGATTCGTCCAGGGACATGA 646
Query 913 GGCTGGTTCCATACTGCAGTGCAGAGCCAAATTTTCCCGGAGTGGTAGCCATTGA 967
||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||
Sbjct 647 GGCTGGTTCCATATTGCAGTGCAGAGCCAATTTTTCCTGGAGTGGTTGCCATTGA 701
Score = 69.4 bits (37), Expect = 1e-10
Identities = 47/51 (92%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 959 AGCCATT-GAGGAAGCTTTTGAAGATGCATCAGAAGAGTTT-AGCGATGCT 1007
|||| || ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 719 AGCCGTTAGAGGAAGCTTTTGAAGATGCATCAGAAGAGTTTGA-CGATGCT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91911761185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5