BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56880.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486129 jgi|Araly1|486129|fgenesh2_kg.5__2121__AT3G56880.1 1107 0.0
> Ahg486129 jgi|Araly1|486129|fgenesh2_kg.5__2121__AT3G56880.1
Length=956
Score = 1107 bits (599), Expect = 0.0
Identities = 871/988 (88%), Gaps = 76/988 (8%)
Strand=Plus/Plus
Query 69 TGATCCACTAAAAAAGATTCTCTTTTCTCTTCTTCTCCG--GT-GATTTACTTACTTAAC 125
|||||||||||||||||||| ||||| | |||||||||| | || |||||||||||||
Sbjct 26 TGATCCACTAAAAAAGATTCCCTTTT-T-TTCTTCTCCGATTTAGAATTACTTACTTAAC 83
Query 126 AATCATGGCGTCGTCGGAGGGATTAGCAAGCGTTGATCCTTGGTCATTCCGTCAAAACTT 185
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 84 CATCATGGCTTCGTCGGAGGGATTAGCAAGCGTTGATCCTTGGTCCTTCCGTCAAAACTT 143
Query 186 CAACATCGATTCGTGGCTACTCTCTGATTCCTTCTCACACGACAGTGATATACTCGCTAA 245
|||||||||||| |||||| |||||||||||||||| ||||| |||||| ||||||||||
Sbjct 144 CAACATCGATTCATGGCTAATCTCTGATTCCTTCTCTCACGATAGTGATTTACTCGCTAA 203
Query 246 AGCTCTTCACAGATCCATCTCCACTTCCACCGAATCATCTCCTCTTTCTCCTTCATCTTT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGCTCTTCACAGATCCATCTCCACTTCCACCGAATCATCTCCTCTTTCTCCTTCATCTTT 263
Query 306 CTTCGACTCTTCAACCGCCGCCGTC-GA-T-T----TTTCTCCTCCTCAAACTCTCTCCA 358
||||||||||||||||||||||| | | | | ||| | |||||||||||||||| |
Sbjct 264 CTTCGACTCTTCAACCGCCGCCGCCTTAGTCTCCGATTT-TTCTCCTCAAACTCTCTCTA 322
Query 359 ACGTCTCTTTCGGCTCAGATCCAGAAATCCCCGCCGCTAGTGCTCTTGGTCTCGGGAAAC 418
|||||||||||||||||||||||||||| | | | | | | |||||
Sbjct 323 ACGTCTCTTTCGGCTCAGATCCAGAAAT------C-C-----C-C---G---C--GAAAC 361
Query 419 GAAAACGTGGTCCTGGTGTTTCCGGTGGTAAACAAACGAAACGCCGATCTCGAGTTTCTA 478
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 GAAAACGTGGTCCTGGTTTTTCCGGTGGTAAACCAACGAAACGCCGATCTCGAGTTTCTA 421
Query 479 ATAAGAAATCTCAAACCACGTTTATAACGGCGGACGCTGCTAATTTCCGGCAGATGGTTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATAAGAAATCTCAAACCACGTTTATAACGGCGGACGCTGCTAATTTCCGGCAGATGGTTC 481
Query 539 AACAAGTCACCGGAGCTAAGTTCCTCGGTTCTTCCAACAGCATTTTCGCACCGATTGTGA 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGCAAGTCACCGGAGCTAAGTTCCTCGGTTCTTCCAACAGCATTTTCGCACCGATTGTGA 541
Query 599 AGCCGGAGCCACACCGTCTCGCTAGTAGATTACCACCGTCGTGCGGAAACTTGGACCGAT 658
|||||||||| || || |||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 542 AGCCGGAGCCGCATCGACTCGCTAGTAGACTACCACCGTCGTGCGGGAACTTGGATCGAT 601
Query 659 CTTCAGCTGTTCCAACGCTAGATACGTCGTCGTTTTTGTCTAACCATCACCAAGAGAACA 718
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTTCGGCTGTTCCGACGCTAGATACGTCGTCGTTTTTGTCTAACCATCACCAAGAGAACA 661
Query 719 TTATCACAGATTTGGG---------AGCTCCGACCGGTTCGTTTCATCATCAATCCAGTG 769
|||||||||||||||| |||||| | |||||||||||||||||| || ||||
Sbjct 662 TTATCACAGATTTGGGCTCTGTTTCAGCTCCTATCGGTTCGTTTCATCATCAGTCAAGTG 721
Query 770 CAGGTACAACGACGGCGAACGTTGGTGGTGGTAGCTCCGCCGTGGAATTGGATAGTTACC 829
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 CTGCTACAACGACGGCGAACGTTGGTGGTGG---CTCCGCCGTGGAATTGGATAGTTACC 778
Query 830 CGAGCTTCCCAACACTCGAATCATGGAAAGTTATGTGATCGATCTGATTTTAAGATTAGT 889
|||||||||||||||| |||||||||||||||||||||||||||| | ||| ||
Sbjct 779 CGAGCTTCCCAACACTTGAATCATGGAAAGTTATGTGATCGATCT-A------GAT--GT 829
Query 890 GTTTATGTAGAGATGTAATCCCTTTTGtttttttCCTTTGTGTTTCTCATTTTGTTATGA 949
|| | | | | |||| ||||| | || || |||||| |||||||||||
Sbjct 830 A---ATCT-----T-T--T---TTTTCTTTTT--C-TT-GTATTTCTC-TTTTGTTATGA 870
Query 950 AGAATCTTGTTTTAGTCCTTAAGCTTATGCAGCTATGGAGTCTCTTGTTCATACTTTTGG 1009
||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 871 AGAATCTTGTTTTCGTCCTTA-GCTTTTGCGGCTATGGAGTCTCTTGTTCATACTTTTGG 929
Query 1010 GGAAATCAAATGGTTTATTGGaaaaaaa 1037
||||||||||||||| || |||||||||
Sbjct 930 GGAAATCAAATGGTTAAT-GGAAAAAAA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5