BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56890.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938652 jgi|Araly1|938652|scaffold_502843.1 706 0.0
Ahg937176 jgi|Araly1|937176|scaffold_501367.1 291 6e-78
Ahg922208 jgi|Araly1|922208|scaffold_103489.1 145 5e-34
Ahg922179 jgi|Araly1|922179|scaffold_103460.1 139 2e-32
Ahg343684 jgi|Araly1|343684|fgenesh1_pg.C_scaffold_4000026 135 3e-31
Ahg936067 jgi|Araly1|936067|scaffold_500258.1 130 1e-29
Ahg936741 jgi|Araly1|936741|scaffold_500932.1 124 6e-28
Ahg936065 jgi|Araly1|936065|scaffold_500256.1 124 6e-28
Ahg346781 jgi|Araly1|346781|fgenesh1_pg.C_scaffold_5000173 117 1e-25
Ahg932494 jgi|Araly1|932494|scaffold_400482.1 115 4e-25
Ahg346783 jgi|Araly1|346783|fgenesh1_pg.C_scaffold_5000175 75.0 6e-13
> Ahg938652 jgi|Araly1|938652|scaffold_502843.1
Length=1075
Score = 706 bits (382), Expect = 0.0
Identities = 487/537 (91%), Gaps = 10/537 (2%)
Strand=Plus/Plus
Query 119 GCTCTGAGGAGTTCAAGTTTATTGA-GTCAGAATGCTTAGATGATCATATAGAGGACCCT 177
||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| |||
Sbjct 440 GCTCTGAGGAGTTCAAGTTTATTGACG-CAGCATGCTTTGATGATCATATAGAGGATCCT 498
Query 178 AGTGGATTAAGTTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAGTGCAACT-ATGT 236
| |||||| || ||||||||||||||||||||||||| ||||||||| ||||| | ||||
Sbjct 499 ACTGGATTGAGGTTGGTCAACTATATGGGTAAATTAGGTGTGACTAATTGCAA-TAATGT 557
Query 237 TGACGTTGGTGGAAGACGTTCCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAA 296
||||| ||||||||||||| | |||||||||||| ||||||||||||||||||| |||||
Sbjct 558 TGACGCTGGTGGAAGACGTACAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAA 617
Query 297 ACAGGAATGGGTCAAGTATGTCTACACTTTACCGGAGAATGAAGTCCTTGGTTCCTGCGA 356
|||||| ||||| || |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 618 ACAGGATTGGGTGAAATATGTCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCGA 677
Query 357 GTTTTCAGTTGCTGGAGTGACTGCAAGAGGCGATATTGTTTTGTGTATGAAGTATACATG 416
||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 678 ATTTTCAGTTGCTGGAGTGACTGCAACAGGGGATATTGTCTTGTGTATGAAATATACATG 737
Query 417 TAAACCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAAT 476
||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 738 TAAACCGTACTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAAT 797
Query 477 CCAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAG-CATCGTGGTGAAGTTTATGCCTTTG 535
|||||||||||||||| ||||||||| ||||||| | ||||||||||||||||| |||||
Sbjct 798 CCAAGGTTTTGGAGCTGAGCTTGAAGCGGTTGAGAC-TCGTGGTGAAGTTTATGGCTTTG 856
Query 536 TTGACTATGTTGAGGATCTTAGTCTAAACGATGCAAAGCAATTCAAGTCAAGCATTTCTC 595
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 857 TTGACTATGTAGAGGATCTTAGTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTCTC 916
Query 596 ATATCAAGAGC-CGCTGTTACTGCTGTGAA-ACGTTATGTCCTGACAACGTAGGGGA 650
|| |||||| | ||||| | ||||||| || ||||||| |||||||||| | |||||
Sbjct 917 ATGTCAAGA-CTCGCTGCTCCTGCTGT-AACACGTTATATCCTGACAACATCGGGGA 971
> Ahg937176 jgi|Araly1|937176|scaffold_501367.1
Length=1064
Score = 291 bits (157), Expect = 6e-78
Identities = 331/414 (80%), Gaps = 15/414 (4%)
Strand=Plus/Plus
Query 189 TTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAGTGCAACTATGTTG---ACGTTGG 245
|||||| ||||||| ||||||||||| || || | | || || ||||||| ||| ||
Sbjct 537 TTTGGTTAACTATAAGGGTAAATTAGGTGCGATTGATTGGAAGTATGTTGCTAACGATGC 596
Query 246 TG--GAA-GACGT-TCCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGG 301
|| ||| | ||| | | |||||||| | ||||| |||||||||||||| |||||| | |
Sbjct 597 TGATGAACGGCGTAT-CATTGAGTTGCGCTTGTGTGTTCTAGAGGATGTCGAGAAAAATG 655
Query 302 AATGGGTCAAGTATGTCTACACTTTACCGGAGAATGAAGTCCTTGGTTCCTGCGA-G--T 358
||||| | || |||| ||||| || ||||||||||||||| ||| ||| ||||| | |
Sbjct 656 AATGGTTGAAACATGTGTACACCTTGCCGGAGAATGAAGTCTTTGATTCATGCGATGATT 715
Query 359 TTTCAGTTGCTGGAGTGACT-GCAAGAGGCGATATTGTTTTGTGTATGAAGTATACATGT 417
|||||||||||||||| ||| | ||| ||||| ||||||| |||||| || |||
Sbjct 716 TTTCAGTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGT 774
Query 418 AAACCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATC 477
||||| | ||||| ||||||||| ||||||||| ||| || || |||||||||||||||
Sbjct 775 AAACCTTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATC 834
Query 478 CAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCATCGTGGTGA-AGTTTATGCCTTTGT 536
||||||||||||||||| ||||||| |||| ||| |||| | ||| |||||||||||
Sbjct 835 CAAGGTTTTGGAGCTAACCTTGAAGCCCCTGAGAATCATGGT-ACAGTGTATGCCTTTGT 893
Query 537 TGACTATGTTGAGGATCTTAGTCTAAACGATGCAAAGCAATTCAAGTCAAGCAT 590
||| |||| |||||||| ||| | |||||||||||| |||||||||||||
Sbjct 894 CGACCATGTAGAGGATCTCAGTGTTTGTGATGCAAAGCAACTCAAGTCAAGCAT 947
> Ahg922208 jgi|Araly1|922208|scaffold_103489.1
Length=883
Score = 145 bits (78), Expect = 5e-34
Identities = 188/238 (79%), Gaps = 20/238 (8%)
Strand=Plus/Plus
Query 263 AGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTC-TA 320
||||| |||||||||||||||||||||||||||||||||||||| || || ||| || ||
Sbjct 556 AGTTGAGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGG-TCGAATTAT-TCCTA 613
Query 321 CACTTTACCGGAG---AATGAA-GTCCTTGGTTC-CTGCGAGT-TTTCAGTTGCTGG-AG 373
| | | | |||| || ||| || || | |||| | | |||| |||| ||| |
Sbjct 614 C--TGT-CTGGAGGTTAA-GAATGTTAA-GGCTAACTGCAA-TCTTTCTGTTGTTGGGA- 666
Query 374 TGACTGCAAGAGGCGATATTGTTTTGTGT-ATGAAGTATACATGTAAACCGTACTATGTA 432
|||| || ||||| || ||||||||| || | | || || ||| |||||||| |||||
Sbjct 667 TGACGGCTAGAGGTGAAATTGTTTTG-GTTAAGGAGGATGCATTTAAACCGTTTTATGTT 725
Query 433 TTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTGGAG 490
|||||||| ||||||||| ||| || |||||||||||||||||||||||| ||||||
Sbjct 726 TTCTACTTTAATCCCGAAAGGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTGGAG 783
> Ahg922179 jgi|Araly1|922179|scaffold_103460.1
Length=2001
Score = 139 bits (75), Expect = 2e-32
Identities = 314/420 (75%), Gaps = 54/420 (13%)
Strand=Plus/Plus
Query 196 AACTATATGGGTAAATTAGCTGTGACTAA-GTGCAACTATGTTGACGTTGGTGGAAG--- 251
||||||| ||||||||||| |||| ||| || || ||||||| | |||| |||
Sbjct 1452 AACTATAAGGGTAAATTAGGTGTGGTTAATTTG-AAGAATGTTGATGATGGTACAAGTTT 1510
Query 252 -A--CGTTCCGTTGAGTTGT-GTTTGTGGGTTCTAGAGGATGTTGAGAAACA-GGAATGG 306
| | | || ||||||| | || |||||||||| ||| ||||||||||| | ||||| |
Sbjct 1511 TAGGCATACCCTTGAGTT-TCGTATGTGGGTTCTGGAGCATGTTGAGAAA-ATGGAAT-G 1567
Query 307 GTC--AAGTATGTCTACACTTTACCGG--AG-AATGAAGTC--CTTG--GTTCCTGCGAG 357
||| || |||||||||||||| || || ||||||| | | || | || || |
Sbjct 1568 GTCGGAA-TATGTCTACACTTTGTTGGATAGTAATGAAG-CAGC-TGATGATCTTG-TTG 1623
Query 358 TT-TTC-AGTTGCTG--GAG-TGACTGCAAGAGGCGATATTGTTTTGT-GTATGA-AGTA 410
|| || |||| || | | ||||||| | || |||||| |||||| | | || || |
Sbjct 1624 TTGATCTTGTTGTTGTCGGGATGACTGCTACTGGTGATATTATTTTGTCG-AAGATAG-A 1681
Query 411 TACATGTAAACCGTA-CTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTG 469
||||||| ||||| | ||||| || | |||| ||||||||| |||||| |||||||||
Sbjct 1682 TACATGTGAACCG-ATTTATGTTTTTTTCTTCAATCCCGAAAGGAAAACTTTCCAAAGTG 1740
Query 470 TTGAAATCCAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCATCGTGGTGAAGTTTATG 529
||||||||||||||||||||||||| | ||| ||| || | | |||||
Sbjct 1741 TTGAAATCCAAGGTTTTGGAGCTAATCGTGA-----TTG--CA--G-----A-GTTTACC 1785
Query 530 CCTTTGTTGACTATGTTGAGGATCTTAGTCT-AAACGATGCAAAGCAATTCAAGTCAAGC 588
||||||| |||||||| || |||||||| || |||| ||||||||||| |||||||||||
Sbjct 1786 CCTTTGTAGACTATGTAGATGATCTTAG-CTTAAACCATGCAAAGCAACTCAAGTCAAGC 1844
> Ahg343684 jgi|Araly1|343684|fgenesh1_pg.C_scaffold_4000026
Length=1308
Score = 135 bits (73), Expect = 3e-31
Identities = 186/238 (78%), Gaps = 17/238 (7%)
Strand=Plus/Plus
Query 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
||||||| |||||||| ||||||||||||||||||||||||||||| || || |||| ||
Sbjct 963 TGAGTTGCGTTTGTGGATTCTAGAGGATGTTGAGAAACAGGAATGG-TCGAAATATGCCT 1021
Query 320 ACACTTT-ACCGGA-GAATGAAGTCCTTGGTTCCTGCGAGTTTTCAGTTGCTGGAGTGAC 377
|||||| | || | || | || || || || | | |||| || ||| |||||||||
Sbjct 1022 ACACTTGGAGCG-ATGA-TAAATTC-TTCCATCGT-CTTGTTTCCA-TTGGTGGAGTGAC 1076
Query 378 TGCAA-GAG-GCGATATTGTTTT-GTGTATG-AAGTATACATGTA-A-A-CCGTACTATG 430
||| | | | |||| |||||| | || | ||||||||| || | | |||| ||||
Sbjct 1077 TGCTTCGGGTGAGATAGTGTTTTCGA-TACGCAAGTATACACCTACACAACCGTTTTATG 1135
Query 431 TATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTGG 488
| || |||||| ||||||||| ||| || || ||| ||||||||||||||||||||||
Sbjct 1136 TTTTTTACTTCAATCCCGAAAGGAACACTCTGCAACGTGTTGAAATCCAAGGTTTTGG 1193
> Ahg936067 jgi|Araly1|936067|scaffold_500258.1
Length=1140
Score = 130 bits (70), Expect = 1e-29
Identities = 188/241 (78%), Gaps = 23/241 (10%)
Strand=Plus/Plus
Query 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
||||||| || ||||||||||||||||||||||||||||| ||||| || || |||| ||
Sbjct 694 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGG-TCTAAATATGCCT 752
Query 320 ACACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGAGTTTTC-AGTTGCTGGAGT 374
|||||| |||| | || | | | || || || | | | | |||| | | |||||||
Sbjct 753 ACACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ACCTTTCCA-TCGCTGGAGC 804
Query 375 GACTGCAAGAGGCGATATTGT-TTTGTGTATG---AAGTATACATGTAAAC--C-GTACT 427
||||| ||| || || || ||| | ||| |||||||||||||||| | || |
Sbjct 805 CACTGCTTCAGGTGAAATAGTGTTT-TCCATGCGCAAGTATACATGTAAACAACCGTTTT 863
Query 428 ATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTG 487
|||| ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||||
Sbjct 864 ATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTG 923
Query 488 G 488
|
Sbjct 924 G 924
> Ahg936741 jgi|Araly1|936741|scaffold_500932.1
Length=617
Score = 124 bits (67), Expect = 6e-28
Identities = 189/243 (78%), Gaps = 27/243 (11%)
Strand=Plus/Plus
Query 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
||||||| | ||||||||||||||||||||||||||||||||||| || || |||| ||
Sbjct 219 TGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGG-TCTAAATATGCCT 277
Query 320 ACACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGA-GTTTTCAGTTGCTGGAGT 374
|||||| |||| | || | | | || || || | | | | |||| || | |||||||
Sbjct 278 ACACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ATGTTTCCA-TCGCTGGAGC 329
Query 375 GACTGCAA-GAGGCGATATTGT-TTTGT-GTATG---AAGTATACATGTAAAC--C-GTA 425
|||| | | || || || || ||| | | ||| |||||||||| ||||| | ||
Sbjct 330 GACTCCTTTG-GGTGAAATAGTATTT-TCG-ATGCGCAAGTATACATCTAAACAACCGTT 386
Query 426 CTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTT 485
||||| ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||
Sbjct 387 TTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTT 446
Query 486 TGG 488
|||
Sbjct 447 TGG 449
> Ahg936065 jgi|Araly1|936065|scaffold_500256.1
Length=1293
Score = 124 bits (67), Expect = 6e-28
Identities = 189/243 (78%), Gaps = 27/243 (11%)
Strand=Plus/Plus
Query 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
||||||| || |||||||||||||||||||||||||||| |||||| || || |||| ||
Sbjct 832 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACATGAATGG-TCGAAATATGCCT 890
Query 320 ACACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGA-GTTTTCAGTTGCTGGAGT 374
|||||| |||| | || | | | || || || | | | | |||| || | |||||||
Sbjct 891 ACACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ATGTTTCCA-TCGCTGGAGC 942
Query 375 GACTGCAA-GAGGCGATATTGT-TTTGT-GTATG---AAGTATACATGTAAAC--C-GTA 425
|||||| | || || || || ||| | | ||| |||||| ||| ||||| | ||
Sbjct 943 GACTGCTTCG-GGTGAAATAGTATTT-TCG-ATGCGCAAGTATTCATCTAAACAACCGTT 999
Query 426 CTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTT 485
||||| ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||
Sbjct 1000 TTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTT 1059
Query 486 TGG 488
|||
Sbjct 1060 TGG 1062
> Ahg346781 jgi|Araly1|346781|fgenesh1_pg.C_scaffold_5000173
Length=627
Score = 117 bits (63), Expect = 1e-25
Identities = 186/241 (77%), Gaps = 25/241 (10%)
Strand=Plus/Plus
Query 262 GAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCTA 320
|||||| || ||||||||||||||||||||||||||||| ||||| || || |||| |||
Sbjct 256 GAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGG-TCTAAATATGCCTA 314
Query 321 CACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGAGTTTTC-AGTTGCTGGAGTG 375
||||| |||| | || | | | || || || | | | | |||| | | |||||||
Sbjct 315 CACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ACCTTTCTA-TCGCTGGAGCC 366
Query 376 ACTGCAA-GAGGCGATATTGT-TTTGTGTATG---AAGTATACATGTAAAC--C-GTACT 427
||||| | || || || || ||| | ||| ||||||||| ||||| | || |
Sbjct 367 ACTGCTTCG-GGTGAAATAGTGTTT-TCCATGCGCAAGTATACACCTAAACAACCGTTTT 424
Query 428 ATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTG 487
|||| ||||||||| ||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 425 ATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTG 484
Query 488 G 488
|
Sbjct 485 G 485
> Ahg932494 jgi|Araly1|932494|scaffold_400482.1
Length=982
Score = 115 bits (62), Expect = 4e-25
Identities = 301/408 (74%), Gaps = 49/408 (12%)
Strand=Plus/Plus
Query 189 TTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAG-TGCAACTATG-TTGACGTTGGT 246
|||| | ||||| | ||||||||||| || || | || | || |||| ||| | ||||
Sbjct 362 TTTGATAAACTACAAGGGTAAATTAGGTGGGA-TTAGTTTAAAGTATGCTTG-TGATGGT 419
Query 247 GGAAGACGTT-CCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATG 305
| || || || ||||||| | | |||||||||||||||||||||||||||| |||||
Sbjct 420 -G--GA-TTTCCCCTTGAGTTATCTATGTGGGTTCTAGAGGATGTTGAGAAACATGAATG 475
Query 306 GGTC-AAGTATGTCTACACTTTACCGG---AGAATGAAGTCCTT--GGTTCCTGCG-AGT 358
| || || || ||||||||||| | || ||||| ||||| || |||| | | |
Sbjct 476 G-TCTAAATACGTCTACACTTTGCGGGCTGAGAATAAAGTCGTTAAGGTTAA-GAATAAT 533
Query 359 -TTTCAGTTGCTGG-AGTGACTGCAAGAGGCGATATTGTTTTGT-GTA---TGAA-GTA- 410
|||| |||| ||| | |||||| ||||| || |||||||||| | | | || |||
Sbjct 534 CTTTCTGTTGTTGGGAC-GACTGCTAGAGGTGAAATTGTTTTGTCGAAGAATAAAAGTAA 592
Query 411 TA-CAT----G----TA--AA-CCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAAC 458
|| ||| | || || |||| ||||| ||||||||| ||||||||||||| ||
Sbjct 593 TATCATCATAGACACTATTAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAACAC 652
Query 459 CCTCCAAAGTGTTGAAATCCAAGGTTTTGGAGCTAA-GCT-TGAAGAGGTTGA-GCATCG 515
|| | ||||||||||||||||| |||||||| || || |||| |||| | | ||
Sbjct 653 TCTACTAAGTGTTGAAATCCAAGATTTTGGAG--AACGCCATGAAT-GGTTTATGGGTCA 709
Query 516 TGGTGAAGTTTATGCCTTTGTTGACTATGTTGAGGATCTTA-GTCTAA 562
| ||||||| || ||||| ||| ||||||||||||||| || |||
Sbjct 710 TA---AAGTTTACGCTTTTGTAGACCATGTTGAGGATCTTAAGTTTAA 754
> Ahg346783 jgi|Araly1|346783|fgenesh1_pg.C_scaffold_5000175
Length=1287
Score = 75.0 bits (40), Expect = 6e-13
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 262 GAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCTA 320
|||||| |||||||||||||||||||||||||||| || ||||| || || |||| |||
Sbjct 865 GAGTTGCATTTGTGGGTTCTAGAGGATGTTGAGAAAAAGAAATGG-TCTAAATATGCCTA 923
Query 321 CACTT 325
|||||
Sbjct 924 CACTT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5