BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56891.1 Length=501 Score E Sequences producing significant alignments: (Bits) Value Ahg324196 jgi|Araly1|324196|fgenesh1_pm.C_scaffold_5001740 715 0.0 > Ahg324196 jgi|Araly1|324196|fgenesh1_pm.C_scaffold_5001740 Length=513 Score = 715 bits (387), Expect = 0.0 Identities = 474/514 (92%), Gaps = 14/514 (3%) Strand=Plus/Plus Query 1 ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATCGCTTTATCTATTGTGGAGCTT 60 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1 ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATAGCCTTATCTATTGTGGAGCTT 60 Query 61 TTGGTAGACATGGATTGTAAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCTAAACTC 120 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TTGGTAGACATGGATTGTCAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCCAAACTC 120 Query 121 GATGGAGTGGACACGGTAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACGGGATAC 180 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 GATGGAGTGGACACGATAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACAGGATAC 180 Query 181 GTTGATCGAGAAGAGGTTCTAAAGATGGTGAAACGAACGGGACGAACAGCGGAATAT-TG 239 |||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||| | || Sbjct 181 GTTGATAGAGAAGAGGTTCTAAAAATGGTTAAACAAACAGGACGAACAGCGGAAT-TCTG 239 Query 240 GCCATTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA 299 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCCTTTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA 299 Query 300 ACAATCGGATCAGAAGATATATCA-G-ACAA--T-CT----CATATAGTGGAAAGTATGA 350 |||||| |||||||||||||||| | | || | || |||||| ||||||||| || Sbjct 300 ACAATCCAATCAGAAGATATATCAAGCAGAAAATACTTTTTCATATAATGGAAAGTACGA 359 Query 351 TTTCTATGACGTTGACGACTTTCAAAATACAAACAACTCTACTATCAATGGTTATTATCC 410 |||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| Sbjct 360 TTTCTATGACGTCGACGACTTTCAAAATACGAACAACTCTTCTATCAACGGTTATTATCT 419 Query 411 TAGTTCATCCCAAAAAGTTCAACCTAATA-T--CGATGAAAATGCTCTTCATCTTTTTAG 467 | || |||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 420 TCGTCCATCCCAAAAAGTTCAACCTAATACTATCGATGAAAATGCTCTTCATCTTTTTAG 479 Query 468 CGATGATAATGCTCATGCTTGTACTATCATGTGA 501 |||||||||||| |||||||||| |||||||||| Sbjct 480 CGATGATAATGCACATGCTTGTATTATCATGTGA 513 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18200215953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5