BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G56891.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324196 jgi|Araly1|324196|fgenesh1_pm.C_scaffold_5001740           715    0.0  


> Ahg324196 jgi|Araly1|324196|fgenesh1_pm.C_scaffold_5001740
Length=513

 Score =  715 bits (387),  Expect = 0.0
 Identities = 474/514 (92%), Gaps = 14/514 (3%)
 Strand=Plus/Plus

Query  1    ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATCGCTTTATCTATTGTGGAGCTT  60
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  1    ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATAGCCTTATCTATTGTGGAGCTT  60

Query  61   TTGGTAGACATGGATTGTAAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCTAAACTC  120
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   TTGGTAGACATGGATTGTCAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCCAAACTC  120

Query  121  GATGGAGTGGACACGGTAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACGGGATAC  180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GATGGAGTGGACACGATAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACAGGATAC  180

Query  181  GTTGATCGAGAAGAGGTTCTAAAGATGGTGAAACGAACGGGACGAACAGCGGAATAT-TG  239
            |||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||| | ||
Sbjct  181  GTTGATAGAGAAGAGGTTCTAAAAATGGTTAAACAAACAGGACGAACAGCGGAAT-TCTG  239

Query  240  GCCATTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA  299
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GCCTTTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA  299

Query  300  ACAATCGGATCAGAAGATATATCA-G-ACAA--T-CT----CATATAGTGGAAAGTATGA  350
            ||||||  |||||||||||||||| | | ||  | ||    |||||| ||||||||| ||
Sbjct  300  ACAATCCAATCAGAAGATATATCAAGCAGAAAATACTTTTTCATATAATGGAAAGTACGA  359

Query  351  TTTCTATGACGTTGACGACTTTCAAAATACAAACAACTCTACTATCAATGGTTATTATCC  410
            |||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| 
Sbjct  360  TTTCTATGACGTCGACGACTTTCAAAATACGAACAACTCTTCTATCAACGGTTATTATCT  419

Query  411  TAGTTCATCCCAAAAAGTTCAACCTAATA-T--CGATGAAAATGCTCTTCATCTTTTTAG  467
            | || |||||||||||||||||||||||| |  |||||||||||||||||||||||||||
Sbjct  420  TCGTCCATCCCAAAAAGTTCAACCTAATACTATCGATGAAAATGCTCTTCATCTTTTTAG  479

Query  468  CGATGATAATGCTCATGCTTGTACTATCATGTGA  501
            |||||||||||| |||||||||| ||||||||||
Sbjct  480  CGATGATAATGCACATGCTTGTATTATCATGTGA  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5