BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56900.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486131 jgi|Araly1|486131|fgenesh2_kg.5__2123__AT3G56900.1 2449 0.0
Ahg486132 jgi|Araly1|486132|fgenesh2_kg.5__2124__AT3G56910.1 71.3 2e-11
> Ahg486131 jgi|Araly1|486131|fgenesh2_kg.5__2123__AT3G56900.1
Length=1598
Score = 2449 bits (1326), Expect = 0.0
Identities = 1442/1495 (96%), Gaps = 20/1495 (1%)
Strand=Plus/Plus
Query 197 AAAAGGGACAATGGCATCTTTTCCTCATCCCGGTTCCGTCACCGTCTGCGAGATCAACAG 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAAAGGGACAATGGCATCTTTTCCTCATCCCGGTTCCGTCACCGTCTGCGAGATCAACAG 182
Query 257 AGACTTGATTACGGCTCAGAACTTATCTGATGAGCGAGCTCAGGAGACTTATGGAAAAGT 316
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 183 AGACTTGATTACGGCTCAGAACTTGTCTGATGAGCGAGCTCTGGAGACATATGGAAAAGT 242
Query 317 TCTTGGAATGGTGTTTAGCCCTGTTTCGTTCGACTCTACTCCTAGCTCTCTTCAGGAAAA 376
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 TCTTGGAATGGTGTTTAGCCCTGTTTCGTTCGACTCTACACCTAGCTCTCTTCAGGAAAA 302
Query 377 TGAAGGACAAGAGAATGGAGATAAGGCAAGTGGTGAGAGTAAAGGACTGGTTGCAACACT 436
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 303 TGAAGGACAAGAGAATGGAGATAAGGCAAGTGTTGAGAGTAAAGGACTGGTGGCAACACT 362
Query 437 GCAGATGAAGGTTGCAGAC-TCTCTTAAACAGATTTTACAACCCACCGATGTAACTCTAC 495
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 363 TCAGATGAAGGTTTCAGACAT-TCTTAAACAGATTTTACAACCCACCGATGTAACTCTCC 421
Query 496 TCTCAGAGATTGATCTTCAAGGAGTGAGTTGGCATCAAGGGAAGCATATTATTGCCTTTA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTCAGAGATTGATCTTCAAGGAGTGAGTTGGCATCAAGGGAAGCATATTATTGCCTTTA 481
Query 556 TATCCGGTGCAAATCAAGTTACAATTCGTGATTATGAGGACAAAGATGAGAAAGAACCTT 615
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 482 TATCTGGTGCAAATCAAGTTACAATTCGTGATTATGACGACAAAGATGAGAAGGAACCTT 541
Query 616 GCATTTTGACAAGTGATTCACAAAGAAATGTTAAAGCCCTTGAGTGGAGACCAAATGGTG 675
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 542 GCATTTTGACAAGTGATTCACAGAGAAGTGTTAAAGCCCTTGAGTGGAGACCAAATGGTG 601
Query 676 GAAAATCCCTATCCATTGCCTGTCGGGGAGGAATATGCATATGGGCTGCTTCATATCCGG 735
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 602 GAAAATCCCTATCCGTAGCCTGTCGGGGAGGAATATGCATATGGGCTGCTTCCTATCCAG 661
Query 736 GTAACATGGCATTGGTTAGATCTGGTGGTTCCGCATTGAGGGGAAGTCTCTCTCGAGGAT 795
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 662 GTAACATGGCATTGGTTAGATCCGGTGGTTCCGCGTTGAGGGGAAGTCTCTCTCGAGGAT 721
Query 796 CTGGAACTCGTTGGATTTTGGTGGACTTTCTTCGGTGTCAAAATGATGAGCAAATTAGTG 855
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 CTGGAACTCGCTGGATTTTGGTTGACTTTCTTCGGTGTCAAAATGATGAGCAAATTAGTG 781
Query 856 CTCTCTCATGGAGCCCCTGTGGAAGGTATTTAGCATCAGCCTCATATGACAGTTCATCTT 915
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 782 CTCTCTCATGGAGCCCCTGTGGAAGATATTTAGCATCAGCCTCATATGACAGCTCATCTT 841
Query 916 TCACCATATGGGATGTTTCTCAAGGGGCAGGGACACCTATTAGACGGGGACTAGGTGGAA 975
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 842 TCACCATATGGGATGTTTCTCAAGGGGCGGGGACACCTATTAGACGGGGACTAGGTGGAA 901
Query 976 TATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATTTGATGGGA 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATTTGATGGGA 961
Query 1036 CTTTTTGTCTTTGGGAAACAAACACATGGACATCTGAACCCTGGTCTTTGTCTAGTGGAT 1095
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 962 CTTTTTGTCTTTGGGAAACAAACACATGGACATCTGAGCCCTGGTCTTTGTCTAGTGGAT 1021
Query 1096 CTGGATCTGTCACGGGAGCGATATGGGATCCCGAAGGACGGTTTATCTTGATTTCGTTTT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CTGGATCTGTCACGGGAGCGATATGGGATCCCGAAGGACGGTTTATCTTGATTTCGTTTT 1081
Query 1156 CGAAATCTTCAACACTGGGCTCTGTTCATTTCTCATCCAAGCCACCATCCTTGGATGCCC 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CGAAATCTTCAACACTGGGCTCTGTTCATTTCTCATCCAAGCCACCATCCTTGGATGCCC 1141
Query 1216 ATCTATTACCAGTTGAATTGCCAGAGATTGCTTCTCTAACTGGCTGTGAGGGCATCGAGA 1275
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1142 ATCTATTACCAGTTGAATTGCCAGAGATTGCTTCTCTGACTGGCAGTGAGGGCATCGAGA 1201
Query 1276 AGATAGCATGGGATGCATCTGGAGAACGATTGGCTGTGTCGTACAAAGGAGGCGATGAAA 1335
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1202 AGATAGCATGGGATGCATCTGGAGAACGATTGGCTGTGTCATACAAAGGAGGCGATGAAA 1261
Query 1336 ATTACAAAGGATTGATTGCCATCTACGACACACGAAGGACACCTATTGTATCAGCATCAC 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 ATTACAAAGGATTGATTGCCATCTACGACACACGAAGGACACCTATTGTATCAGCATCAC 1321
Query 1396 TAGTCGGTTTCATCAGAGGACCTGGAGAAAACCCGAAAGCTCTCTCCTTTTCATTCCATG 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TAGTCGGTTTCATCAGAGGACCTGGAGAAAACCCGAAAGCTCTCTCCTTTTCATTCCATG 1381
Query 1456 ACAAGTTCAAGCAAGGTCCACTCCTTTCTGTGTGTTGGAGCACCGGATTCTGTTGCACCT 1515
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1382 ACAAGTTCAAGCAAGGTCCACTCCTTTCCGTGTGTTGGAGCACCGGATTCTGTTGCACCT 1441
Query 1516 ATCCTCTCATCTTCCGCTCACATGTTCTTCCTTAATAGCCAAATGGTTCAAATTTAATGC 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1442 ATCCTCTCATCTTCCGCTCACATGTTCTTCCTTAATAGCCAAATGGTTCAAATTCAATGC 1501
Query 1576 AAGTTTCAAACTTTTTGGTTCTATTTTGTAGACTGCTCACTCTTTGTATACAAATGGTTT 1635
||||||||||||||| ||||||||||||||||||||||||||||| | || || |
Sbjct 1502 AAGTTTCAAACTTTTGGGTTCTATTTTGTAGACTGCTCACTCTTT-T-TA-AA--G---- 1552
Query 1636 CTTTAAAGAACTCAGCTTTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1690
|| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1553 ----AA----CTCAGATT-GAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1598
Score = 159 bits (86), Expect = 5e-38
Identities = 110/122 (90%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 7 CATCGTTCAAAATCAAAACCCCTAAACTCAAATTCTCTCTCCGTTTTTCCGGTGAAAATC 66
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 CATTGTTCAAAATCAAAACCCCTAAACTCAAATCCTCTCTCCGTTTTTCCGGCGAAAATC 60
Query 67 AGTCGCCGTTCTCCGGCCACAGTCTACACTAACCGTGTCATTTCGAGTCTCATCAAACCT 126
||||||||||||||| ||| |||||| || ||||||| |||| ||||| |||||||||
Sbjct 61 CGTCGCCGTTCTCCGGTCACTGTCTACTCTCACCGTGTGATTTATAGTCTAATCAAACCT 120
Query 127 TT 128
||
Sbjct 121 TT 122
> Ahg486132 jgi|Araly1|486132|fgenesh2_kg.5__2124__AT3G56910.1
Length=657
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1653 TTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1690
||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5