BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56920.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938656 jgi|Araly1|938656|scaffold_502847.1 1664 0.0
> Ahg938656 jgi|Araly1|938656|scaffold_502847.1
Length=1057
Score = 1664 bits (901), Expect = 0.0
Identities = 1006/1058 (95%), Gaps = 2/1058 (0%)
Strand=Plus/Plus
Query 167 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCTTGAACGACAAAGGATCTATCAAG 226
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCCTGAACGAAAAAGGATCTATCAAG 60
Query 227 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 120
Query 287 CGTCACTTCTTTTGACCACATGTATGATAGGAGGGCCAGCTATCGCTTTCTCCATCAGGA 346
|||| ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||
Sbjct 121 CGTCGCTTCTTTTGACCACATGTATGATTGGAGGACCAGCTATCACTTTCTGCATCAGGA 180
Query 347 TGGCTTATTTGATAAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATTGGTGCAA 406
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TGGCTTATTTGATCAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATCGGTGCAA 240
Query 407 TTCTTCTCACATTCATGGCTTTCACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 466
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTTCTCACATTCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 300
Query 467 TTATCCCAAGGAACAAACAAGTGTCTGAGGCAGAGATTCCTGATGTTACCACCCAATCGA 526
||||||||||||||||| ||||| ||||||||||||||||| |||| | |||||||||||
Sbjct 301 TTATCCCAAGGAACAAAGAAGTGCCTGAGGCAGAGATTCCTCATGTCATCACCCAATCGA 360
Query 527 CAGAATGGGTGACTAGCAAATTAGGAAGTGTGAAACTACCTCGAACAAAAGATGTAATGG 586
||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 361 CAGAATGGGTGACTAACAAATTAGGAAATATGAAATTACCTCGAACAAAAGATGTAATGG 420
Query 587 TGAATGGCTTCACTGTCAAAGTGAAGTTTTGCGATACCTGTCAGCTATATCGTCCTCCTC 646
||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 421 TGAATGGCTTCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTC 480
Query 647 GTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTT 706
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 481 GTGCCTTTCACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCAT 540
Query 707 GGGTTGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 766
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGTAGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 600
Query 767 CAACACTCCTCTGCATCTACGT-TTTCGTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 825
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 601 CAACACTCCTCTGCATCTATGTCTTT-GTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 659
Query 826 GGGGAATTCTATGTTGTTCTCGCTGATGACTTAATATTAGGTGTTCTTGGTCTCTACTGC 885
||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GGGGAATTCTATGCTGTCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGC 719
Query 886 TTTGTTTCCGTTTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 945
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGTTTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 779
Query 946 AACCAGACGACTTGTGAGAATTTTCGGTACCATTACGACAAGAAGGAAAACCCTTACCGA 1005
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 780 AACCAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGA 839
Query 1006 AAGGGGATCTTAGAGAACTTCAAGGAGCTATTCTTTGCAAAAATTCCACCACCTTTGATC 1065
|||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||| |
Sbjct 840 AAGGGGATCTTAGAGAACTTCAAGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACC 899
Query 1066 AATTTCAGAGATTGGTCGCCAGAAGAAGAAGACGATGTGGAGGTTGGATCCATAGCCTCT 1125
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 AATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCT 959
Query 1126 GAGCTAGTCAGAGCCTTTGGTCCAAAAGACACGAAAATGAGCAGTGGAAAGTCTGATTCC 1185
||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 960 GAGCTAGGCAGAAACTTTGGTCTAAAAGACACGAAAATGAGCAGTGGCAAGTCTGATTCC 1019
Query 1186 GAAGCTAGAGAACGGTAACAACGGTGGCACGGCTGTCA 1223
|||||||||||||||||||||| |||||||||||||||
Sbjct 1020 GAAGCTAGAGAACGGTAACAACAGTGGCACGGCTGTCA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5