BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56930.1
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486136 jgi|Araly1|486136|fgenesh2_kg.5__2128__AT3G56930.1 2898 0.0
Ahg945637 jgi|Araly1|945637|scaffold_701866.1 122 7e-27
> Ahg486136 jgi|Araly1|486136|fgenesh2_kg.5__2128__AT3G56930.1
Length=2007
Score = 2898 bits (1569), Expect = 0.0
Identities = 1903/2050 (93%), Gaps = 80/2050 (4%)
Strand=Plus/Plus
Query 37 TTCGAGTGAGAGAGACGACAGCTTCCATTATCCCCTGTCTCTCTCCCTCTCGAACTACAA 96
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 25 TTCGAGTGAGAGAGACGACAGCTTCCATT-TTCCTTGTCTCTCTCCCTCTCGAACTACAA 83
Query 97 ATCAAATTCGAGTGTTTTCATATTGTTAATCTTTTTCTTCAAGGAAAGAAGAGATTTTGT 156
||||||| |||||| ||| | |||||||||| | || |||||||||
Sbjct 84 ATCAAATCCGAGTG-TTTGAAATTGTTAATC----T-TT------------AGATTTTGT 125
Query 157 TTTCCGTTTCTGGGGGTTTTTCTTGATTCTGATCTCTGATCTGATCTCATCATCATTGTC 216
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 126 TTTCCGTTTCTGGGGGTTTTTCTTGATTTTGATCTCTGATCTGATCTGATCATCATTGTC 185
Query 217 CGTGGATTCTCCGATGGGTTTCTGATTGTGGGttctttcaaatttcttcacttttggagc 276
| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 186 CATGGATTCTCCGATGGGTTTCTGATTCTGGGTTCTTCCAAATTTCTTCACTTCTGGAG- 244
Query 277 ttttcttctctctgtcttttgttttcCCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 336
|| | | || || ||||||||||||||||||||||||||||||||||
Sbjct 245 -------CT-T-T-TC-------TT-CCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 286
Query 337 GAGGCTCTATCAAGTTTGGAGAGGAAGCAATAAATTTCTATGTGGCGGGAGGCTAATATT 396
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 287 GAGGCTCTATCAAGTTTGGAGGGGAAGCAATAAATTTCTATGTGGCGGGAGGTTAATCTT 346
Query 397 TGGTCCTGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCTGCTGTAAT 456
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 347 TGGTCCAGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCGGCCGTAAT 406
Query 457 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTATG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 407 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTCTG 466
Query 517 TATTCCAATTCTCTGTGTGTCTTGGATACTCACAATTTTGGATATATTTTTCCTCTTAAT 576
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 467 TATTCCAATTCTCTGTGTGTCTTGGATACTCACCATTTTGGATATATTTTTCCTCTTAAT 526
Query 577 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTTAGGCCTCCGGAAACCGATGA 636
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 527 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTAAGGCCTCCGGAAACAGATGA 586
Query 637 TGCACCGGATTCAACTACTCCATCGATGGAATGGGTTAGCGGTAGAACCCCTAATATAAG 696
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 587 TGCACCGGATTCAACTACTCCGTCGTTGGAATGGGTTAGCGGTAGAACCCCAAATATAAG 646
Query 697 AATACC-ACGGGTCAAAGATGTAACTGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 755
|||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 647 AATACCGA-GGGTTAAAGATGTAACCGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 705
Query 756 ACACTTGTTTGCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 815
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 706 ATACTTGTTTGCTTTACCGTCCTCCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 765
Query 816 TCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTACC 875
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 766 TCCAGAGATTCGATCATCACTGCCCTTGGGTTGGCCAGTGTATTGGAGTGCGAAATTACC 825
Query 876 GGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTT 935
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 826 GGTTCTTCTTCATGTTCATATCAACATCTACCACTTTGTGCATATATGTGTTTGCTTTTT 885
Query 936 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 945
Query 996 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1005
Query 1056 GAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAG---ACGACTTATGAGA 1112
|||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 1006 GAGGACTCACTATATTTCATTCCTATCTCATCTGCACTAACCAGGTGACCACTTATGAGA 1065
Query 1113 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAAGGAATTTTGGGGAACA 1172
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1066 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAGGGAATTTTAGGGAACA 1125
Query 1173 TATGGGAAATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTCA 1232
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1126 TATGGGAGATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTGA 1185
Query 1233 AGGAAGAAGATTATATGATGATGATGGTTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1292
||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1186 AGGAAGAGGATTATATGATGATG--G-TTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1242
Query 1293 TAGTTAGCTCGAAAGAGAAGATTGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1352
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1243 TAGTCAGCTCGAAAGAGAAGATCGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1302
Query 1353 GTGGAAAGAGCTACTCTCTACCTGAGATTCTCCGGAATCTAAACTATGAAGATCTTGAGG 1412
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1303 GTGGAAAGAGCTACTCTCTGCCTGAGATCCTCCGGAATCTAAACTATGAAGATCTCGAGG 1362
Query 1413 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCACCATCACCATCAAC 1472
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1363 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCATCATCACCATCAAC 1422
Query 1473 ATCAACATAATGAGGGAATCATCCCTCCTTTTGACCCtttttttACCAATGAGATTGGTA 1532
|| || | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1423 AT-AA--T---GAGGGAATCATCCCTCCTTTTGACCCTTTTTTTACCAATGAGAATGGTA 1476
Query 1533 GTAACAAAGATGAGAGAAATGGAGAAGAATCAGGAGGATCTTCAAGTGATGGTGAAAATA 1592
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1477 GTAACAAAGATGAGAGAAATGCAGAAGAATCAGGAGGATCTTCAAGTGATGATGAAGATG 1536
Query 1593 CAGGGAAACGCGTTCGGGTCTCAGATGAAGATGAAGAGAAAGTTGAAGGGTATGAACGAA 1652
||||||||||||||||||| | || | |||||||||||||| ||||||||||||||||
Sbjct 1537 CAGGGAAACGCGTTCGGGT-T--GA--A-GATGAAGAGAAAGTGGAAGGGTATGAACGAA 1590
Query 1653 ATTGGAGTACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAGCAAGCTCTC 1712
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1591 ATTGGAATACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAACAAGCTCTC 1650
Query 1713 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1710
Query 1773 ATGGAGTTTGTGCTTTATCATTCTTTTAATTCTGTTTCATATAATTGTGGGaaaaaaaaT 1832
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1711 ATGGAGTTTGTGCTTTATCATTCTTTTAATTGTGTTTCATATAATTGTGG-AAAAAAAAT 1769
Query 1833 CCGAAAAATAACAATCATCTTAGAAAATT-G-TGAGTTTGAGCACTAGAtttttttattt 1890
|||| ||||||||||||| |||| | || | || ||||||||||||||||||||| |||
Sbjct 1770 CCGAGAAATAACAATCAT-TTAGGAC-TTCGATGGGTTTGAGCACTAGATTTTTTTTTTT 1827
Query 1891 ttAAAATTC-TCCTTTTTAGTTGTATTTATATATACCAGAATGG-TC-T--GGATATCAC 1945
|| || |||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 1828 TTTT--TTAATCCTTTTTAGTTGTATTTATATATACCAGAATGGCTCATCTGGATATCAC 1885
Query 1946 CAGCATCACATAttttctct-cttttttatttttcc-ttttttGTTATaaaaaaaGATTT 2003
|||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1886 CAGCATCACATATTTTATCTTCTTTTTT-TTTTTCCCTTTTTTGTTATAAAAAA-GATTT 1943
Query 2004 GGACCACGAATTTGTAACGTATATACTGTTGTCGGAATTATTTTTCCTTATTTTATTGGT 2063
|||||||||||| |||||||||| ||||||||| |||||||| || ||||| ||||||
Sbjct 1944 GGACCACGAATT-GTAACGTATA--CTGTTGTCGAAATTATTTCTC-TTATT--ATTGGT 1997
Query 2064 TGATTTTCAT 2073
||||||||||
Sbjct 1998 TGATTTTCAT 2007
> Ahg945637 jgi|Araly1|945637|scaffold_701866.1
Length=1267
Score = 122 bits (66), Expect = 7e-27
Identities = 124/152 (82%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 742 AGTGAAATTCTGTGACACTTGTTTGCTTTACCGTCCACCTAG-AGCTTCTCATTGTTCCA 800
|||||||| |||||| || || |||||||| | || || | || |||||||||||||
Sbjct 422 AGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGC-TCTCATTGTTCCA 480
Query 801 TATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTG 860
|||||||||||||||| || ||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540
Query 861 GAGTGCGAAATTACCGGT-TCTTCTTCATGTT 891
|| || |||| || ||| | ||||| |||||
Sbjct 541 GACTGAGAAACTATAGGTAT-TTCTTTATGTT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77970731515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5