BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56930.1 Length=2073 Score E Sequences producing significant alignments: (Bits) Value Ahg486136 jgi|Araly1|486136|fgenesh2_kg.5__2128__AT3G56930.1 2898 0.0 Ahg945637 jgi|Araly1|945637|scaffold_701866.1 122 7e-27 > Ahg486136 jgi|Araly1|486136|fgenesh2_kg.5__2128__AT3G56930.1 Length=2007 Score = 2898 bits (1569), Expect = 0.0 Identities = 1903/2050 (93%), Gaps = 80/2050 (4%) Strand=Plus/Plus Query 37 TTCGAGTGAGAGAGACGACAGCTTCCATTATCCCCTGTCTCTCTCCCTCTCGAACTACAA 96 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 25 TTCGAGTGAGAGAGACGACAGCTTCCATT-TTCCTTGTCTCTCTCCCTCTCGAACTACAA 83 Query 97 ATCAAATTCGAGTGTTTTCATATTGTTAATCTTTTTCTTCAAGGAAAGAAGAGATTTTGT 156 ||||||| |||||| ||| | |||||||||| | || ||||||||| Sbjct 84 ATCAAATCCGAGTG-TTTGAAATTGTTAATC----T-TT------------AGATTTTGT 125 Query 157 TTTCCGTTTCTGGGGGTTTTTCTTGATTCTGATCTCTGATCTGATCTCATCATCATTGTC 216 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 126 TTTCCGTTTCTGGGGGTTTTTCTTGATTTTGATCTCTGATCTGATCTGATCATCATTGTC 185 Query 217 CGTGGATTCTCCGATGGGTTTCTGATTGTGGGttctttcaaatttcttcacttttggagc 276 | ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| Sbjct 186 CATGGATTCTCCGATGGGTTTCTGATTCTGGGTTCTTCCAAATTTCTTCACTTCTGGAG- 244 Query 277 ttttcttctctctgtcttttgttttcCCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 336 || | | || || |||||||||||||||||||||||||||||||||| Sbjct 245 -------CT-T-T-TC-------TT-CCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 286 Query 337 GAGGCTCTATCAAGTTTGGAGAGGAAGCAATAAATTTCTATGTGGCGGGAGGCTAATATT 396 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct 287 GAGGCTCTATCAAGTTTGGAGGGGAAGCAATAAATTTCTATGTGGCGGGAGGTTAATCTT 346 Query 397 TGGTCCTGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCTGCTGTAAT 456 |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 347 TGGTCCAGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCGGCCGTAAT 406 Query 457 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTATG 516 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 407 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTCTG 466 Query 517 TATTCCAATTCTCTGTGTGTCTTGGATACTCACAATTTTGGATATATTTTTCCTCTTAAT 576 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 467 TATTCCAATTCTCTGTGTGTCTTGGATACTCACCATTTTGGATATATTTTTCCTCTTAAT 526 Query 577 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTTAGGCCTCCGGAAACCGATGA 636 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 527 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTAAGGCCTCCGGAAACAGATGA 586 Query 637 TGCACCGGATTCAACTACTCCATCGATGGAATGGGTTAGCGGTAGAACCCCTAATATAAG 696 ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 587 TGCACCGGATTCAACTACTCCGTCGTTGGAATGGGTTAGCGGTAGAACCCCAAATATAAG 646 Query 697 AATACC-ACGGGTCAAAGATGTAACTGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 755 |||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 647 AATACCGA-GGGTTAAAGATGTAACCGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 705 Query 756 ACACTTGTTTGCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 815 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 706 ATACTTGTTTGCTTTACCGTCCTCCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 765 Query 816 TCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTACC 875 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 766 TCCAGAGATTCGATCATCACTGCCCTTGGGTTGGCCAGTGTATTGGAGTGCGAAATTACC 825 Query 876 GGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTT 935 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 826 GGTTCTTCTTCATGTTCATATCAACATCTACCACTTTGTGCATATATGTGTTTGCTTTTT 885 Query 936 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 945 Query 996 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1005 Query 1056 GAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAG---ACGACTTATGAGA 1112 |||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct 1006 GAGGACTCACTATATTTCATTCCTATCTCATCTGCACTAACCAGGTGACCACTTATGAGA 1065 Query 1113 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAAGGAATTTTGGGGAACA 1172 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1066 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAGGGAATTTTAGGGAACA 1125 Query 1173 TATGGGAAATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTCA 1232 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1126 TATGGGAGATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTGA 1185 Query 1233 AGGAAGAAGATTATATGATGATGATGGTTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1292 ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1186 AGGAAGAGGATTATATGATGATG--G-TTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1242 Query 1293 TAGTTAGCTCGAAAGAGAAGATTGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1352 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1243 TAGTCAGCTCGAAAGAGAAGATCGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1302 Query 1353 GTGGAAAGAGCTACTCTCTACCTGAGATTCTCCGGAATCTAAACTATGAAGATCTTGAGG 1412 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 1303 GTGGAAAGAGCTACTCTCTGCCTGAGATCCTCCGGAATCTAAACTATGAAGATCTCGAGG 1362 Query 1413 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCACCATCACCATCAAC 1472 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1363 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCATCATCACCATCAAC 1422 Query 1473 ATCAACATAATGAGGGAATCATCCCTCCTTTTGACCCtttttttACCAATGAGATTGGTA 1532 || || | ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1423 AT-AA--T---GAGGGAATCATCCCTCCTTTTGACCCTTTTTTTACCAATGAGAATGGTA 1476 Query 1533 GTAACAAAGATGAGAGAAATGGAGAAGAATCAGGAGGATCTTCAAGTGATGGTGAAAATA 1592 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || Sbjct 1477 GTAACAAAGATGAGAGAAATGCAGAAGAATCAGGAGGATCTTCAAGTGATGATGAAGATG 1536 Query 1593 CAGGGAAACGCGTTCGGGTCTCAGATGAAGATGAAGAGAAAGTTGAAGGGTATGAACGAA 1652 ||||||||||||||||||| | || | |||||||||||||| |||||||||||||||| Sbjct 1537 CAGGGAAACGCGTTCGGGT-T--GA--A-GATGAAGAGAAAGTGGAAGGGTATGAACGAA 1590 Query 1653 ATTGGAGTACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAGCAAGCTCTC 1712 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1591 ATTGGAATACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAACAAGCTCTC 1650 Query 1713 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1651 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1710 Query 1773 ATGGAGTTTGTGCTTTATCATTCTTTTAATTCTGTTTCATATAATTGTGGGaaaaaaaaT 1832 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1711 ATGGAGTTTGTGCTTTATCATTCTTTTAATTGTGTTTCATATAATTGTGG-AAAAAAAAT 1769 Query 1833 CCGAAAAATAACAATCATCTTAGAAAATT-G-TGAGTTTGAGCACTAGAtttttttattt 1890 |||| ||||||||||||| |||| | || | || ||||||||||||||||||||| ||| Sbjct 1770 CCGAGAAATAACAATCAT-TTAGGAC-TTCGATGGGTTTGAGCACTAGATTTTTTTTTTT 1827 Query 1891 ttAAAATTC-TCCTTTTTAGTTGTATTTATATATACCAGAATGG-TC-T--GGATATCAC 1945 || || |||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 1828 TTTT--TTAATCCTTTTTAGTTGTATTTATATATACCAGAATGGCTCATCTGGATATCAC 1885 Query 1946 CAGCATCACATAttttctct-cttttttatttttcc-ttttttGTTATaaaaaaaGATTT 2003 |||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| ||||| Sbjct 1886 CAGCATCACATATTTTATCTTCTTTTTT-TTTTTCCCTTTTTTGTTATAAAAAA-GATTT 1943 Query 2004 GGACCACGAATTTGTAACGTATATACTGTTGTCGGAATTATTTTTCCTTATTTTATTGGT 2063 |||||||||||| |||||||||| ||||||||| |||||||| || ||||| |||||| Sbjct 1944 GGACCACGAATT-GTAACGTATA--CTGTTGTCGAAATTATTTCTC-TTATT--ATTGGT 1997 Query 2064 TGATTTTCAT 2073 |||||||||| Sbjct 1998 TGATTTTCAT 2007 > Ahg945637 jgi|Araly1|945637|scaffold_701866.1 Length=1267 Score = 122 bits (66), Expect = 7e-27 Identities = 124/152 (82%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 742 AGTGAAATTCTGTGACACTTGTTTGCTTTACCGTCCACCTAG-AGCTTCTCATTGTTCCA 800 |||||||| |||||| || || |||||||| | || || | || ||||||||||||| Sbjct 422 AGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGC-TCTCATTGTTCCA 480 Query 801 TATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTG 860 |||||||||||||||| || ||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540 Query 861 GAGTGCGAAATTACCGGT-TCTTCTTCATGTT 891 || || |||| || ||| | ||||| ||||| Sbjct 541 GACTGAGAAACTATAGGTAT-TTCTTTATGTT 571 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77970731515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5