BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56950.2
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938662 jgi|Araly1|938662|scaffold_502853.1 1203 0.0
Ahg486137 jgi|Araly1|486137|fgenesh2_kg.5__2129__AT3G56940.1 187 1e-46
> Ahg938662 jgi|Araly1|938662|scaffold_502853.1
Length=755
Score = 1203 bits (651), Expect = 0.0
Identities = 702/727 (97%), Gaps = 2/727 (0%)
Strand=Plus/Plus
Query 197 TCGTTGGAATCGAAAAATGGGACGAATCGGTTTAGTAGTGACTGATCTGGTATTGTCGTT 256
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 5 TCGTTGGAATCGAAAAATGGGACGAATCGGTTTAGTTGTGTCTGATCTGGTATTGTCGTT 64
Query 257 CATGTGGATATGGGCAGGAGTTCTGGTCAACATTTTAGTCCATGGAGTTCTTGGATTTAG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CATGTGGATATGGGCAGGAGTTCTGGTCAACATTTTAGTCCATGGAGTTCTTGGATTTAG 124
Query 317 CCGGACCGATCCTTCCGGTGAGATCGTTCGTTATCTCTTCTCTATCATCTCCATGTTCAT 376
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CCGGAGCGATCCCTCCGGTGAGATCGTTCGTTATCTCTTCTCTATCATCTCCATGTTCAT 184
Query 377 CTTCGCCTACCTTCAACAAGCCACCAAAGGCGGGCTTTATAATCCTTTGACCGCTTTGGC 436
|||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 185 CTTCGCCTTCCTTCAACAAATCACCAAAGGCGGACTTTATAATCCTTTGACCGCTTTGGC 244
Query 437 TGCTGGAGTCTCCGGTGGCTTCAGCAGTTTCATCTTCTCCGTCTTCGTTCGAATCCCCGT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TGCTGGAGTCTCCGGTGGCTTCAGCAGTTTCATCTTCTCCGTCTTCGTTCGAATCCCCGT 304
Query 497 CGAGGTAATAGGATCAATTCTTGCGGTTAAGCATATCATTCACGTATTCCCTGAGATTGG 556
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 305 CGAGGTAATGGGATCAATTCTTGCGGTTAAGCATGTCATTCACGTATTCCCTGCGATTGG 364
Query 557 GAAAGGACCTAAACTA-AATGTAGCAATTCACCACGGTGCTTTAACAGAAGGGATACTAA 615
|||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 365 GAAAGGACCTAAACTACAA-GTAGCAATCCATCACGGTGCTTTAACAGAAGGGATACTAA 423
Query 616 CATTCTTCATTGTACTGCTCTCAATGGGACTAACAAGAAAAATCCCGGGAAGTTTCTTCA 675
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 424 CATTCTTCATTGTACTGCTCTCATTGGGACTCACAAGAAAAATCCCGGGAAGTTTCTTCA 483
Query 676 TGAAGACTTGGATCGGTAGTCTTGCTAAGTTAACTCTTCATATTCTTGGCTCTGATCTTA 735
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGAAGACTTGGATTGGTAGTCTTGCTAAGTTAACTCTTCATATTCTTGGCTCTGATCTTA 543
Query 736 CCGGTGGATGCATGAACCCTGCAGCTGTTATGGGATGGGCTTATGCACGCGGTGAACATA 795
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 544 CCGGCGGATGCATGAACCCTGCAGCTGTTATGGGATGGGCTTATGCACGAGGTGAACATA 603
Query 796 TAACGAAAGAGCATTTACTTGTGTATTGGCTTGGACCTGTGAAGGCTACGTTGCTTGCAG 855
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 604 TAACAAAAGAGCATTTACTTGTGTATTGGCTTGGACCTGTGAAGGCTACATTGCTTGCAG 663
Query 856 TTTGGTTCTTCAAAGTTGTGTTTAAGCCTCTCACCGAAGAACAAGAGAAACCTAAGGCCA 915
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 664 TTTGGTTCTTCAAAGTTGTGTTTAAGCCTCTCACCGAAGAACAACAGAAACCTAAGGCTA 723
Query 916 AATCTGA 922
|| ||||
Sbjct 724 AAACTGA 730
> Ahg486137 jgi|Araly1|486137|fgenesh2_kg.5__2129__AT3G56940.1
Length=1435
Score = 187 bits (101), Expect = 1e-46
Identities = 139/155 (90%), Gaps = 11/155 (7%)
Strand=Plus/Minus
Query 963 GTATCAACCAGTTCAATAAAATCTGAAATTTAAGT-AAGTCCAATGCGCAATATGATCAA 1021
||||||||||||||||||||| ||||||||| ||| || ||||||| | ||| |||||||
Sbjct 1435 GTATCAACCAGTTCAATAAAAGCTGAAATTT-AGTGAA-TCCAATGTGTAATTTGATCAA 1378
Query 1022 ATATATGCAGT-AAA--A----GTTTATTGCaaaaaaaaaaaGACGATGTTTCTCAGTTT 1074
|||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1377 TTATATGCAGTAAAAGTATTTGGTTTATTGC-AAAAAAAAAAGACGATGTTTCTCAGTTT 1319
Query 1075 CGATCATTCAATTACAAGAAATCAAGAACCAGCCG 1109
|||||||||||||||||||||||||||||||||||
Sbjct 1318 CGATCATTCAATTACAAGAAATCAAGAACCAGCCG 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5