BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56960.1
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898637 jgi|Araly1|898637|Al_scaffold_0005_2603 4006 0.0
Ahg934940 jgi|Araly1|934940|scaffold_402928.1 2429 0.0
> Ahg898637 jgi|Araly1|898637|Al_scaffold_0005_2603
Length=2340
Score = 4006 bits (2169), Expect = 0.0
Identities = 2283/2340 (98%), Gaps = 0/2340 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAAGGAACAAAGCTGTGTTCTAAAGGCTTGGGAGGTGACCGTAAGAAAGACCCAA 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAAGGAACAAAGCTGTGTTCTTAAGGCTTGGGAGGTGACCGTAAGAAAGACCCAA 60
Query 61 CAAGCGAAGAAGCGTGCAAACAGCATTTTTGGGACGGTATCTGTAGCTCCACAGACAGAT 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 61 CAAGCGAAGAAGCGTGCAAACAGCATTTTTGGGACGGTATCTGTATCTCCACAAACAGAC 120
Query 121 GATGATGCTACTACTACGACTGAGGAGAATGATGATGAGACCAGCACTAACAGAAGCAGC 180
|||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 121 GATGATACTACTACGACGACTGAGGAGATTGACGATGAGACCAGCACTAACAGAAGCAGC 180
Query 181 ATAGGGGAATTGTACCATGCAGAGAGAATACTTCCTAATGGAGACTATTATACAGGGCAA 240
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 181 ATAGGGGAATTGTACCATGCAGAGAGAATACTTCCTAATGGGGACTATTACACTGGGCAA 240
Query 241 TGGTATGATAGTTTTCCTCACGGGCATGGGAAGTATCTTTGGACAGATGGTTGCATGTAC 300
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 241 TGGTATGATAGTTTTCCTCACGGGCACGGCAAGTATCTTTGGACAGATGGTTGCATGTAC 300
Query 301 ATTGGTGACTGGTACAACGGGAAGACTATGGGAAGAGGGAAGTTCGGGTGGCCTTCTGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGGTGACTGGTACAACGGGAAGACTATGGGAAGAGGGAAGTTCGGGTGGCCTTCTGGT 360
Query 361 GCCACATATGAAGGCGAATTCAAAAGTGGATACATGGATGGTGTTGGCCTTTACACAGGT 420
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCACTTATGAAGGCGAATTTAAAAGTGGATACATGGATGGTGTTGGCCTTTACACAGGT 420
Query 421 CCTAGTGGAGATACTTATAAAGGTCAGTGGGTGATGAACCTGAAACATGGACATGGAATC 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CCTAGTGGAGATACTTATAAAGGTCAGTGGGTGATGAACCTGAAACATGGGCATGGAATC 480
Query 481 AAGCGTTTCGCGAATGGAGATGTGTATGATGGTGAATGGAGGAGGGGTTTGCAAGAAGCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGCGTTTCGCGAATGGAGATGTGTATGATGGTGAATGGAGGAGGGGTTTGCAAGAAGCC 540
Query 541 CAAGGAAAGTATCAGTGGAGAGATGGGAGCTATTACATGGGGGAATGGAAGAACGCTACG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 541 CAAGGAAAGTATCAGTGGAGAGATGGGAGCTATTACATGGGGGAATGGAAGAACGGTATG 600
Query 601 ATCTGTGGCAAAGGTACTTTTATTTGGACGGATGGGAATAGATACGACGGATTTTGGGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTGTGGCAAAGGTACTTTTATTTGGACGGATGGGAATAGATACGACGGATTTTGGGAT 660
Query 661 GACGGTTTTCCTAGAGGAAACGGTACTTTCAAATGGGCTGATGGGAGTTTCTACGTTGGT 720
|||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 GACGGTTTCCCTAAAGGAAATGGGACTTTCAAATGGGCTGATGGGAGTTTCTACGTTGGT 720
Query 721 CATTGGTCTAATGATCCGGAAGAGATGAACGGTACTTATTATCCATCAGGAGACGACGGG 780
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 721 CATTGGTCTAATGATCCGGAAGAAATGAACGGTACTTATTATCCATCGGGAGACGAAAGG 780
Query 781 AGTCCTGAATGGGATCCTAAAGACGTGTTTACTAATCTGAGTGAGTACAAGATCTGCAGC 840
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 AATCCTGAATGGGATCCTAAAGACGTGTTTGGTAATCTGAGTGAGTACAAGATCTGCAGC 840
Query 841 GGAGAGAGAGTTCCTGTGTTGCCTTCACAGAAAAAGCTATCTGTTTGGAACTCTTCCAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAGAGAGAGTTCCTGTGTTGCCTTCACAGAAAAAGCTATCTGTTTGGAACTCTTCCAAA 900
Query 901 CGTGTCGAGAAACCGAGGAGGATGTCTGTTGACGGGAGGGTAAGTGTGGGTGTAGATAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGTGTCGAGAAACCGAGGAGGATGTCTGTTGACGGGAGGGTAAGTGTGGGTGTAGATAGA 960
Query 961 GCGTTTGAGAAGATGAATATGTGGGGAACCGAAAGCGGAGAAGGTGCTGCTGATATTGAT 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 GCGTTTGAGAAGATGAATATGTGGGGAACCGAAAGCGGAGAAGGCGCTGCTGATATTGAT 1020
Query 1021 TCCACCACGAGGAGGGACTTGGATGCTGAAATGATGAGACTAGAGGCTGAAGGGTTCATT 1080
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1021 TCGACCACGAGGAGGGACTTAGATGCTGAAATGATGAGACTAGAGGCCGAAGGCTTCATT 1080
Query 1081 CAGAGCCTGAGACCGAGCCCTGCACCTATGAGATTGCCAAGGGCAGGGAGGAAGCAAGGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGAGCCTGAGACCGAGCCCTGCACCTATGAGATTGCCAAGGGCAGGGAGGAAGCAAGGC 1140
Query 1141 GAGACGATATCTAAAGGCCACCGGAATTACGAGCTTATGCTTAATCTACAGCTTGGAATC 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGACAATATCTAAAGGCCACCGGAATTACGAGCTTATGCTTAATCTACAGCTTGGAATC 1200
Query 1201 AGACATGCTGTTGGAAAACAAGCTCCGGTTGTGTCTCTTGATCTTAAGCATTCGGCTTTT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGACATGCTGTTGGAAAACAAGCTCCGGTTGTGTCTCTTGATCTTAAGCATTCGGCTTTC 1260
Query 1261 GATCCAAAGGAGAAGGTATGGACAAGATTTCCACCAGAAGGAACCAAATACACACCTCCT 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 GATCCAAAGGAGAAGGTATGGACAAGATTTCCACCAGAAGGAACAAAATACACACCTCCT 1320
Query 1321 CATCAATCTAGTGAATTCAAATGGAAAGACTATTGCCCATTAGTTTTTAGGAGCTTGAGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CATCAATCTAGTGAATTCAAATGGAAAGACTATTGCCCATTAGTTTTTAGGAGCTTGAGG 1380
Query 1381 AAGCTATTCAAGGTAGACCCAGCTGATTACATGTTATCGATCTGCGGGAATGATGCCCTT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 AAGCTATTCAAGGTAGACCCAGCTGATTACATGTTATCGATCTGCGGGAATGATGCACTT 1440
Query 1441 CGGGAGCTATCATCCCCTGGTAAGAGTGGAAGCTTTTTCTACTTGACAAATGATGATCGT 1500
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1441 CGGGAGCTATCATCCCCTGGTAAAAGTGGAAGCTTTTTCTACTTGACAAATGATGATCGT 1500
Query 1501 TACATGATAAAGACAATGAAGAAGTCTGAAACTAAAGTGCTTCTGAGGATGCTTGCAGCA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TACATGATAAAGACAATGAAGAAGTCTGAAACTAAAGTGCTTCTGAGGATGCTTGCAGCA 1560
Query 1561 TATTACAACCATGTTCGAGCATTTGAGAACACTTTGGTCATTAGATTCTACGGTCTCCAC 1620
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1561 TATTACAACCATGTTCGAGCATTTGAAAACACTTTGGTCATTAGATTCTACGGTCTCCAC 1620
Query 1621 TGTGTGAAGTTAACTGGACCAATCCAAAAGAAGGTGCGGTTTGTCATTATGGGAAACCTA 1680
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1621 TGTGTGAAGTTGACTGGACCAATCCAAAAGAAGGTGCGGTTTGTCATTATGGGAAATCTA 1680
Query 1681 TTTTGTTCTGAGTACTCCATCCACAGACGCTTTGATTTGAAAGGATCTTCTCTTGGCCGT 1740
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1681 TTTTGTTCCGAGTACTCCATTCATAGACGCTTTGATTTGAAAGGATCTTCTCTTGGCCGT 1740
Query 1741 ACAACCGATAAACCTGAATCGGAAATCAATTCAAATACAATTTTGAAAGATCTTGATCTG 1800
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1741 ACAACTGATAAACCTGAATCAGAAATCAATTCAAATACAATCTTGAAAGATCTTGATCTG 1800
Query 1801 AATTTCATTTTTAGACTACAGAAAGCTTGGTACCAAGAATTCATCAGGCAAGTCGACAAA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 AATTTCATTTTTAGACTACAGAAAGCTTGGTACCAAGAATTCATCAGGCAAGTCGACAAA 1860
Query 1861 GACTGCGAGTTTCTAGAACAGGAGAGAATAATGGATTACAGTCTTCTGGTTGGGATTCAT 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 GACTGCGAGTTTCTAGAACAGGAGAGAATAATGGATTACAGTCTTCTGGTTGGGATTCAT 1920
Query 1921 TTCAGAGAGGCATCAGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGCACACCTATTGGT 1980
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1921 TTCAGAGAAGCATCAGTCGCTGGTGAGCTGATTCCTTCTGGAGCTCGCACGCCTATTGGT 1980
Query 1981 GAATTTGAAGACGAATCAGCCCCTCGTCTCTCTAGAGCAGACGTGGATCAGCTTCTCTCT 2040
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GAATTTGAAGATGAATCAGCCCCTCGTCTCTCTAGAGCAGACGTGGATCAGCTTCTCTCT 2040
Query 2041 GATCCTACAAGGTGGGCTAGTATCAGACTTGGAGGCAACATGCCGGCTCGAGCAGAGAGG 2100
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2041 GATCCTACAAGGTGGGCTAGTATTAGACTTGGAGGCAACATGCCAGCTCGAGCAGAGAGG 2100
Query 2101 ACAATGAGGAGAAGCGACTGTGAGTTCCAGCTAGTTGGCGAACCGACAGGAGAGTACTAT 2160
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2101 ACAATGAGGAGAAGCGACTGTGAGTTCCAGCTAGTTGGTGAACCGACAGGAGAGTACTAT 2160
Query 2161 GAGGTTGTCATGATCTTTGGAATCATAGACATTCTTCAAGACTATGATATCAGCAAGAAA 2220
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2161 GAGGTTGTCATGATCTTTGGAATCATAGATATTCTTCAAGACTATGACATCAGCAAGAAA 2220
Query 2221 CTAGAACACGCTTACAAGAGCATCCAGTACGATCCTACTTCAATCTCAGCCGTCGATCCG 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CTAGAACACGCTTACAAGAGCATCCAGTACGATCCTACTTCAATCTCAGCCGTCGATCCG 2280
Query 2281 AGGCTGTACTCGAGACGTTTCCGTGATTTCATCTTCAAGGTCTTCACTGAGGATAATTGA 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 AGGCTGTACTCGAGACGTTTCCGTGATTTCATCTTCAAGGTCTTCACTGAGGATAATTGA 2340
> Ahg934940 jgi|Araly1|934940|scaffold_402928.1
Length=2359
Score = 2429 bits (1315), Expect = 0.0
Identities = 2018/2356 (86%), Gaps = 53/2356 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAAGGAACAAAGCTGTGTTCTAAAGGCTTGGGAGGTGACCGTAAGAAAGACCCAA 60
||||||||||| ||||||| ||||||||| || |||||||||||||| ||||||| ||
Sbjct 21 ATGAGCAAGGACCAAAGCTATGTTCTAAAAGCATGGGAGGTGACCGTGCGAAAGACTCAG 80
Query 61 CAAGCGAAGAAGCGTGCAAACAGCATTTTTGGGACGGTATCTGTAGCTCCACAGACAGAT 120
||||| |||||||| ||||| ||| ||||||| || ||||| ||||||||||| ||||||
Sbjct 81 CAAGCCAAGAAGCGGGCAAATAGCGTTTTTGGAACAGTATCGGTAGCTCCACATACAGAT 140
Query 121 GATGATGCTACTACTACGACTGAGGAGAATGATGATGAGACCAGCACTAACAGAAGCAGC 180
| ||| || ||||| ||||| || ||||| |||||||||| ||||||||| ||||||
Sbjct 141 -A--ATG--AC-ACTACAACTGATGAAAATGACGATGAGACCACCACTAACAGGAGCAGC 194
Query 181 AT-AGGGGAATTGTACCATGCAGAGAGAATACTTCCTAATGGAGACTATTATACAGGGCA 239
| || |||||| |||||||| |||||| | ||||| ||||| ||||| || ||||||||
Sbjct 195 -TCAGAGGAATTCTACCATGCTGAGAGAGTGCTTCCCAATGGGGACTACTACACAGGGCA 253
Query 240 ATGGTATGATAGTTTTCCTCACGGGCATGGGAAGTATCTTTGGACAGATGGTTGCATGTA 299
||||||||||| ||||||||| || |||||||| || || |||||||| || ||||||||
Sbjct 254 ATGGTATGATAATTTTCCTCATGGCCATGGGAAATACCTCTGGACAGACGGCTGCATGTA 313
Query 300 CATTGGTGACTGGTACAACGGGAAGACTAT-GGGAAGAGGGAAGTTCGGGTGGCCTTCTG 358
||| |||||||||||||| ||||| || || ||||| || || || |||||||| ||||
Sbjct 314 CATCGGTGACTGGTACAATGGGAAAACCATGGGGAA-TGGAAAATTTGGGTGGCCATCTG 372
Query 359 GTGCCACATATGAAGGCGAATTCAAAAGTGGATACATGGATGGTGTT-GGCCTTTACACA 417
|||||||||| ||||| || || |||||||| |||||||||||| || || | ||||||
Sbjct 373 GTGCCACATACGAAGGAGAGTTTAAAAGTGGTTACATGGATGGTATTGGGAC-GTACACA 431
Query 418 GGTCCTAGTGGAGATACTTATAAAGGTCAGTGGGTGATGAACCTGAAACATGGACATGGA 477
||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 432 GGTCCAAGTGGAGATGCTTATAAAGGTCAGTGGGTGATGAACCTGAAGCATGGACATGGC 491
Query 478 ATCAAGCGTTTCGCGAATGGAGATGTGTATGATGGTGAATGGAGGAGGGGTTTGCAAGAA 537
||||| |||| || |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 492 GTCAAGAGTTTTGCAAATGGAGATGCCTATGATGGTGAATGGAGGAGAGGTTTGCAAGAA 551
Query 538 GCCCAAGGAAAGTATCAGTGGAGAGATGGGAGCTATTACATGGGGGAATGGAAGAACGCT 597
| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| | |
Sbjct 552 GGTCAAGGAAAGTATCAATGGAGCGATGGGAGCTATTACATCGGTGAATGGAAGAATGGT 611
Query 598 ACGATCTGTGGCAAAGGTACTTTTATTTGGACGGATGGGAATAGATACGACGGATTTTGG 657
||||||||||||||||| | |||| ||||||| |||| ||||| |||||||| ||||||
Sbjct 612 ACGATCTGTGGCAAAGGGAGTTTTGTTTGGACAAATGGAAATAGGTACGACGGTTTTTGG 671
Query 658 GATGACGGTTTTCCTAGAGGAAACGGTACTTTCAAATGGG-CTGATGGGAGTTTCTACGT 716
||||| || || || ||||| || || || |||||||||| | ||||||||||||| ||
Sbjct 672 GATGAAGGGTTCCCCAGAGGGAATGGGACGTTCAAATGGGAC-AATGGGAGTTTCTATGT 730
Query 717 TGGTCATTGGTCTAATGATCCGGAAGAGATGAACGGTACTTATTATCCATCAGGAGACGA 776
||| |||||||| || ||||| || || |||||||||||||||||||| |||||| | ||
Sbjct 731 TGGCCATTGGTCCAAGGATCCAGAGGAAATGAACGGTACTTATTATCCGTCAGGAAATGA 790
Query 777 CGGGAGTCCTGAATGGGATCCTAAAGACGTGTTTACTAATCTGAGTGAGTACAAGATCTG 836
|||| || |||||||||||||||||| |||||| |||||| |||||||||| ||||||
Sbjct 791 AGGGAATCTTGAATGGGATCCTAAAGATTTGTTTAATAATCTTAGTGAGTACACGATCTG 850
Query 837 CAGCGGAGAGAGAGTTCCTGTGTTGCCTTCACAGAA-AAAGCTATCTGTTTGGAACTCTT 895
|||||| ||||| |||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 851 CAGCGGCGAGAGGGTTCCTACGTTGCCTTCACAGAAGAAA-CTATCTGTTTGGAACTCTT 909
Query 896 CCAAACGTGTCGAGAAACCGAGGAGGATGTCTGTTGACGGGAGGGTAAGTGTGGGTGTAG 955
|||| ||| | |||||||| ||||||| ||| ||||| ||||||||||||||||| || |
Sbjct 910 CCAAGCGTATAGAGAAACCTAGGAGGACGTCGGTTGATGGGAGGGTAAGTGTGGGCGTTG 969
Query 956 ATAGAGCGTTTGAGAAGATGAATATGT-GGGGAACCGAAAGCGGAGAAGGTGCTGCTGAT 1014
||||||||||||||||||||||||||| |||||| ||||| ||| ||||| | |||||
Sbjct 970 ATAGAGCGTTTGAGAAGATGAATATGTGGGGGAA-CGAAATCGGTGAAGGAGGTGCTG-- 1026
Query 1015 ATTGATTCCACCACGAGGAGGGACTTGGATGCTGAAATGATGAGACTAGAGGCTGAAGGG 1074
| | | | ||||| ||| |||||||| || |||||||| | || |||||| ||
Sbjct 1027 A-T-A-T-------GAGGAAGGAGTTGGATGCAGAGTTGATGAGATTGGACGCTGAA-GG 1075
Query 1075 TTCATTCAGAGCCTG-AGACCGAGCCCTGCACCTATGAGATTGCCAAGGGCAGGGAGGAA 1133
| |||||||||||| || ||||||||| ||||||| | |||||| ||||||||||||
Sbjct 1076 -T-ATTCAGAGCCTGAAG-TCGAGCCCTGTTCCTATGAAACTGCCAAAGGCAGGGAGGAA 1132
Query 1134 GCAAGGCGAGACGATATCTAAAGGCCACCGGAATTACGAGCTTATGCTTAATCTACAGCT 1193
||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||| |
Sbjct 1133 ACAAGGGGAGACGATATCCAAAGGCCATCGCAATTACGAGCTTATGCTTAATCTACAG-T 1191
Query 1194 T-GGAATCAGACATGCTGTTGGAAAACAAGCTCCGGTTGTGTCTCTTGATCTTAAGCATT 1252
| |||||||| ||| |||| |||| ||||||||| | | ||||||||||| |||| ||
Sbjct 1192 TAGGAATCAGGCATTCTGTCGGAAGACAAGCTCCAGCGGCATCTCTTGATCTGAAGCCTT 1251
Query 1253 CGGCTTTTGATCCAAAGGAGAAGGTATGGACAAGATTTCCAC-CAGAAGGAACCAAATAC 1311
| ||||| |||||||| || ||| |||||| || ||||| | | ||||||||||| |||
Sbjct 1252 CAGCTTTCGATCCAAAAGATAAGATATGGAGGAGGTTTCCGCGC-GAAGGAACCAAGTAC 1310
Query 1312 ACACCTCCTCATCAATCTAGTGAATTCAAATGGAAAGACTATTGCCCATTAGTTTTTAGG 1371
|||||||| ||||| |||| |||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1311 ACACCTCCACATCAGTCTACTGAATTCAAATGGAAAGATTATTGCCCACTAGTTTTCAGG 1370
Query 1372 AGCTTGAGGAAGCTATTCAAGGTAGACCCAGCTGATTACATGTTATCGATCTGCGGGAAT 1431
|||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 1371 AGCTTGAGGAAGCTATTCAAAGTCGACCCAGCTGATTACATGTTATCTATCTGTGGGAAT 1430
Query 1432 GATGCCCTTCGGGAGCTATCATCCCCTGGTAAGAGTGGAAGCTTTTTCTACTTGACAAAT 1491
||||||||||| || |||||||||||||| || ||||| |||||||| || || |||||
Sbjct 1431 GATGCCCTTCGAGAACTATCATCCCCTGGAAAAAGTGGGAGCTTTTTTTATTTAACAAAC 1490
Query 1492 GATGATCGTTACATGATAAAGACAATGAAGAAGTCTGAAACTAAAGTGCTTCTGAGGATG 1551
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||
Sbjct 1491 GATGATCGTTACATGATAAAAACAATGAAGAAGTCGGAAACAAAAGTGCTTCTGGGGATG 1550
Query 1552 CTTGCAGCATATTACAACCATGTTCGAGCATTTGAGAACACTTTGGTCATTAGATTCTAC 1611
|||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||
Sbjct 1551 CTTGCAGCATATTATAACCATGTTCGAGCATTTGAGAACTCTTTGGTAATCAGATTCTTT 1610
Query 1612 GGTCTCCACTGTGTGAAGTT-AACTGGACCAATCCAAAAGAAGGTGCGGTTTGTCATTAT 1670
||||| ||||||||||| || || |||||||| ||||||||||||||| || ||||||||
Sbjct 1611 GGTCTACACTGTGTGAAATTGAA-TGGACCAACCCAAAAGAAGGTGCGATTCGTCATTAT 1669
Query 1671 GGGAAACCTATTTTGTTCTGAGTACTCCATCCACAGACGCTTTGATTTGAAAGGATCTTC 1730
||| || || ||||||||| ||||||| | ||||||||||||||| | |||||||||||
Sbjct 1670 GGGTAATCTGTTTTGTTCTAAGTACTCTGTTCACAGACGCTTTGATCTAAAAGGATCTTC 1729
Query 1731 TCTTGGCCGTACAACCGATAAACCTGAATCGGAAATCAATTCAAATACAATTTTGAAAGA 1790
||||||||||||||| || ||||||||||| |||||| ||||||| || || || |||||
Sbjct 1730 TCTTGGCCGTACAACTGACAAACCTGAATCAGAAATCGATTCAAACACGATCTTAAAAGA 1789
Query 1791 TCTTGATCTGAATTTCATTTTTAGACTACAGAAAGCTTGGTACCAAGAATTCATCAGGCA 1850
|| || |||||||||||||| ||| | |||||||| |||||||||||||||||||||||
Sbjct 1790 CCTCGACCTGAATTTCATTTTCAGATTGCAGAAAGCATGGTACCAAGAATTCATCAGGCA 1849
Query 1851 AGTCGACAAAGACTGCGAGTTTCTAGAACAGGAGAGAATAATGGATTACAGTCTTCTGGT 1910
| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1850 AATCGATAAAGACTGCGAGTTTCTAGAACAGGAGAGAATCATGGATTACAGTCTTCTAGT 1909
Query 1911 TGGGATTCATTTCAGAGAGGCATCAGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGCAC 1970
||||||||| |||||||| || || |||||||||||||||||||||||||||||||| ||
Sbjct 1910 TGGGATTCACTTCAGAGAAGCTTCTGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGAAC 1969
Query 1971 ACCTATTGGTGAATTTGAAGACGAATCAGCCCCTCGTCTCTCTAGAGCAGACGTGGATCA 2030
|||||||||||||| ||||| ||||||| ||||||||| ||||||||||| || ||| |
Sbjct 1970 ACCTATTGGTGAATCAGAAGAAGAATCAGGCCCTCGTCTTTCTAGAGCAGAGGTTGATGA 2029
Query 2031 GCTTCTCTCTGATCC-TACAAGGTGGGCTAGTATCAGACTTGGAGG-C-AACATGCCGGC 2087
|||||| || ||||| | | |||||||| ||||| ||| |||| || | |||||||| ||
Sbjct 2030 GCTTCTTTCAGATCCCT-CTAGGTGGGCAAGTATTAGA-TTGG-GGACCAACATGCCAGC 2086
Query 2088 TCGAGCAGAGAGGACAATGAGGA-GAAGCGACTGTGAG-TTCCAGCTAGTTGGCGAACCG 2145
|| |||||||| |||||||| | ||| |||||||||| ||| |||| || || |||||
Sbjct 2087 GCGTGCAGAGAGAACAATGAGAAAGAA-CGACTGTGAGCTTC-AGCTTGTGGGAGAACCT 2144
Query 2146 ACAGGAGAGTACTATGAGGTTGTCATGATCTTTGGAATCATAGACATTCTTCAAGACTAT 2205
|||||||||| ||| || || || ||||| ||||| || || ||||||||||| || |||
Sbjct 2145 ACAGGAGAGTTCTACGAAGTGGTGATGATATTTGGCATAATTGACATTCTTCAGGATTAT 2204
Query 2206 GATATCAGCAAGAAACTAGAACACGCTTACAAGAGCATCCAGTACGATCCTACTTCAATC 2265
|||||||||||||| || |||||||||||||||||||| ||||| |||||| | || ||
Sbjct 2205 GATATCAGCAAGAAGCTTGAACACGCTTACAAGAGCATACAGTATGATCCTTCCTCTATA 2264
Query 2266 TCAGCCGTCGATCCGAGGCTGTACTCGAGACGTTTCCGTGA-TTTCATCTTCAAGGTCTT 2324
|| || || |||||||| | |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 2265 TCTGCGGTTGATCCGAGACAATACTCGAGGCGTTTCCGTGACTTT-ATCTTCAAGGTCTT 2323
Query 2325 CACTGAGGATAATTGA 2340
||| || || ||||||
Sbjct 2324 CACAGATGACAATTGA 2339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88140826930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5