BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56970.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1 1153 0.0
Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751 739 0.0
> Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1
Length=861
Score = 1153 bits (624), Expect = 0.0
Identities = 738/793 (93%), Gaps = 8/793 (1%)
Strand=Plus/Plus
Query 35 CTTGTCCTTGATTAAGCAAAAAATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGG 94
|||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 22 CTTGTCCTTGATTAAGGAAAAAATGTGTGCATTAGTCCCTCCATTGTTCCCAAACTTCGG 81
Query 95 TTGGCCGTCAAC-GAATCAATACGAAAGCTATTACGGTGCCGGAGATAACCTAAATAACG 153
|||||||| || | | || | ||||||||||||||||| |||||||||||| |||||||
Sbjct 82 TTGGCCGTTGACGGGA-CAGTGCGAAAGCTATTACGGTGGCGGAGATAACCTTAATAACG 140
Query 154 GCACATTTCTTGAATTGACGGTACCACAGACTTAT-GA--AGTGACTCATCATCAGAATA 210
||||||||||||| || ||||||||| ||||||| || | |||||||||||||||| |
Sbjct 141 GCACATTTCTTGATTTTCCGGTACCACCGACTTATGGAGTACTGACTCATCATCAGAACA 200
Query 211 GCTTGGGAGTATCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCA 270
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 201 GCTTGGAAGTATCTGTTTCGTCAGAAGGAAATGAGATAGCCAACAATCCGGTCGTGGCCA 260
Query 271 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCT 330
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 261 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGTCGCAAGAAGATCAACTCTTTGTTCT 320
Query 331 CATCTCTCCGTTCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAA 390
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 321 CATCTCTCCGTTCATGTCTTCCAGTTTCCGATCAATCGAAGAAGCTAAGTATTCCTGAAA 380
Query 391 CGGTTTCAAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATAC 450
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 381 CGGTTTCGAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAAGCTACTAC 440
Query 451 AAAAGAAGGAAGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATA 510
|||||||||||||| ||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct 441 AAAAGAAGGAAGAACTTTTGGTTCGAGTGTCAGGTCATCGAGACTTTGAAATTTACGATA 500
Query 511 AGCAGCAACCAAAGGCGGTCGCGAGTTATCTCTCAACGGTTTCTGCCACTAGGCTTGGTG 570
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 501 AGCAGCAATCAAAGGCGGTCGCTAGTTATCTCTCAACAGTTTCTGCCACTAGGCTTGGTG 560
Query 571 ACAACGAAGTGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 630
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACAACGAAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 620
Query 631 TGTTGGGTGGGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTC 690
|||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 621 TGTTGGGTGGTATAGAGGAAGATGGGGTTGTTCTTGTGGATGTTTCATCTTCAAGATCTC 680
Query 691 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATG---ATTACA 747
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 681 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTAGAGAATATGGATGACTATTACA 740
Query 748 AGATTAATTGCGAAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 807
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGATTAATTGTGAAGAGTTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 800
Query 808 CGTTTAACTAGGT 820
|||||||||||||
Sbjct 801 CGTTTAACTAGGT 813
> Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751
Length=777
Score = 739 bits (400), Expect = 0.0
Identities = 653/774 (84%), Gaps = 22/774 (3%)
Strand=Plus/Plus
Query 57 ATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGGTTGGCCGTCAAC-GAATCAATA 115
|||||||||||||| ||| |||| ||| ||||||| || ||||| ||||| | | | ||
Sbjct 1 ATGTGTGCATTAGTACCTCCATTGTTCCCAAACTTTGGGTGGCCATCAACGGGA-GAGTA 59
Query 116 CGAAAGCTATTACGGT-GCCGGAGATAACCTAAATAACGGCACATTTCTTGAATTGACGG 174
||| ||||| ||| | |||||||||| ||| || |||||| | |||||||| || |||
Sbjct 60 CGACAGCTACTAC-CTAGCCGGAGATATCCTCAACAACGGCGCGTTTCTTGATTTTCCGG 118
Query 175 TACC--A-CAGACTTATGAAG-TG----A-C--TCA-TCATCAGAATAGC-TTGGGAGTA 221
|||| | ||||||||| || || | | | | |||||| | ||| ||||| ||
Sbjct 119 TACCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCATCATCAGAGCTTTGGG-GTT 177
Query 222 TCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCAAGAAGCTTAAT 281
|||| |||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 178 TCTGCTTCGTCGGAAGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 237
Query 282 CACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCTCATCTCTCCGT 341
|||||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct 238 CACAATGCTAGTGAGCGTGACCGTCGCAAGAAAATTAACTCTTTGTTCTCATCTCTCCGT 297
Query 342 TCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAACGGTTTCAAAG 401
||||||||||| || || || ||||||||||||||||| ||||||| || ||||| |
Sbjct 298 TCATGTCTTCCTGCCTCCGACCAATCGAAGAAGCTAAGCATTCCTGCGACAGTTTCTC-G 356
Query 402 A-GCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATACAAAAGAAGGA 460
| |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 357 AAGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGA 416
Query 461 AGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATAAGCAGCAACC 520
|||| | ||||| | ||| || ||||||||| || |||| | ||||| ||||| ||||||
Sbjct 417 AGAACTCTTGGTGCAAGTGTCAGGTCAAAGAAACATTGAACATTACGTTAAGCCGCAACC 476
Query 521 AAAGGCGGTCGCGAGTTATC-TCTCAACGGTTTCTGCCACTAGGCTTGGTGACAACGAAG 579
||||||||| |||||||| | |||| || || ||||| ||||||||||| ||||||||||
Sbjct 477 AAAGGCGGTGGCGAGTTA-CATCTCGACCGTGTCTGCGACTAGGCTTGGAGACAACGAAG 535
Query 580 TGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGGGTG 639
||||||||||| |||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 536 TGATGGTCCAAATCTCATCGTCTAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTG 595
Query 640 GGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTCAAGGAGAGA 699
|| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
Sbjct 596 GGTTAGAAGAAGATGGGTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAA 655
Query 700 GGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATGATTACAAGATTAATTGCG 759
|||| ||||||||||| ||||| ||| |||| || || || |||||||| | |||||||
Sbjct 656 GGCTTTTCTACACTTTCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCG 715
Query 760 AAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTCGTTTA 813
|||| |||||| | ||||||||||||||||| ||| |||||| |||||| ||||
Sbjct 716 AAGAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCATTTA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5