BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56970.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1 1153 0.0 Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751 739 0.0 > Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1 Length=861 Score = 1153 bits (624), Expect = 0.0 Identities = 738/793 (93%), Gaps = 8/793 (1%) Strand=Plus/Plus Query 35 CTTGTCCTTGATTAAGCAAAAAATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGG 94 |||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||| Sbjct 22 CTTGTCCTTGATTAAGGAAAAAATGTGTGCATTAGTCCCTCCATTGTTCCCAAACTTCGG 81 Query 95 TTGGCCGTCAAC-GAATCAATACGAAAGCTATTACGGTGCCGGAGATAACCTAAATAACG 153 |||||||| || | | || | ||||||||||||||||| |||||||||||| ||||||| Sbjct 82 TTGGCCGTTGACGGGA-CAGTGCGAAAGCTATTACGGTGGCGGAGATAACCTTAATAACG 140 Query 154 GCACATTTCTTGAATTGACGGTACCACAGACTTAT-GA--AGTGACTCATCATCAGAATA 210 ||||||||||||| || ||||||||| ||||||| || | |||||||||||||||| | Sbjct 141 GCACATTTCTTGATTTTCCGGTACCACCGACTTATGGAGTACTGACTCATCATCAGAACA 200 Query 211 GCTTGGGAGTATCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCA 270 |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| || Sbjct 201 GCTTGGAAGTATCTGTTTCGTCAGAAGGAAATGAGATAGCCAACAATCCGGTCGTGGCCA 260 Query 271 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCT 330 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 261 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGTCGCAAGAAGATCAACTCTTTGTTCT 320 Query 331 CATCTCTCCGTTCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAA 390 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 321 CATCTCTCCGTTCATGTCTTCCAGTTTCCGATCAATCGAAGAAGCTAAGTATTCCTGAAA 380 Query 391 CGGTTTCAAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATAC 450 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 381 CGGTTTCGAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAAGCTACTAC 440 Query 451 AAAAGAAGGAAGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATA 510 |||||||||||||| ||||||| ||||| || ||||| |||||||||| ||||||||| Sbjct 441 AAAAGAAGGAAGAACTTTTGGTTCGAGTGTCAGGTCATCGAGACTTTGAAATTTACGATA 500 Query 511 AGCAGCAACCAAAGGCGGTCGCGAGTTATCTCTCAACGGTTTCTGCCACTAGGCTTGGTG 570 |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 501 AGCAGCAATCAAAGGCGGTCGCTAGTTATCTCTCAACAGTTTCTGCCACTAGGCTTGGTG 560 Query 571 ACAACGAAGTGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 630 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 561 ACAACGAAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 620 Query 631 TGTTGGGTGGGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTC 690 |||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 621 TGTTGGGTGGTATAGAGGAAGATGGGGTTGTTCTTGTGGATGTTTCATCTTCAAGATCTC 680 Query 691 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATG---ATTACA 747 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 681 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTAGAGAATATGGATGACTATTACA 740 Query 748 AGATTAATTGCGAAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 807 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 AGATTAATTGTGAAGAGTTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 800 Query 808 CGTTTAACTAGGT 820 ||||||||||||| Sbjct 801 CGTTTAACTAGGT 813 > Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751 Length=777 Score = 739 bits (400), Expect = 0.0 Identities = 653/774 (84%), Gaps = 22/774 (3%) Strand=Plus/Plus Query 57 ATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGGTTGGCCGTCAAC-GAATCAATA 115 |||||||||||||| ||| |||| ||| ||||||| || ||||| ||||| | | | || Sbjct 1 ATGTGTGCATTAGTACCTCCATTGTTCCCAAACTTTGGGTGGCCATCAACGGGA-GAGTA 59 Query 116 CGAAAGCTATTACGGT-GCCGGAGATAACCTAAATAACGGCACATTTCTTGAATTGACGG 174 ||| ||||| ||| | |||||||||| ||| || |||||| | |||||||| || ||| Sbjct 60 CGACAGCTACTAC-CTAGCCGGAGATATCCTCAACAACGGCGCGTTTCTTGATTTTCCGG 118 Query 175 TACC--A-CAGACTTATGAAG-TG----A-C--TCA-TCATCAGAATAGC-TTGGGAGTA 221 |||| | ||||||||| || || | | | | |||||| | ||| ||||| || Sbjct 119 TACCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCATCATCAGAGCTTTGGG-GTT 177 Query 222 TCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCAAGAAGCTTAAT 281 |||| |||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 178 TCTGCTTCGTCGGAAGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 237 Query 282 CACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCTCATCTCTCCGT 341 |||||||||||||| |||||||| |||||||| || ||| |||||||||||||||||||| Sbjct 238 CACAATGCTAGTGAGCGTGACCGTCGCAAGAAAATTAACTCTTTGTTCTCATCTCTCCGT 297 Query 342 TCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAACGGTTTCAAAG 401 ||||||||||| || || || ||||||||||||||||| ||||||| || ||||| | Sbjct 298 TCATGTCTTCCTGCCTCCGACCAATCGAAGAAGCTAAGCATTCCTGCGACAGTTTCTC-G 356 Query 402 A-GCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATACAAAAGAAGGA 460 | |||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||| Sbjct 357 AAGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGA 416 Query 461 AGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATAAGCAGCAACC 520 |||| | ||||| | ||| || ||||||||| || |||| | ||||| ||||| |||||| Sbjct 417 AGAACTCTTGGTGCAAGTGTCAGGTCAAAGAAACATTGAACATTACGTTAAGCCGCAACC 476 Query 521 AAAGGCGGTCGCGAGTTATC-TCTCAACGGTTTCTGCCACTAGGCTTGGTGACAACGAAG 579 ||||||||| |||||||| | |||| || || ||||| ||||||||||| |||||||||| Sbjct 477 AAAGGCGGTGGCGAGTTA-CATCTCGACCGTGTCTGCGACTAGGCTTGGAGACAACGAAG 535 Query 580 TGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGGGTG 639 ||||||||||| |||||||||| ||||||||||||||||||||||| ||||| || ||| Sbjct 536 TGATGGTCCAAATCTCATCGTCTAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTG 595 Query 640 GGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTCAAGGAGAGA 699 || ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | Sbjct 596 GGTTAGAAGAAGATGGGTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAA 655 Query 700 GGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATGATTACAAGATTAATTGCG 759 |||| ||||||||||| ||||| ||| |||| || || || |||||||| | ||||||| Sbjct 656 GGCTTTTCTACACTTTCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCG 715 Query 760 AAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTCGTTTA 813 |||| |||||| | ||||||||||||||||| ||| |||||| |||||| |||| Sbjct 716 AAGAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCATTTA 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5