BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56980.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751 1218 0.0
Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1 721 0.0
Ahg902084 jgi|Araly1|902084|Al_scaffold_0004_2734 261 6e-69
> Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751
Length=777
Score = 1218 bits (659), Expect = 0.0
Identities = 733/769 (95%), Gaps = 3/769 (0%)
Strand=Plus/Plus
Query 1 ATGTGTGCATTAGTACCTCCATTGTTTCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTGCATTAGTACCTCCATTGTTCCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
Query 61 GACAGCTACTACCTCGCCGGAGATATCCTCAACAACGGCGGGTTTCTTGATTTTCCGGTA 120
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GACAGCTACTACCTAGCCGGAGATATCCTCAACAACGGCGCGTTTCTTGATTTTCCGGTA 120
Query 121 CCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCAACATCAGAATAGCTTTGGTGTT 180
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct 121 CCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCATCATCAG---AGCTTTGGGGTT 177
Query 181 TCTGTTTCGTCGGAGGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 240
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTGCTTCGTCGGAAGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 237
Query 241 CACAATGCTAGTGAGCGTGACCGTCGCAGGAAAATTAACTCTTTGTTCTCATCTCTCCGT 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 CACAATGCTAGTGAGCGTGACCGTCGCAAGAAAATTAACTCTTTGTTCTCATCTCTCCGT 297
Query 301 TCATGTCTTCCTGCCTCTGGCCAATCGAAGAAGCTAAGCATTCCTGCGACGGTTTCTCGA 360
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TCATGTCTTCCTGCCTCCGACCAATCGAAGAAGCTAAGCATTCCTGCGACAGTTTCTCGA 357
Query 361 AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGAA 417
Query 421 GAGCTCTTGGTGCAAATTTCAGGTCAAAGAAACACTGAATGTTACGTTAAGCAGCCACCA 480
|| |||||||||||| | |||||||||||||||| |||| ||||||||||| || ||||
Sbjct 418 GAACTCTTGGTGCAAGTGTCAGGTCAAAGAAACATTGAACATTACGTTAAGCCGCAACCA 477
Query 481 AAGGCCGTCGCGAATTATATCTCGACCGTTTCTGCGACTAGGCTTGGTGACAACGAAGTG 540
||||| || |||| ||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 478 AAGGCGGTGGCGAGTTACATCTCGACCGTGTCTGCGACTAGGCTTGGAGACAACGAAGTG 537
Query 541 ATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTGGG 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGGTCCAAATCTCATCGTCTAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTGGG 597
Query 601 TTAGAAGAAGATAGGTTTGTTCTTGTGGACATGTCATCTTCAAGGTCTCAAGGAGAAAGG 660
|||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 598 TTAGAAGAAGATGGGTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAAGG 657
Query 661 CTTTTCTACACTTTGCATTTACAAGTGGAGAAGATTGAAAATTACAAGCTGAATTGCGAA 720
|||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 658 CTTTTCTACACTTTCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCGAA 717
Query 721 GAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCAT 769
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCAT 766
> Ahg486140 jgi|Araly1|486140|fgenesh2_kg.5__2132__AT3G56970.1
Length=861
Score = 721 bits (390), Expect = 0.0
Identities = 653/777 (84%), Gaps = 29/777 (4%)
Strand=Plus/Plus
Query 1 ATGTGTGCATTAGTACCTCCATTGTTTCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
|||||||||||||| ||||||||||| |||||||| || ||||| | |||||| ||| |
Sbjct 44 ATGTGTGCATTAGTCCCTCCATTGTTCCCAAACTTCGGTTGGCCGTTGACGGGACAGTGC 103
Query 61 GACAGCTACTAC-CTCGCCGGAGATATCCTCAACAACGGCGGGTTTCTTGATTTTCCGGT 119
|| ||||| ||| | | |||||||| ||| || |||||| |||||||||||||||||
Sbjct 104 GAAAGCTATTACGGT-GGCGGAGATAACCTTAATAACGGCACATTTCTTGATTTTCCGGT 162
Query 120 ACCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCAACATCAGAATAGCTTTGG-TG 178
||| | |||||||||| | | | | ||||||| |||||||| ||| |||| |
Sbjct 163 ACC--A-CCGACTTATGGA---G-T--A-C--TGACTCATCATCAGAACAGC-TTGGAAG 209
Query 179 TTTCTGTTTCGTCGGAGGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTA 238
| ||||||||||| || |||||||| |||| |||||||||||| || | |||||||||||
Sbjct 210 TATCTGTTTCGTCAGAAGGAAATGAGATAGCCAACAATCCGGTCGTGGCCAAGAAGCTTA 269
Query 239 ATCACAATGCTAGTGAGCGTGACCGTCGCAGGAAAATTAACTCTTTGTTCTCATCTCTCC 298
|||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 270 ATCACAATGCTAGTGAACGTGACCGTCGCAAGAAGATCAACTCTTTGTTCTCATCTCTCC 329
Query 299 GTTCATGTCTTCCTGCCTCTGGCCAATCGAAGAAGCTAAGCATTCCTGCGACGGTTTCTC 358
||||||||||||| | || | ||||||||||||||||| ||||||| |||| || ||
Sbjct 330 GTTCATGTCTTCCAGTTTCCGATCAATCGAAGAAGCTAAGTATTCCTGAAACGG-TT-TC 387
Query 359 G-A-AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAA 416
| | ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 388 GAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAAGCTACTACAAAAGAA 447
Query 417 GGAAGAGCTCTTGGTGCAAATTTCAGGTCAAAGAAACACTG-AATGTTACGTTAAGCAGC 475
|||||| || ||||| | | | |||||||| || || || ||| ||||| ||||||||
Sbjct 448 GGAAGAACTTTTGGTTCGAGTGTCAGGTCATCGAGACTTTGAAAT-TTACGATAAGCAGC 506
Query 476 CACCAAAGGCCGTCGCGAATTATATCTCGACCGTTTCTGCGACTAGGCTTGGTGACAACG 535
| ||||||| ||||| | |||| |||| || |||||||| |||||||||||||||||||
Sbjct 507 AATCAAAGGCGGTCGCTAGTTATCTCTCAACAGTTTCTGCCACTAGGCTTGGTGACAACG 566
Query 536 AAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCTAATGTTTTAA 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 567 AAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGG 626
Query 596 GTGGGT-TAGAAGAAGATAGGTTTGTTCTTGTGGACATGTCATCTTCAAGGTCTCAAGGA 654
|||| | |||| |||||| || ||||||||||||| | ||||||||||| |||||||||
Sbjct 627 GTGG-TATAGAGGAAGATGGGGTTGTTCTTGTGGATGTTTCATCTTCAAGATCTCAAGGA 685
Query 655 GAAAGGCTTTTCTACACTTTGCAT-TTACAAGTGGAGAAGATTGAA-A--ATTACAAGCT 710
|| ||||| ||||||||||||||| || ||||| ||||| || || | |||||||| |
Sbjct 686 GAGAGGCTCTTCTACACTTTGCATCTT-CAAGTAGAGAATATGGATGACTATTACAAGAT 744
Query 711 GAATTGCGAAGAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTC 767
||||| |||||||||||| | ||||||||||||||||| ||| |||||| ||||||
Sbjct 745 TAATTGTGAAGAGTTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTC 801
> Ahg902084 jgi|Araly1|902084|Al_scaffold_0004_2734
Length=729
Score = 261 bits (141), Expect = 6e-69
Identities = 448/589 (76%), Gaps = 49/589 (8%)
Strand=Plus/Plus
Query 212 ACAATCCGGTGGTCG-TCAAGAAGCTTAATCACAATGCTAGTGAGCGTGACCGTCGCAGG 270
||||||| ||||| | | ||||| ||||||||||| || || |||||||| ||||||| |
Sbjct 167 ACAATCCCGTGGT-GATGAAGAAACTTAATCACAACGCGAGCGAGCGTGAGCGTCGCAAG 225
Query 271 AAAATTAACTCTTTGTTCTCATCTCTCCGTTCATGTCTTCCTGCCTCTGGCCAATCGAAG 330
|| || ||| | ||||||||||||| ||||| |||||||| ||| | |||||||||
Sbjct 226 AAGATCAACGCAATGTTCTCATCTCTTCGTTCTTGTCTTCCGGCCACCAATCAATCGAAG 285
Query 331 AAGCTAAG-CATTCCTGCGACGGTTTCTCGAAGC-TTGAAGTACATACCAGAGCTGCAAG 388
|||||||| |||| || || ||||| | | || |||||||||||||||||||||||||
Sbjct 286 AAGCTAAGTGTTTCC-GCAACAGTTTCAC-AGGCATTGAAGTACATACCAGAGCTGCAAG 343
Query 389 AGCAAGTGAAGAAGCTAATAAAAAAGAAGGAAGAGCTCTTGGTGCAAATTTCAGGTCAAA 448
||||||| || || || ||||| ||||| |||||||||| | | ||||| || |||||||
Sbjct 344 AGCAAGTTAAAAATCTCATAAAGAAGAAAGAAGAGCTCTCGTTTCAAATATCGGGTCAAA 403
Query 449 GAAA-CACTGAATGTTAC-GTT-AAG-CAGCCA-CCAAAGGC--CG-TCGCGAA-TTATA 499
|| | | | | | | || | || ||| | ||| || || || | || ||||
Sbjct 404 GAGATCTC-GTTTCT-ACCGGCCAAAACAGTAAGCCAGAGAAAACGATCAC-AAGTTATG 460
Query 500 TC-TCGACCGTTTCTGCGACTAGGCT-TGGTGACAACGAAGTGATGGTCCAAATCTCATC 557
| || || ||||||||||| ||||| || ||| | |||||||||||||||||| |||||
Sbjct 461 -CATCAACAGTTTCTGCGACAAGGCTCTG-TGAGACCGAAGTGATGGTCCAAATTTCATC 518
Query 558 GTC-CAAGATTCATAACTTTTCGATATCT-AATGTTTTAAGTGG-GTTAGAAGAAGATAG 614
|| || | | | || | |||| | | ||||| | ||||| || |||||||||| |
Sbjct 519 GTTACAGGCTGAAAAA-TGTTCGTT-TGGGAATGTGCTGAGTGGAGT-AGAAGAAGATGG 575
Query 615 GTTTGTTCTTGTGGACATG-T-CATCTTCAAGGTCTCAAGGAGAAAGGCT-TTTCTACAC 671
||| ||||||||||| || | |||| ||||||||||||||||| | || ||| ||| |
Sbjct 576 GTTGGTTCTTGTGGA--TGCTTCATCCTCAAGGTCTCAAGGAGAGCGACTCTTT-TACTC 632
Query 672 TTTGCAT-TTACA-AGTGGAGAAGATTGAAAATTACAAGCTGAATTGCGAAGAGTTAAGT 729
||||||| || || | |||| || || | || | |||||| |||||||||| ||
Sbjct 633 TTTGCATCTT-CAGA-TGGA-AA-ATGGC------CAGG-TGAATTCCGAAGAGTTAGGT 681
Query 730 CAGAGGAT-GTTGTACTTGTATGAGGAATGTGGAAACTCATATATATGA 777
| || || |||||||||||| ||| |||||||| |||| | || ||||
Sbjct 682 GATAG-ATTGTTGTACTTGTACGAGAAATGTGGACACTCGTTTACATGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5