BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56990.1
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486142 jgi|Araly1|486142|fgenesh2_kg.5__2134__AT3G56990.1 3406 0.0
> Ahg486142 jgi|Araly1|486142|fgenesh2_kg.5__2134__AT3G56990.1
Length=2347
Score = 3406 bits (1844), Expect = 0.0
Identities = 2105/2229 (94%), Gaps = 25/2229 (1%)
Strand=Plus/Plus
Query 2 TTTTGGCTTCAATTTTTGCGTTTTCTCTGCAACTCGCCGTCAAGGGTAGAAGAATTAGGG 61
||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 TTTTGACTTCAAATTTTGCGTTTCCTCTGCAACTCGCCGTCAAGGGTGGAAGAATTAGGG 60
Query 62 GTTCCTGTTC--T-TAA-CTGCTTGAAGATGACGTCTTATGGAGATAGACTGAAGTCGAC 117
||||||||| | ||| ||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 61 TTTCCTGTTCTATCTAACCTGCTTGTAGATGGCGTCTTATGGAGACAGACTGAAGTCGAC 120
Query 118 CTCCATTAATGGAGTTAAGTTATACAATGTTTCTTCTGCTCCCAATGTTCCTACTTGGCT 177
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 121 CTCCATTAATGGAGTTAAGTTATACCATGTTTCTTCTGCTCCCAATGTTGCGACTTGGCT 180
Query 178 TAATCCTAAGAAGCAACGAGCTCTCCGCAAAAACCCTCATTATATGCAAAGAGTGGAGCT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAATCCTAAGAAGCAACGAGCTCTCCGCAAAAACCCTCATTATATGCAAAGAGTGGAGCT 240
Query 238 GATTCAGGAGTTGAAGTTTGAGACTGCCACTACTAGAATCAAAGCGACTCCAGACGGAGA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTCAGGAGTTGAAGTTTGAGACTGCCACTACTAGAATCAAAGCGACTCCAGACGGAGA 300
Query 298 GTATCTGATTGCTTCAGGCATATATCCACCACAGGTAAAAGTTTATGAGCTAAATCAGCT 357
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 301 GTATCTGATTGCTTCAGGCATATATCCACCTCAGGTCAAAGTTTATGAGCTAGGTCAGCT 360
Query 358 TGCTTTGAAGTTTGAGAGGCATTTGGACTCGGAAATAGTTGATTTCGAGATATTGGATGA 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TGCTTTGAAGTTTGAGAGGCATTTGGACTCGGAGATAGTTGATTTCGAGATATTGGATGA 420
Query 418 TGACTTCTCAAAGCTTGCCTTCTTATGTGCTGATCGTTCTATT-AATTTACACGCCAAAT 476
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 421 TGACTTCTCAAAGCTTGCCTTCTTATGTGCTGATCGTTCTATTCAACT-ACACGCCAAAT 479
Query 477 ACGGGAAACACCACACTTTACGAATTCCAAGGATGGGGAGAGATATGACATATGATTCCT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 ACGGGAAACACCACACTTTACGAATTCCAAGGATGGGGAGAGATATGACATATGATCCCT 539
Query 537 GGTCTTGTGATCTTCTTTGCGCTGCTTCCTCACCTGATCTATATAGAATCAATTTGGAGC 596
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 GGTCTTGTGATCTTCTTTGCGCTGCTTCCTCACCTGATCTATACAGAATCAATTTGGAGC 599
Query 597 AGGGAAGATTTCTTTCTCCTCTCAGCACTCAATCCCCAGCGCTTAATGTCGTTTCTCGAA 656
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 600 AGGGAAGATTTCTCTCTCCTCTCAGCACTCAATCCCCAGCCCTTAATGTTGTTTCTCGAA 659
Query 657 GCAACCTCCATGGATTAGTTGCTTGTGGTGGTGAGGATGGTGCTGTGGAATTTTTTGATA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCAACCTCCATGGATTAGTTGCTTGTGGTGGTGAGGATGGTGCTGTGGAATTTTTTGATA 719
Query 717 TGAGAATGAAATCATCTGCTGCTAGAATTAACGCGGTCACACATGGTGGTGATGCTGCTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAGAATGAAATCATCTGCTGCTAGAATTAACGCGGTCACACATGGTGGTGATGCTGCTG 779
Query 777 CGGAGGTTACTGCTATAGAGTTTGATGACAGTGAAGGTCTTCAAGTAGCTGTCGGGAGTA 836
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGGAGGTTACTGCTATCGAGTTTGATGACAGTGAAGGTCTTCAAGTAGCTGTCGGGAGTA 839
Query 837 GCGCGGGAAAGGTATTCATATACGACTTGCGTACTTCAACTCCCATAAGAGTGAAGGATC 896
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 GTGCGGGAAAGGTATTCATATACGACTTGCGTACTTCAACTCCAATAAGAGTGAAGGATC 899
Query 897 ACATGTACGAGAGCCCAATTTTGAATATTAAGTGGCAACGGACTCTTAATACTCAACAAC 956
| |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 900 ATATGTACGAGAGCCCGATTTTGAGTATAAAGTGGCAACGAACTCTTAATACTCAACAAC 959
Query 957 CTAAGTTGATTACTACCGACAAACACATTGTTAGAATATGGGATCCAAACACGGGAGAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTAAGTTGATTACTACCGACAAACACATTGTTAGAATATGGGATCCAAACACGGGAGAAG 1019
Query 1017 GTATGACCAGCATTGAACCGACTCAAGGAGGAATAAACGACATTTGTGTGTTCCGTGGAA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTATGACCAGCATTGAACCGACTCAAGGAGGAATAAACGACATTTGTGTGTTCCGTGGAA 1079
Query 1077 GCGGACTTATGCTTCTTGCTTTAGACTCTAGCCTAATCCCATCTTACTTCATACCTGAAC 1136
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 GCGGACTTATGCTTCTTGCTTTAGACTCTAGCCTAATTCCATCTTACTTCATACCTGAAC 1139
Query 1137 TCGGTCCTGCCCCCAAATGGTGTTCTCCTCTTGAAAATCTAACGGAAGAGTTGGAGGAAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCGGTCCTGCCCCCAAATGGTGTTCTCCTCTTGAAAATCTAACGGAAGAGTTGGAGGAAA 1199
Query 1197 GTGCACAGACAACTATTTATGATAATTACAAATTTTTGGCAATGGAAGATCTGGAGAAGT 1256
||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1200 GTGGACAGACAACTATTTATGATAATTACAAATTCGTGACAAAGGAAGATCTGGAGAAGT 1259
Query 1257 TGCAGCTAACTCATTTGATTGGAACAGATCTTTTGAAAGCATCTA-TGCATGGATATTTT 1315
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1260 TGCAGCTAACTCATTTGATTGGAACAGATCTTTTGAAAGCA-CAAATGCATGGATATTTT 1318
Query 1316 ATTAATTACCATTTGTACAAAAAGGCTTTAGCAGTGATTGAACCTTTTGCATTTGATGAT 1375
|| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1319 ATGAATCACCATTTGTACAAAAAGGCTTTAGCAGTGGCTGAACCTTTTGCATATGATGCT 1378
Query 1376 TACTTAGAACGTAGGAAGCAAGAGAAGTTAGAAGAGCAGCGTACGCAGAGAATCACAAAA 1435
||||||||||||| |||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1379 TACTTAGAACGTAAGAAGCAAGAGAAGTTAGAAGCGAACCGTACACAGAGAATCACAAAG 1438
Query 1436 AAGAGACGGTTGCCAAAGGTTAACCGAGACCTTGCAGCAAGGCTTCATGGGGACGAATCA 1495
|||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1439 AAGAGAAGGTTGCCAAAGGTTAACCGAGAACTCGCAGCAAGGCTTCATGGGGACGATTCG 1498
Query 1496 GAGGAGGAAAATAAAACTGCCGAGGATGGGGAGGCCACCAAGAAAGTG-CTGAAAAAGAA 1554
|||||||| ||||||||||||||||||| ||||||| ||||||||||| | |||||||||
Sbjct 1499 GAGGAGGAGAATAAAACTGCCGAGGATGAGGAGGCCGCCAAGAAAGTGTC-GAAAAAGAA 1557
Query 1555 GAAACCCATACTTACTGACGAGCATTTCGTAGATGGTCGGTTTGGTTCGATGTTCCAAAA 1614
|||||| ||||||| || |||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 1558 GAAACCGATACTTAGTGGCGAGAATTTCGCAGATGGTCGGTTTAGTTCGATGTTCCAAAA 1617
Query 1615 TCCGGACTTCCAAATTGATA-AGGACTCATATGAATATGGTGTCCTACACCCTGTTGCTT 1673
|||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1618 TCCGGACTACCAAATTGATCCAGAA-TCATATGAATATGGTGTCCTACACCCTGTTGCTT 1676
Query 1674 CTTCGAAGAAGCAACCTTCTCTGTTAGATGAACACTTTGAAGCTGTATCAGATGATGACG 1733
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 1677 CTTCGAAGAAGCAACCTTCTTTGTTAGATGAACACTTTGAAGCTGTATCGGATGATGATG 1736
Query 1734 AGAACAGTGATTCTGATGCATCACAGCCTTCAGATGACGAGGCCGACGATGGAGACGCAA 1793
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1737 AGAACAGTGATTCTGATGCATCACTGGCTTCAGATGACGAGGCCGACGATGGAGACGCAA 1796
Query 1794 CTAGGCCAAGCAAGAAAGCGAGAACTCCGAAGTTGTATGAAGTGAAAGATGAGCGGCATG 1853
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||
Sbjct 1797 CTAGGCCAAGCAAGAAAGCAAGAATTCCGAAGTTGTTTGAAGTGAAAGATGAGCGCCATG 1856
Query 1854 CCGCAGCTTATCACAACCGCACTTCACTGGCTAAAGAAGATAGTCTTCCTATGGGCGAGC 1913
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CCGCAGCTTTTTACAACCGCACTTCACTGGCTAAAGAAGATAGTCTTCCTATGGGCGAGC 1916
Query 1914 GTGTCAAGGCTATAGAGAACCGGCGTGGCAACTTTGGAGGCTCGAAAGATATCAAATTCG 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GTGTCAAGGCTATAGAGAACCGGCGTGGCAACTTTGGAGGCTCGAAAGATATCAAATTCG 1976
Query 1974 GTCCTGGAGGATCACGGGAGTTTTCTTTCAAGGCGAGAGGGTCATC-AAAGTACAAAGAA 2032
|||||||||| || |||||| |||| |||||||||||| | ||||| ||| |||||||||
Sbjct 1977 GTCCTGGAGGGTCTCGGGAGATTTCCTTCAAGGCGAGAAGCTCATCGAAA-TACAAAGAA 2035
Query 2033 GA---------TAGAGACGATGAGTATGAAGATGGGCAAAGAAACAAGAGGAGAGGAGTT 2083
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2036 GACAGAGGAGATAGAGACGATGAGGATGAAGATGGGCAAAGAAACAGGAGGAGAGGAGTT 2095
Query 2084 CAGTCTCTTGGACTGAAATCA-ACAAATATTAGAGGCGGTTTCAGAGGTAGAGGAGGTGG 2142
||||||||||||||||||||| | || | ||||||||||||| ||||| |||||||| ||
Sbjct 2096 CAGTCTCTTGGACTGAAATCAGATAA-TGTTAGAGGCGGTTTTAGAGGGAGAGGAGGCGG 2154
Query 2143 TGGTTTTAGAGGGAGAGGAGGCGGCGGTTCCCGGGGAAAAGGTGGCCGTGGTGGTGGGCG 2202
||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct 2155 CGGTTTTAGAGGGAGAGGAGGCGGCGGTTCCCGGGGAAGAGGAGGTGGTGGTGGTTCCCG 2214
Query 2203 TGGAAGAGG 2211
||||||||
Sbjct 2215 GGGAAGAGG 2223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87455202520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5