BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57000.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486143 jgi|Araly1|486143|fgenesh2_kg.5__2135__AT3G57000.1 1672 0.0
> Ahg486143 jgi|Araly1|486143|fgenesh2_kg.5__2135__AT3G57000.1
Length=1135
Score = 1672 bits (905), Expect = 0.0
Identities = 1066/1141 (93%), Gaps = 21/1141 (2%)
Strand=Plus/Plus
Query 24 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCGC 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCAC 60
Query 84 AAGCTCAAAAAG-TT-CCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 141
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTCAAAAAGTTTAGCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 120
Query 142 TGAACaagagaaaggagagaga-agagaggtatgataaggaagaagatgaagtagaggag 200
|||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||
Sbjct 121 TGAACAAGAGAAAGGAGAGA-ACAGGGAGGTATGATAAGGAAGAAGAAGAAGTAGAGGAA 179
Query 201 CAACcaaagtttgagcaaaaacaaaaggcaagagaaagttcgaagaaagctaaaaaagaa 260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGACCAAAGTTTGAGCAAAAACAAAAGGCAAGAGAAAGTTCGAAGAAAGCTAAAAAAGAA 239
Query 261 agCACTTCAAGAGCAGAGGAAGATAATGACGAGGAGGAAGTAACTGTGGAAGCAACTGCA 320
| ||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||
Sbjct 240 ATCACTTCAAGAGCAGAGGAAGATAATGAAGAGGAGGAAATAACTGAAGAAGTAACAGCA 299
Query 321 GCA---GCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAATGCTCCTAACAAGGAA 377
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 300 GCAGCGGCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAGTGCTCCTAACAGGGAA 359
Query 378 AAGTCTGGCATTGTATTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 437
||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGCCCGGTGTTGTTTTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 419
Query 438 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAAAAAGAATAACAGAAAT 497
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 420 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAGAAAGAACAACAGAAAT 479
Query 498 CCGGCTGATTACCGACCAGACATTACTCATCAGGCGCTTCTTATGATTTTGGATAGTCCG 557
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 480 CCGGCTGATTACCGACCAGACATCACTCATCAGGCTCTTCTTATGATTTTGGATAGTCCG 539
Query 558 GTTAATAAAGCTGGGAGGTTGAAAGCTGTTTATGTTAGAACAGAAAAAGGTGTCCTTTTT 617
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 540 GTTAATAAGGCTGGGAGGTTGAAAGCGGTATATGTTAGAACAGAAAAAGGTGTCCTTTTT 599
Query 618 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCCGGAATCATGTTG 677
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCTGGAATCATGTTG 659
Query 678 CAACTGCTACAAAAGCTGAGCATTACTGCAGTTAACAGCCGTGAGAAGCTTCTACGGTGT 737
||| |||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||
Sbjct 660 CAATTGCTACAAAAGCTGAGCATTTCTGCAGTTGGCAGCGGTGAGAAACTTCTACGGTGT 719
Query 738 GTCAAGAACCCTATCGAAGAACATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 797
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCAAGAACCCTATCGAAGAATATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 779
Query 798 CATAGCTCTGAGAAACTCGTCAATATGCAGAAACACCTAGCTACTGTATGTGATGATGAT 857
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 780 CATAGCTCTGAAAAACTCGTCAATATGCAGAAACACCTAGCTACTATATCTGATGAT-AC 838
Query 858 AGAGACACAGTTTTTGTGGTAGGCGCAATGGCACACGGGAAAATAGACTGCAACTATATC 917
||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 839 AGA--CACAGTTTTTGTGGTCGGCGCAATGGCACACGGGAAAATAGAGTGCGACTATATC 896
Query 918 GATGAATTTGTGTCGGTTTCAGAGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 977
||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 GATGAGTTTTTGTCGATTTCAGGGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 956
Query 978 TGCGAGGCATTAGCAACAAATTGGAATATTATATAAAAGAATGATTATAAGGTCCTTTGT 1037
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||
Sbjct 957 TGCGAGGCATTAGCAACAAATTGGAATATCATATAAA-GAATTATTATAAGGTCCTCTGT 1015
Query 1038 TTTCCTCTCTACTGCTCTAATGGTAGGAACTACTTTAAGCTATGTTGTTGTGATACACAT 1097
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1016 TTTCCTCTCTACTGCTCTAATGAT-GGAACTACTTTAAGCTACAATGTTGTGATACACAT 1074
Query 1098 TGTTTATCTACTATCGAGTTT-A-TAACTT-T---T---CGTTTGAAATTTTGACTCCAC 1148
|||| |||||||||||||||| | |||||| | | |||||||||||||||||||||
Sbjct 1075 TGTTCATCTACTATCGAGTTTTAATAACTTATAACTTTTCGTTTGAAATTTTGACTCCAC 1134
Query 1149 T 1149
|
Sbjct 1135 T 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5