BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57010.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938669 jgi|Araly1|938669|scaffold_502860.1 1784 0.0
> Ahg938669 jgi|Araly1|938669|scaffold_502860.1
Length=1157
Score = 1784 bits (966), Expect = 0.0
Identities = 1071/1123 (95%), Gaps = 2/1123 (0%)
Strand=Plus/Plus
Query 115 TTTTCTTCCAAAGAAAGAAAGATGCCGATTAGCCGGAGAGTTCTGACGCCGATCACCGCC 174
||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TTTTCCTCCACAGAGAGAAAGATGCCGATTAGCCGGAGAGTTCTGACGCCGATCTCCGCC 60
Query 175 GCTCCGGTTATCTTAGCCGTCCTTTGCTTCTTCTTTTGGTCATCAATCATCGGGCCGGAC 234
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GCTCCGGTAATTTTAGCCGTCCTTTGCTTCTTCTTCTGGTCATCAATCATCGGGCCGGAA 120
Query 235 AATTTAAAGGGCACGAAACACGTCCTTCAAGATGCTAAGACCATTCCTCTTCCCGTCGAT 294
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 121 AATATAAAGGGCACGAAACACGTCCTTCAAGATGCTATGACCATTCCTCTTCCCGCCGAT 180
Query 295 GGACCAGAGAGCCTAGAGTTCGATCCACAAGGTGAAGGCCCTTACGTTGGCGTCACCGAC 354
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GGACCAGAGAGCTTAGAGTTCGATCCACAAGGTGAAGGACCTTACGTTGGCGTCACCGAC 240
Query 355 GGTCGCATTCTCAAATGGCGCGGTGAAGAACTCGGCTGGGTCGATTTCGCCTACACTTCT 414
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GGTCGCATTCTCAAATGGCGCGGTGAAGAACTCGGCTGGGTCGATTTTGCCTACACTTCT 300
Query 415 CCTCACAGAGATAACTGTTCGAGTCATGAGGTAGTACCAAGTTGTGGGAGACCATTGGGA 474
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 301 CCTCACAGAGATAACTGTTCGAGGCATGAGGTAGTACCAAGTTGTGGAAGGCCATTGGGA 360
Query 475 CTTAGCTT-CGAGAGGAAAACAGGAGATTTGTACATATGTGATGGTTACTTTGGGGTCAT 533
|||| ||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 361 CTTA-CTTTCGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTACTTTGGCCTCAT 419
Query 534 GAAGGTCGGACCAGAGGGAGGCCTGGCCGAGTTAGTTGTTGATGAAGCCGAAGGTCGTAA 593
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 420 GAAGGTCGGACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTCGAAGGTCGTAA 479
Query 594 AGTTATGTTTGCCAACCAAGGGGATATAGACGAAGAGGAAGATATTTTCTACTTCAATGA 653
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 AGTTATGTTTGCTAACCAAGGAGATATAGACGAAGAGGAAGATATCTTCTACTTCAATGA 539
Query 654 TAGCAGCGATACATACCATTTCAGGGACGTATTTTACGTGTCTTTGTCCGGGACAAAGGT 713
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 540 TAGCAGCGATACATACCATTTCAGGGAAGTATTTTACGTGTCTATGTCCGGGACAAAGGT 599
Query 714 TGGAAGAGTAATTAGATACGATATGAAGAAGAAAGAGGCCAAAGTTATTATGGACAAACT 773
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TGGAAGAGTAATTAGATACGATATGAAGAAGAAAGAGGCCAAAGTAATTATGGACAAACT 659
Query 774 TCGTTTACCAAATGGTCTAGCTCTAAGCAAAAACGGTTCGTTTGTAGTCACATGCGAGAG 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TCGTTTACCAAATGGTCTAGCTCTAAGCAAAAACGGATCGTTTGTAGTCACATGCGAGAG 719
Query 834 TAGTACGAACATTTGCCATAGAATATGGGTCAAAGGTCCCAAATCCGGAACCAACGAGGT 893
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 CAGTACGAACATTTGCCATCGAATATGGGTCAAAGGTCCCAAATCTGGAACCAACGAGGT 779
Query 894 TTTCGCAACGCTCCCTGGTTCCCCGGACAATATCCGGCGTACGCCAACAGGCGATTTCTG 953
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 780 TTTCGCAACGCTCCCTGGTTCCCCTGACAATATCCGGCGTACGCCAACGGGCGATTTCTG 839
Query 954 GGTCGCATTACATTGCAAAAAGAATTTGTTCACACGTGCAGTTTTGATTCACACTTGGGT 1013
||| ||||||||||||||||||||||||||||| ||||| | | ||||||||| || |||
Sbjct 840 GGTGGCATTACATTGCAAAAAGAATTTGTTCACTCGTGCGGCTCTGATTCACAGTTTGGT 899
Query 1014 CGGAAGGTTTTTCATGAACACGATGAAGATGGAGACTGTAATTCATTTCATGAACGGAGG 1073
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 CGGAAGGTTTTTCATGAATACGATGAAGATGGAGACTGTAATCCATTTCATGAACGGAGG 959
Query 1074 AAAACCTCATGGAATTGTCGTGAAACTCTCTGGAGAGACAGGAGAGATTCTTGAGATACT 1133
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 AAAACCTCATGGAATTGTCGTGAAACTCTCTGGAGAGACAGGAGAGATCCTTGAGATACT 1019
Query 1134 TGAGGACAGTGAAGGGAAGACGGTGAAATATGTTAGTGAGGCTTATGAGACAAAAGATGG 1193
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 1020 TGAGGACAGTGAAGGGAAGACGGTGAAGTATGCTAGTGAGGCTTATGAGACAGAAGATGG 1079
Query 1194 AAAGTTATGGATCGGATCTGTGTATTGGCCGGCCGTTTGGGTT 1236
||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1080 AAAGTTATGGATCGGGTCCGTGTATTGGCCGGCCGTTTGGGTT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5