BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57020.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938670 jgi|Araly1|938670|scaffold_502861.1 950 0.0
Ahg938669 jgi|Araly1|938669|scaffold_502860.1 610 8e-174
> Ahg938670 jgi|Araly1|938670|scaffold_502861.1
Length=1073
Score = 950 bits (514), Expect = 0.0
Identities = 581/614 (95%), Gaps = 2/614 (0%)
Strand=Plus/Plus
Query 576 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTGTCAGTGGGGAGCGGTCGGG 635
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 459 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTATCAGTGGGGAGCGGTCGGG 518
Query 636 AAGAGTGATCAGATACGATAAGAAGACGAAAGAAGCCAAAGTTATCATGGACAATCTCGT 695
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 519 AAGAGTGATCAGATACGATAAGAAGACGAAAGAGGCCAAAGTTGTCATGGACAACCTCGT 578
Query 696 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATTACATGCGAGTCCGG 755
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 579 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATAACATGCGAGTCCGG 638
Query 756 CACAAGTCTTGTCCACCGATACTGGATTAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 815
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 639 CACGAGTCTTGTCCACCGATACTGGATCAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 698
Query 816 TGCGAAGGTCCCAGGTTACCCTGACAACATCCGGCTGACATCAACTGGAGACTTTTGGAT 875
||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 699 TGCCAAGGTCCCGGGTTACCCTGACAACATCCGGCTGACATCGAGTGGAGACTTTTGGAT 758
Query 876 TGGTTTACACTGCAAGAAAAATCTGATAGGGAGATTGATTGTGAAGTACAAATGGCTTGG 935
|||| |||||||||||||||| ||| ||||| |||||||| ||| ||| |||||||||||
Sbjct 759 TGGTATACACTGCAAGAAAAACCTGCTAGGGCGATTGATTTTGAGGTATAAATGGCTTGG 818
Query 936 GAAATTGGTAGAAAAGACAATGAAACTGGAGTACGTGATTGCTTTTATTAACGGATTTAA 995
||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 819 GAAATTGGTTGAAAAGACAGTAAAACTGGAGTACGTGATTGCTTTTATCAACGGATTTAA 878
Query 996 ACCGCACGGAGTCGCCGTGAAAATCTCCGGCGAGAC-GGGAGAGGTACTTGAGTTACTTG 1054
|||||| ||||| ||||||||||||||||| ||||| ||| ||||| |||||| ||||||
Sbjct 879 ACCGCAAGGAGTGGCCGTGAAAATCTCCGGGGAGACAGGG-GAGGTCCTTGAGGTACTTG 937
Query 1055 AGGACAAAGAAGGAAAGACAATGAAGTATGTAAGCGAGGCTTATGAAAGAGATGATGGAA 1114
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 938 AGGACAAAGAAGGAAAGACTATGAAGTATGTAAGCGAGGCTTATGAGAGAGATGATGGAA 997
Query 1115 AGTTGTGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1174
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGTTATGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1057
Query 1175 TCATGTTGTATCTA 1188
| ||||||||||||
Sbjct 1058 TTATGTTGTATCTA 1071
Score = 403 bits (218), Expect = 2e-111
Identities = 255/273 (93%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 42 TTGTTCCGGCGGAAAAATGCCCATTAATCAGAAAATTCCGACTTGGTTTGCCGTTCCGGC 101
||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 6 TTGTTCCGGCGAAAAAATGCCCACTAATCACAAAATTCCGACTTGGTTTGCCGTTCCGAC 65
Query 102 TGTTTTTGCTGTCTTGTCCGTAATCTCGTATCAAACCTTAATTGTGCCGGAAAATTTAGA 161
||| || ||||||||||||||| ||| |||||| | ||||||||| ||||||||||||||
Sbjct 66 TGTGTTGGCTGTCTTGTCCGTAGTCTTGTATCAGATCTTAATTGTTCCGGAAAATTTAGA 125
Query 162 GGGCGCCAAAAATGTATTGACAATGGCTAAGACCATACCAATTCCTGTCGCTGGACCGGA 221
|||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 126 GGGCACCAAAAATGTATTGACAATGGCTAAAACCATTCCAATTCCTGTTACTGGACCGGA 185
Query 222 GAGCATTGAGTTTGACCCAAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 281
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GAGCATTGAGTTTGACCCTAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 245
Query 282 TCTCAAGTGGCGCGGCGATGATC-TCGGCTGGG 313
||||||||||||||||||||||| |||||||||
Sbjct 246 TCTCAAGTGGCGCGGCGATGATCATCGGCTGGG 278
Score = 270 bits (146), Expect = 2e-71
Identities = 167/177 (94%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 343 GGGAACTGTTCAAAAAC-TGAAGTAGTGCCTACTTGTGGAAGGCCATTAGGACTTACTTT 401
||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 277 GGGAATTGTTC-AAAACATGAAGTAGTGCCTACTTGTGGAAGGCCATTGGGACTTACTTT 335
Query 402 CGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTACTTGGGGCTCATGAAAGTTGG 461
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 336 CGAGAAGAAAACGGGCGATTTGTACATCTGCGATGGTTACTTGGGGCTCATGAAGGTTGG 395
Query 462 ACCAGAGGGAGGCTTGGCCGAGTTAATTGTTGATGAAGCCGAAGGTCGTAAAGTTAT 518
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 396 ACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTCGAAGGTCGTAAAGTTAT 452
> Ahg938669 jgi|Araly1|938669|scaffold_502860.1
Length=1157
Score = 610 bits (330), Expect = 8e-174
Identities = 828/1060 (78%), Gaps = 68/1060 (6%)
Strand=Plus/Plus
Query 147 GCCGGAAAATTTAGAGGGCGCCAAAAATGT-ATTGACA-ATGGCTAAGACCATACCAATT 204
|||||||||| || ||||| | ||| | || || | | || |||| |||||| || ||
Sbjct 114 GCCGGAAAATATAAAGGGCACGAAACACGTCCTTCA-AGAT-GCTATGACCATTCCTCTT 171
Query 205 CCTGTCGCTGGACCGGAGAGCATT-GAGTTTGACCCAAAAGGAGAAGGTCCTTATGCT-G 262
|| | || |||||| |||||| || ||||| || ||| |||| ||||| ||||| | | |
Sbjct 172 CCCGCCGATGGACCAGAGAGC-TTAGAGTTCGATCCACAAGGTGAAGGACCTTACGTTGG 230
Query 263 CGGTCGTGGACGGCCGTATTCTCAAGTGGCGCGGCGATGATCTCGGCTGGGTTGATTTTG 322
| ||| ||||| || |||||||| |||||||| || || ||||||||||| |||||||
Sbjct 231 C-GTCACCGACGGTCGCATTCTCAAATGGCGCGGTGAAGAACTCGGCTGGGTCGATTTTG 289
Query 323 CCTACACATCTCCTCACAGAGGGAACTGTTCAAAAAC-TGAAGTAGTGCCTACTTGTGGA 381
||||||| ||||||||||||| |||||||| | | ||| ||||| || | |||||||
Sbjct 290 CCTACACTTCTCCTCACAGAGATAACTGTTC-GAGGCATGAGGTAGTACCAAGTTGTGGA 348
Query 382 AGGCCATTAGGACTTACTTTCGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTAC 441
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGGCCATTGGGACTTACTTTCGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTAC 408
Query 442 TTGGGGCTCATGAAAGTTGGACCAGAGGGAGGCTTGGCCGAGTTAATTGTTGATGAAGCC 501
|| || |||||||| || ||||||||||||||||||||||||||| |||||||||||| |
Sbjct 409 TTTGGCCTCATGAAGGTCGGACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTC 468
Query 502 GAAGGTCGTAAAGTTATGTTTGCTAACCAAGGGGATATAGACGAAGAGGAAGATGTCTTT 561
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 469 GAAGGTCGTAAAGTTATGTTTGCTAACCAAGGAGATATAGACGAAGAGGAAGATATCTTC 528
Query 562 TACTTCAATGATAGTAGTGACA-AGTATCATTTCAGGGACGTATTTTTCGTGGCT--GTC 618
|||||||||||||| || || | | || ||||||||||| ||||||| |||| || |||
Sbjct 529 TACTTCAATGATAGCAGCGATACA-TACCATTTCAGGGAAGTATTTTACGTGTCTATGTC 587
Query 619 AGTGGGGAGCGGTCGGGAAGAGTGATCAGATACGATAAGAAGACGAAAGAAGCCAAAGTT 678
| || | ||| || |||||| || |||||||||| ||||| |||||| ||||||||
Sbjct 588 CG-GGACAAAGGTTGG-AAGAGTAATTAGATACGATATGAAGAAGAAAGAGGCCAAAGTA 645
Query 679 ATCATGGACAATCT-CGTTTGTAACAAC-GGTTTGGCTCTAAACAAAGACCGG-TCTTTT 735
|| |||||||| || ||||| | ||| ||| | ||||||| |||| || || || |||
Sbjct 646 ATTATGGACAAACTTCGTTT--ACCAAATGGTCTAGCTCTAAGCAAAAAC-GGATCGTTT 702
Query 736 CTAATTACATGCGAGTCCGGCAC-AAG-TCTTGTCCACCGA-TACTGGATTAAAGGTCCC 792
|| | ||||||||| | | || || | ||| ||| ||| || ||| | |||||||||
Sbjct 703 GTAGTCACATGCGAGAGCAGTACGAACAT-TTG-CCATCGAATA-TGGGTCAAAGGTCCC 759
Query 793 AAAGCCGGGACTCGT-GATATCTTT-GCGAAGG-TCCCAGGTTACCCTGACAACATCCGG 849
||| | || || | || | ||| || || | |||| |||| ||||||||| ||||||
Sbjct 760 AAATCTGGAAC-CAACGAGGT-TTTCGC-AACGCTCCCTGGTTCCCCTGACAATATCCGG 816
Query 850 C-TGACATCAACTGGAGACTTT-TGGATTGGT-TTACACTGCAAGAAA-AATCTGAT-AG 904
| | || |||| || || ||| ||| | || ||||| ||||| ||| ||| || | |
Sbjct 817 CGT-ACGCCAACGGGCGA-TTTCTGGGT-GGCATTACATTGCAA-AAAGAATTTGTTCAC 872
Query 905 G-GAGATTGATTGTGAAGT-ACAAAT-GGCTTGGGAAA-TTGGT-A-GAAAAGACAATGA 958
| | | | ||| | ||| | || | || || || | | ||| | | ||||
Sbjct 873 TCGTGCG-GCTC-TGAT-TCACAGTTTGG-TCGG-AAGGTTTTTCATGAATA--CGATGA 925
Query 959 A-ACTGGAGTAC-GTGATTGCTTTT-ATTAACGGATTTAAACCGCACGGAGTCGCCGTGA 1015
| | ||||| || || || | ||| || |||||| ||||| || ||| | | |||||
Sbjct 926 AGA-TGGAG-ACTGTAATC-CATTTCATGAACGGAGGAAAACCTCATGGAATTGTCGTGA 982
Query 1016 AAATCTCCGGCGAGACGGGAGAGGTACTTGAGTTACTTGAGGACAAAGAAGGAAAGACAA 1075
|| |||| || ||||| |||||| | |||||| |||||||||||| ||||| |||||
Sbjct 983 AACTCTCTGGAGAGACAGGAGAGATCCTTGAGATACTTGAGGACAGTGAAGGGAAGACGG 1042
Query 1076 TGAAGTATG-TAAGCGAGGCTTATGAAAGAGATGATGGAAAGTTGTGGTTTGGGTCTGTT 1134
||||||||| || | ||||||||||| | ||| ||||||||||| ||| | ||||| ||
Sbjct 1043 TGAAGTATGCTA-GTGAGGCTTATGAGACAGAAGATGGAAAGTTATGGATCGGGTCCGTG 1101
Query 1135 TACTGGCCAGCCGTTTGGGTTCT-TGAT-CGCAAATGAGT 1172
|| ||||| |||||||||||| | |||| | ||||| |||
Sbjct 1102 TATTGGCCGGCCGTTTGGGTT-TATGATTC-CAAATAAGT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5