BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57030.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938671 jgi|Araly1|938671|scaffold_502862.1 1792 0.0
> Ahg938671 jgi|Araly1|938671|scaffold_502862.1
Length=1165
Score = 1792 bits (970), Expect = 0.0
Identities = 1095/1157 (95%), Gaps = 2/1157 (0%)
Strand=Plus/Plus
Query 79 CACCAATCACCATGACCATGATGATCATTACAGTGTTCTTAACAGTGATTGCAGCGGTTC 138
||||| |||||||||||||||||||||||||||| |||||||| | ||||| |||||||
Sbjct 10 CACCAGTCACCATGACCATGATGATCATTACAGTATTCTTAACCGCGATTGTTGCGGTTC 69
Query 139 TCGCAATCCTTGTCAAGAATTCTCAAACCGGTTCTGGCATCTTCGCACCGCCTGAAATCT 198
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 70 TCGCAATCCTTGTCAGGACTTCTCAAACCGGTTCTGGTATCTTCGCACCGCCTGAAATCT 129
Query 199 CCGGTTCGCGTGATGTTTTCCCGTCGGCGAAAGTGGTTAACTTAACCGGAGCCTCTGGTC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 130 CCGGTTCGCGTGATGTTTTCCCGTCGGCGAAAGTGGTTAACTTAACCGGAGCCTCCGGTC 189
Query 259 CTGAGAGTATAGCTTTCGATCCAGCAGGTGAAGGTCCGTACGTTGGTGTCTCAGATGGTC 318
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 190 CGGAGAGTATAGCTTTCGATCCAGCAGGTGAAGGTCCGTACGTTGGTGTCTCCGACGGTC 249
Query 319 GTATCTTGAAATGGCGCGGTGAACCGCTTGGATGGTCAGATTTCGCTCACACATCGTCTA 378
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 250 GTGTCTTGAAATGGCGCGGTGAATCGCTTGGATGGTCAGATTTCGCTTACACAGCGTCTA 309
Query 379 ACAGGCAGGAGTGTGCTCGCCCATTTGCACCAGAGTTGGAGCATGTGTGTGGAAGGCCAT 438
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ATAGGCAGGAGTGTGTTCGTCCATTTGCACCAGAGTTGGAGCATGTGTGTGGAAGGCCAT 369
Query 439 TAGGGTTGCGGTTCGATAAGAAAACCGGAGATCTCTACATAGCGGATGCCTACTTTGGCC 498
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 370 TAGGATTGCGGTTCGATAAGAAAACCGGAGATCTCTACATCGCGGATGCATACTTTGGCC 429
Query 499 TTCTTGTTGTTGGTCCTGCTGGTGGTTTAGCCAAACCTCTGGTTACAGAAGCTGAGGGGC 558
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 430 TTCTTGTTGTTGGTCCTGCTGGTGGTTTAGCCAAACCTCTGGTTACTGAAGCCGAGGGGC 489
Query 559 AGCCGTTTCGTTTCACTAATGATTTGGATATTGATGAGCAGGAAGATGTGATT-TACTTT 617
|||| |||||||||||||||||||| || ||||||||||||||||||||| || |||||
Sbjct 490 AGCCATTTCGTTTCACTAATGATTTAGACATTGATGAGCAGGAAGATGTG-TTATACTTC 548
Query 618 ACAGATACTAGTGCCAGATTCCAGAGAAGGCAATTCTTAGCTGCTGTTTTGAACGTCGAT 677
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 549 ACAGATACTAGTGCCAGATTCCAGAGAAGGCAATTCCTGGCTGCCGTTTTGAACGTCGAT 608
Query 678 AAGACTGGAAGGTTTATCAAGTATGATAGATCAAGCAAGAAAGCGACAGTCTTATTACAA 737
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |
Sbjct 609 AAGACTGGAAGGTTTATCAAGTATGACAGATCCAGCAAGAAAGCGACAGTCTTACTACGA 668
Query 738 GGCCTTGCATTTGCAAACGGCGTTGCACTAAGCAAAGACCGGTCTTTTGTATTGGTAGTC 797
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GGCCTTGCATTTGCAAATGGCGTTGCACTAAGCAAAGACCGGTCTTTTGTATTGGTAGTC 728
Query 798 GAAACAACTACTTGCAAGATTCTAAGACTTTGGCTCTCTGGTCCAAACGCAGGAACACAC 857
|||||||| ||||||||||| ||||| ||||||||||||||||||| || |||||||||
Sbjct 729 GAAACAACCACTTGCAAGATCCTAAGGCTTTGGCTCTCTGGTCCAAGTGCGGGAACACAC 788
Query 858 CAAGTGTTTGCTGAGCTTCCGGGTTTCCCTGACAACATCAGAAGAAACTCGAATGGAGAA 917
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 789 GAAGTGTTTTCTGAGCTTCCAGGTTTCCCTGACAACATCAGAAGAAACTCGAATGGAGAA 848
Query 918 TTCTGGGTCGCTTTACACTCAAAGAAAGGTCTTTTCGCGAAACTATCACTTACTCAAACT 977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 849 TTCTGGGTCGCTTTACACTCAAAGAAAGGTCTTTTCGCGAAACTATCACTCACTCAAACT 908
Query 978 TGGTTCAGGGATTTGGTGCTTAGACTTCCGATCAGTCCCCAACGCCTGCACTCGCTGTTC 1037
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 909 TGGTTCAGAGATTTGGTGCTTAGACTTCCGATCAGTCCCCAGCGCCTGCACTCGCTGTTC 968
Query 1038 ACTGGAGGAATACCTCATGCTACAGCCATAAAGCTGAGTGAATCAGGTAAGGTTTTGGAG 1097
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 969 ACTGGAGGAAGACCTCATGCTACAGCCATAAAGCTGAGTGAATCAGGAAAGGTATTGGAG 1028
Query 1098 GTACTTGAGGATAAGGAAGGAAAGACATTGAGGTTTATAAGTGAAGTGGAAGAGAAAGAC 1157
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1029 GTACTCGAGGATAAGGAAGGAAAGAGGTTGAGGTTTATAAGTGAAGTGGAAGAGAAAGAT 1088
Query 1158 GGCAAGCTTTGGATTGGTTCTGTTCTCGTGCCTTTTCTTGGTGTCTATGATTTGTAGTTT 1217
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1089 GGCAAGCTTTGGATTGGTTCTGTTCTCATGCCTTTTCTTGGTGTTTATGATTTGTAGTTT 1148
Query 1218 CCTACTTTGCTCAGACT 1234
||||| |||||| ||||
Sbjct 1149 CCTACATTGCTCTGACT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5