BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57040.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486148 jgi|Araly1|486148|fgenesh2_kg.5__2140__AT3G57040.1 1720 0.0
Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1 455 4e-127
> Ahg486148 jgi|Araly1|486148|fgenesh2_kg.5__2140__AT3G57040.1
Length=1307
Score = 1720 bits (931), Expect = 0.0
Identities = 1236/1369 (90%), Gaps = 77/1369 (6%)
Strand=Plus/Plus
Query 1 AAAAATCCTGCAAAAGatttgttttcattattttatttta-tttaggaaactttgtc-tt 58
||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| ||
Sbjct 1 AAAAATCCTCCAAAAGATTTGTTTTGATTATTTTATTTTATTTTA-GAAACTTTGTCTTT 59
Query 59 ttttCCTTCCTCTGCGCTGTCTTCTTCAAAAAACAAAATATTTTGTTTTTTGTTCTATTA 118
|||||||||||||||||||||||||| || |||| | |||||||
Sbjct 60 TTTTCCTTCCTCTGCGCTGTCTTCTT-----AA-AAAA-A------------CTCTATTA 100
Query 119 GTAACTTTGCTTTCTCCACAATTCAAAGCTAATTTAGTTCTATTCATTTTTCCCTCTCTC 178
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 101 GTAATTTTGCTTTCTCCACAATTCAAAGCTAAATTAGTTTTATTCATTTTTCCCTCTCTC 160
Query 179 TTTTGCAAAGATTTGGTAGAAGAAGAAAAATAAAAAGAGTTATAATCAATCAGATCTTGT 238
||||||||||||||||||| | || ||||| |||||||||||||||| | |||||||||
Sbjct 161 TTTTGCAAAGATTTGGTAG-A-AA-AAAAA-AAAAAGAGTTATAATC-A-GAGATCTTGT 214
Query 239 TTTAAGTGCAGACTC-TTTATTTCTCTTCCTCACCTAAGCTTCAGCATCGTAAATTTAAA 297
|||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 215 TTTAAGTGCAAACTCTTTTATTTCTCTTCCTCACCTAAGCTTCAGCATCGTAAA-TTAAA 273
Query 298 -ACTAAAATCGCATCAAATCCCGGAGATAGGAAAGAAAATAATTGATTGTTTCTAGTGAA 356
| ||||||||||||||||||| |||| | ||| |||| |||||||| ||| |||||||
Sbjct 274 GATTAAAATCGCATCAAATCCCAGAGA-A--AAA-AAAA-AATTGATTCTTTTTAGTGAA 328
Query 357 GAACaaaaaaaaaaaaGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATAAGATCT 416
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 329 GAAC--AAAAAAAAAAGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATTTGATCT 386
Query 417 TCTTT---A----TTTGT-TATCTTCAAGTTTCTGCAATGGGTATGGCAGCAGAATCGCA 468
||||| | ||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 387 TCTTTGAGATTTCTTTTTCTATCTTCAAGTTT-TGCAATGGGTATGGCAGCAGAATCGCA 445
Query 469 GTTTCATGTTTTAGCTGTTGATGATAGTTTATTTGATCGGAAACT-TATTGAGAGATTGC 527
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 446 GTTTCATGTTTTAGCTGTTGATGATAGTTTATTTGATCGGAAA-TATATAGAGAGATTGC 504
Query 528 TTCAAAAGTCTTCGTGTCAAGTAACAACTGTTGATTCTGGCTCAAAGGCTTTGGAGTTTC 587
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 505 TTCAGAAGTCTTCGTGTCAAGTAACTACTGTTGATTCTGGGTCAAAGGCTTTGGAGTTTC 564
Query 588 TGGGTTTAAGACAAAGTACTGATAGTAACGACCCAAATGCGTTTTCTAAGGCTCCTGTTA 647
|||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| ||||
Sbjct 565 TGGGTTTAAGACAAGGTATTGATAGTAACGACCCAAATGCGCTTTCTAAGTCTCCGGTTA 624
Query 648 ATCACCAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATGACTG 707
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 625 CTCAACAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGTATGACTG 684
Query 708 GTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGATATACCAGTAGTTA 767
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 685 GTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGACATACCAGTAGTTA 744
Query 768 TCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAG 827
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TCATGTCCTCTGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAG 804
Query 828 AGTTTTTCTTGAAACCAGTAAGATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AGTTTTTCTTGAAACCAGTAAGATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGA 864
Query 888 AAACAAAGTTGAAGAACCAGAAGCTGGAGGAGATTGAGACAACTTCAAAAGTCGAAAATG 947
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 865 AAACAAAGTTGAAGAACCAGAAGCTGGAGGAGATTGAGAAAACTTCAAAAGTCGAAAACG 924
Query 948 GAGTCCCCA-CTGCAGTAGCTGATCCAGAGATTAAAGATTCAACA-AACATTGAAATTGA 1005
|| | | | ||||||| ||| ||||||||||||||||||||| || ||||||| ||
Sbjct 925 GAATTGT-AGCAGCAGTAGTTGAACCAGAGATTAAAGATTCAACACAAG-TTGAAATCGA 982
Query 1006 AATCTTGCCTCTGCAACAAGATCTGCTATTAGTTCAACAAGAGGAGCAAACATTGAGTAT 1065
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 983 AATCTTGCCTCTGCAACAAGATCTGCTATTAGTACAACAAGAGGAGCAAACATTGAGTAC 1042
Query 1066 CAACAACAAGAGGAAGTCAGTGGAAGAAGGGATTTCAACTGATAGAGCACGTCCTAGATT 1125
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1043 CAACAACAAGAGGAAGTCAATGGAAGAAGGGATTTCAACAGATAGAGCACGTCCTAGATT 1102
Query 1126 CGACGGTATCGCAACCGCTGTCTGATCTACCAGCTATGATACTTCTTTTTTCGGTTTCTG 1185
||||||||||||||| |||||||||||||| || ||||| ||||||||| |||||||||
Sbjct 1103 TGACGGTATCGCAACCACTGTCTGATCTACC-GCAATGATGCTTCTTTTTCCGGTTTCTG 1161
Query 1186 ATTTAGATTTTTGTAGATTTTCTTAGGAATGCTTCTACTGGTACAGTACATGGTTTCAGT 1245
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1162 ATTTAGAGTTTTGTAGATTTTCGTAGGAATGCTTCTACTGGTACAATACATGGTTTCAGT 1221
Query 1246 AGGGAATGCAGAGAGGGGAATATGATGATGATGTTGTATGTGGGGATAATGTTTATAAGT 1305
|| |||||||||||||| | | | | | || | | |||||||||||
Sbjct 1222 AGAGAATGCAGAGAGGG---T--G--G--G--G----AT------A-A-TGTTTATAAGT 1258
Query 1306 ACATCAGTAAATCTTACATGGTTAATAACCCAGTTCCCAGTTTTGTTTC 1354
|||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1259 ACATCAGTAAATCTTACATGGTGAATAATCCAATTCCCAGTTTTGTTTC 1307
> Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1
Length=1432
Score = 455 bits (246), Expect = 4e-127
Identities = 464/563 (82%), Gaps = 40/563 (7%)
Strand=Plus/Plus
Query 358 AACaaa-aa-aaaaaaaGTCGAAGACTTTACATCTGGGTTCATCG-ATTTGAGA-TAAGA 413
|||||| || ||||||||| ||| ||||| |||||||||| ||| |||| ||| | |||
Sbjct 194 AACAAAGAAGAAAAAAAGTTGAAAACTTTGCATCTGGGTTTGTCGAATTT-AGATTCAGA 252
Query 414 TCTTCTTTATTTGTTATC--TTCAAGTTTCT-GCAATGGGT-ATGGCAGCAGAATCGCAG 469
|||| | ||| || || || | ||| ||||| ||| |||| | |||| || ||
Sbjct 253 ---TCTTGA-AAGTT-TCGATTGAA-TCTCTGGCAAT-GGTAATGGAAACAGAGTCAAAG 305
Query 470 TTTCATGTTTTAGCTGTTGATGATAGT-TTATTTGATCGGAAACTTATTGAGAGATTGCT 528
|| |||||||||||||||||||||||| || |||||||||||| | || |||||||||||
Sbjct 306 TTCCATGTTTTAGCTGTTGATGATAGTCTT-TTTGATCGGAAAATGATAGAGAGATTGCT 364
Query 529 TCAAAAGTCTTCGTGTCAAGTAACAACTGTTGATTCTGGCTC-AAAGGCT-TTGGAGTTT 586
||||||||||| ||||||||||| || |||||||| ||||| ||| ||| || || |||
Sbjct 365 CCAAAAGTCTTCATGTCAAGTAACTACAGTTGATTCAGGCTCTAAA-GCTCTT-GAATTT 422
Query 587 CTGGGTTTAAGACAAAGTACTGATAG-TAACGACCCAAATGCGTTTTCTA-AGGCTCCTG 644
||||||||||| |||| ||| | ||| ||||||||||| | |||| | | ||
Sbjct 423 CTGGGTTTAAG----AGTA--GAT-GACAACAACCCAAATGCGCTCTCTACA-TCACC-C 473
Query 645 TTAA-TCACCAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATG 703
|| ||| |||| ||||||| | ||||||||||| |||||||| |||||||||||||||
Sbjct 474 CAAATTCATCAGGAAGTTGAAATAAATCTTATAATAACAGATTACTGTATGCCTGGCATG 533
Query 704 ACTGGTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGA-GATATACCAGT 762
|||||||||||||||||||||||||| ||||||||| | || || ||| | ||||| ||
Sbjct 534 ACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCATTAAGAAGC-ATACCTGT 592
Query 763 AGTTATCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGC 822
||||| ||||| || ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct 593 CGTTATAATGTCATCTGAGAACGTTCCAGCTAGAATCTCCAGATGTTTGGAAGAAGGAGC 652
Query 823 TGAAGAGTTTTTCTTGAAACCAGTAA-GATTGGCTGATCTTAACAAGTTGAAACCTCATA 881
|||||||||||||||||||||||||| | || |||||||||| |||||||||||||||||
Sbjct 653 TGAAGAGTTTTTCTTGAAACCAGTAAAG-TTAGCTGATCTTACCAAGTTGAAACCTCATA 711
Query 882 TGATGAAAAC-AAAGTTGAAGAA 903
|||||||||| ||| ||||||||
Sbjct 712 TGATGAAAACCAAA-TTGAAGAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5