BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57050.1 Length=1775 Score E Sequences producing significant alignments: (Bits) Value Ahg486150 jgi|Araly1|486150|fgenesh2_kg.5__2142__AT3G57050.2 2039 0.0 > Ahg486150 jgi|Araly1|486150|fgenesh2_kg.5__2142__AT3G57050.2 Length=1627 Score = 2039 bits (1104), Expect = 0.0 Identities = 1232/1295 (95%), Gaps = 4/1295 (0%) Strand=Plus/Plus Query 374 CTATGAATATCAAAGAAGAAGCTAGCGTCTCTACATTATTGGTGAACTTGGATAATAAAT 433 ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| Sbjct 311 CTATGAATATCAAAGAAGAAGCTAGTGTCTCTACATTATTGGTTAACGTGGATAATAAAT 370 Query 434 TTGATCCCTTTGATGCAATGAGCACTCCGCTTTACCAAACTGCTACTTTTAAGCAGCCTT 493 ||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 371 TTGATCCCTTTGAAGCAATGAGCACTCCACTTTACCAAACAGCTACATTTAAGCAGCCTT 430 Query 494 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGCAATCCTACACGGGATGCAT 553 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 431 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGAAATCCTACACGGGATGCAT 490 Query 554 TGGAAAGCCTCCTTGCGAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGCGGAA 613 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 491 TGGAAAGCCTCCTTGCAAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGTGGAA 550 Query 614 TGGCTGCTCTTAGTGCTGTTACACATCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 673 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 551 TGGCTGCTCTTAGTGCTGTTACACACCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 610 Query 674 ATGATGTATATGGTGGCTCTGACAGATTACTATCCCAAGTTGTTCCAAGATCTGGCGTTG 733 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 611 ATGATGTATATGGTGGCTCAGACAGATTACTATCCCAAGTTGTTCCAAGATCCGGCGTTG 670 Query 734 TGGTAAAACGAGTAAACACAACTAAGTTAGACGAGGTTGCTGCTGCAATTGGTCCCCAAA 793 ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| | Sbjct 671 TGGTAAAACGAGTAAACACAACTAATTTAAACGAGGTTGCTGCTGCGATTGGTCCCCGGA 730 Query 794 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCAAGACAACAAATTTCTGATATACGAA 853 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 731 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCCAGACAACAAATTTCTGATATACGAA 790 Query 854 AAATATCTGAGATGGCTCATGCTCAAGGTGCTCTTGTGTTGGTGGACAACAGTATTATGT 913 ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 791 AAATAGCTGAGATGGCTCATACTCAAGGTGCGCTTGTGTTGGTGGACAACAGTATTATGT 850 Query 914 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCGGCTACTA 973 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 851 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCAGCTACTA 910 Query 974 AGTTTATAGCCGGACACAGTGACGTGATGGCAGGTGTGCTTGCTGTAAAAGGCGAAAAAT 1033 |||||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 911 AGTTTATAGCTGGGCACAGTGATGTGATGGCGGGTGTGCTTGCTGTCAAAGGCGAAAAAT 970 Query 1034 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 971 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1030 Query 1094 GTTGGCTTTGCCTTCGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1153 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 GTTGGCTTTGCCTACGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1090 Query 1154 ACGCACGGAAAATTGCAATGTACTTGTCTTCTCATCCAAGAGTAAAGAAAGTGTACTATG 1213 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1091 ACGCACGGAAGATTGCAATGTACTTGTCTTCTCATCCAAGAGTGAAGAAAGTGTACTATG 1150 Query 1214 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCGAAGGGTGCAGGAT 1273 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1151 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCTAAGGGTGCAGGAT 1210 Query 1274 CAGTTTTTAGCTTTATAACTGGATCAGTTGCGCTTTCAAAGCATCTCGTAGAAACCACCA 1333 ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 1211 CAGTTTTTAGCTTTATAACTGGATCGGTTGCGCTATCAAAGCATCTTGTAGAAACCACCA 1270 Query 1334 AATACTTCAGCATAGCTGTCAGTTTTGGGAGTGTTAAGTCACTGATAAGCATGCCATGCT 1393 ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1271 AATACTTCAGCATTGCAGTCAGTTTTGGGAGTGTTAAGTCACTTATAAGCATGCCATGCT 1330 Query 1394 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGTTTGACGGAAGATC 1453 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1331 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGCTTGACGGAAGATC 1390 Query 1454 TTGTCCGTATATCTGCAGGAATTGAAGATGTTGATGATTTGATATCTGATCTTGACATTG 1513 |||||||||||||||| || || ||||||| ||||||||||| || ||||||||||||| Sbjct 1391 TTGTCCGTATATCTGCTGGCATCGAAGATGCGGATGATTTGATCTCGGATCTTGACATTG 1450 Query 1514 CCTTCAAAACCT-TCCCTCTCTAGTTTTGGTTTGTTCTTGTCTCAGCTTTTGTAGTTTCA 1572 |||| || |||| ||| ||||||| || ||||||||||||||| |||||||||||||| Sbjct 1451 CCTTTAATACCTGTCC-TCTCTAGCTTCCATTTGTTCTTGTCTCAACTTTTGTAGTTTCA 1509 Query 1573 TAGGTTCTTGAAATAAGGATCTA-TGTAACAAACCATAAAACATAATTTGGTGTTTGAAA 1631 |||||||||||| |||| ||||| | ||||||||||||| |||||||||||||||||||| Sbjct 1510 TAGGTTCTTGAAGTAAGAATCTAAT-TAACAAACCATAATACATAATTTGGTGTTTGAAA 1568 Query 1632 ACACATCAAGCAATAAATTCATTATTGTTAGATTT 1666 | | |||||||||||||||||| |||||||||||| Sbjct 1569 AGAGATCAAGCAATAAATTCATCATTGTTAGATTT 1603 Score = 444 bits (240), Expect = 1e-123 Identities = 282/302 (93%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 29 CTCACTTGAGCACGAGAACTGTCTCCGTCGCCG-TTATTATCTCGTCGGCTAATATCTCA 87 ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct 10 CTCACTTGAGCACGAGAACTGCCTCCGTCGCCGACT-TTATCTCGTCGGCTAATATCTCA 68 Query 88 GACGAGAAATCGACGCCGGAGAAAAAGCAATTT-AGTTCTCTTTCATCTACCAAAATGAC 146 ||||||||||||||||||||||| |||| ||| | |||||||||||| |||| |||| | Sbjct 69 GACGAGAAATCGACGCCGGAGAAGAAGCTTTTTTAATTCTCTTTCATCAACCAGAATGGC 128 Query 147 ATCTTCTCTGTCACTTCACTCCTCCTTCGTACCTTCCTTCGCTGATCTCTCCGACCGAGG 206 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 129 ATCTTCTCTGTCACTTCATTCCTCCTTCGTACCTTCCTTCGCTGATCTCCCCGACCGAGG 188 Query 207 TTTGATCAGTAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACTTGGGAGAA 266 |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 189 TTTGGTCAATAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACCTGGGAGAA 248 Query 267 GAAGCAGATCTCAAATCGGAACTCTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 326 |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 249 GAAGCAGATCTCGAATCGCAACTTTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 308 Query 327 TG 328 || Sbjct 309 TG 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66619838505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5