BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57050.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486150 jgi|Araly1|486150|fgenesh2_kg.5__2142__AT3G57050.2 2039 0.0
> Ahg486150 jgi|Araly1|486150|fgenesh2_kg.5__2142__AT3G57050.2
Length=1627
Score = 2039 bits (1104), Expect = 0.0
Identities = 1232/1295 (95%), Gaps = 4/1295 (0%)
Strand=Plus/Plus
Query 374 CTATGAATATCAAAGAAGAAGCTAGCGTCTCTACATTATTGGTGAACTTGGATAATAAAT 433
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 311 CTATGAATATCAAAGAAGAAGCTAGTGTCTCTACATTATTGGTTAACGTGGATAATAAAT 370
Query 434 TTGATCCCTTTGATGCAATGAGCACTCCGCTTTACCAAACTGCTACTTTTAAGCAGCCTT 493
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 371 TTGATCCCTTTGAAGCAATGAGCACTCCACTTTACCAAACAGCTACATTTAAGCAGCCTT 430
Query 494 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGCAATCCTACACGGGATGCAT 553
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 431 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGAAATCCTACACGGGATGCAT 490
Query 554 TGGAAAGCCTCCTTGCGAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGCGGAA 613
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 491 TGGAAAGCCTCCTTGCAAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGTGGAA 550
Query 614 TGGCTGCTCTTAGTGCTGTTACACATCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 673
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 551 TGGCTGCTCTTAGTGCTGTTACACACCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 610
Query 674 ATGATGTATATGGTGGCTCTGACAGATTACTATCCCAAGTTGTTCCAAGATCTGGCGTTG 733
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 611 ATGATGTATATGGTGGCTCAGACAGATTACTATCCCAAGTTGTTCCAAGATCCGGCGTTG 670
Query 734 TGGTAAAACGAGTAAACACAACTAAGTTAGACGAGGTTGCTGCTGCAATTGGTCCCCAAA 793
||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |
Sbjct 671 TGGTAAAACGAGTAAACACAACTAATTTAAACGAGGTTGCTGCTGCGATTGGTCCCCGGA 730
Query 794 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCAAGACAACAAATTTCTGATATACGAA 853
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 731 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCCAGACAACAAATTTCTGATATACGAA 790
Query 854 AAATATCTGAGATGGCTCATGCTCAAGGTGCTCTTGTGTTGGTGGACAACAGTATTATGT 913
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 791 AAATAGCTGAGATGGCTCATACTCAAGGTGCGCTTGTGTTGGTGGACAACAGTATTATGT 850
Query 914 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCGGCTACTA 973
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 851 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCAGCTACTA 910
Query 974 AGTTTATAGCCGGACACAGTGACGTGATGGCAGGTGTGCTTGCTGTAAAAGGCGAAAAAT 1033
|||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 911 AGTTTATAGCTGGGCACAGTGATGTGATGGCGGGTGTGCTTGCTGTCAAAGGCGAAAAAT 970
Query 1034 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1030
Query 1094 GTTGGCTTTGCCTTCGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1153
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GTTGGCTTTGCCTACGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1090
Query 1154 ACGCACGGAAAATTGCAATGTACTTGTCTTCTCATCCAAGAGTAAAGAAAGTGTACTATG 1213
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1091 ACGCACGGAAGATTGCAATGTACTTGTCTTCTCATCCAAGAGTGAAGAAAGTGTACTATG 1150
Query 1214 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCGAAGGGTGCAGGAT 1273
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1151 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCTAAGGGTGCAGGAT 1210
Query 1274 CAGTTTTTAGCTTTATAACTGGATCAGTTGCGCTTTCAAAGCATCTCGTAGAAACCACCA 1333
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1211 CAGTTTTTAGCTTTATAACTGGATCGGTTGCGCTATCAAAGCATCTTGTAGAAACCACCA 1270
Query 1334 AATACTTCAGCATAGCTGTCAGTTTTGGGAGTGTTAAGTCACTGATAAGCATGCCATGCT 1393
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1271 AATACTTCAGCATTGCAGTCAGTTTTGGGAGTGTTAAGTCACTTATAAGCATGCCATGCT 1330
Query 1394 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGTTTGACGGAAGATC 1453
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1331 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGCTTGACGGAAGATC 1390
Query 1454 TTGTCCGTATATCTGCAGGAATTGAAGATGTTGATGATTTGATATCTGATCTTGACATTG 1513
|||||||||||||||| || || ||||||| ||||||||||| || |||||||||||||
Sbjct 1391 TTGTCCGTATATCTGCTGGCATCGAAGATGCGGATGATTTGATCTCGGATCTTGACATTG 1450
Query 1514 CCTTCAAAACCT-TCCCTCTCTAGTTTTGGTTTGTTCTTGTCTCAGCTTTTGTAGTTTCA 1572
|||| || |||| ||| ||||||| || ||||||||||||||| ||||||||||||||
Sbjct 1451 CCTTTAATACCTGTCC-TCTCTAGCTTCCATTTGTTCTTGTCTCAACTTTTGTAGTTTCA 1509
Query 1573 TAGGTTCTTGAAATAAGGATCTA-TGTAACAAACCATAAAACATAATTTGGTGTTTGAAA 1631
|||||||||||| |||| ||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1510 TAGGTTCTTGAAGTAAGAATCTAAT-TAACAAACCATAATACATAATTTGGTGTTTGAAA 1568
Query 1632 ACACATCAAGCAATAAATTCATTATTGTTAGATTT 1666
| | |||||||||||||||||| ||||||||||||
Sbjct 1569 AGAGATCAAGCAATAAATTCATCATTGTTAGATTT 1603
Score = 444 bits (240), Expect = 1e-123
Identities = 282/302 (93%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 29 CTCACTTGAGCACGAGAACTGTCTCCGTCGCCG-TTATTATCTCGTCGGCTAATATCTCA 87
||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 10 CTCACTTGAGCACGAGAACTGCCTCCGTCGCCGACT-TTATCTCGTCGGCTAATATCTCA 68
Query 88 GACGAGAAATCGACGCCGGAGAAAAAGCAATTT-AGTTCTCTTTCATCTACCAAAATGAC 146
||||||||||||||||||||||| |||| ||| | |||||||||||| |||| |||| |
Sbjct 69 GACGAGAAATCGACGCCGGAGAAGAAGCTTTTTTAATTCTCTTTCATCAACCAGAATGGC 128
Query 147 ATCTTCTCTGTCACTTCACTCCTCCTTCGTACCTTCCTTCGCTGATCTCTCCGACCGAGG 206
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 129 ATCTTCTCTGTCACTTCATTCCTCCTTCGTACCTTCCTTCGCTGATCTCCCCGACCGAGG 188
Query 207 TTTGATCAGTAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACTTGGGAGAA 266
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 189 TTTGGTCAATAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACCTGGGAGAA 248
Query 267 GAAGCAGATCTCAAATCGGAACTCTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 326
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 249 GAAGCAGATCTCGAATCGCAACTTTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 308
Query 327 TG 328
||
Sbjct 309 TG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5