BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57062.1

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938677 jgi|Araly1|938677|scaffold_502868.1                        281    3e-75


> Ahg938677 jgi|Araly1|938677|scaffold_502868.1
Length=295

 Score =  281 bits (152),  Expect = 3e-75
 Identities = 172/182 (95%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  86   AAAAGCTTTGAGATGGCGATGCCGCTGGGCATGGCGATGTATCTGATGAGAATGGTTTGG  145
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  AAAAGCTTTCAGATGGCGATGCCGCTGGGCATGGCGATGTATCTGATGAGAATGGTTTGG  173

Query  146  TTTTCTCTGAGTGGTTGGGTTTTCACTTGCGTGGCTATCGCTGATGAGATCGCTGGTTCT  205
            |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct  174  TTTTCTCTGAGTGGTTGGGTTTTCACTTGCGTGGCTATTGCTGACGAAATCGCTGGCTCT  233

Query  206  CTGAGAAACGGAGATATTGGTCCTTTCCACGTCGGATGATTGAATTCGAGATCCTTAGCT  265
            || |||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||
Sbjct  234  CTTAGAAACGGAGATATTGGTCCTTTCCATGTCGGATGATCGTATTCGAGATCTTTAGCT  293

Query  266  CT  267
            ||
Sbjct  294  CT  295



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19421194801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5