BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57070.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 2529 0.0
Ahg952326 jgi|Araly1|952326|scaffold_5900002.1 375 4e-103
Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760 359 4e-98
Ahg934956 jgi|Araly1|934956|scaffold_402944.1 357 2e-97
Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759 353 2e-96
> Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1
Length=1723
Score = 2529 bits (1369), Expect = 0.0
Identities = 1629/1747 (93%), Gaps = 47/1747 (3%)
Strand=Plus/Plus
Query 1 ATCAAAATCAAATCGAGAACTGTTGTTGTGTCCGAAAATCAACATCAACATCGTTTCTTT 60
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||
Sbjct 1 ATCAAAATCAAATCGAGAACTG-TG--GTGTCCGAAAATCAACATCAACATCG-TTC-TT 55
Query 61 CTTCTGCCATTAAATTTCACCATCTTCCACCTTCAACTGCCCTAGACAGCTATTCTCCAC 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 56 CTGCTGCCATTAAATTTCACCATCTTCCACCTCCAACTGCCCTAGACAGCTATTCTCCAC 115
Query 121 CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAG-ATAACCAAACAATCTCAGAA 179
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 116 CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAGCAAAACCAAA-AATCTCAGAA 174
Query 180 GAAACCAGAAAGAGCAAAGAAACTAAAAACTATTATTCAT-TAAAGTC-AGTGTTTTTAA 237
|||||||||||||||||||||||| |||| | | | | | |||||| ||||||||| |
Sbjct 175 GAAACCAGAAAGAGCAAAGAAACT-AAAAGTCTAAAACCTAAAAAGTCAAGTGTTTTT-A 232
Query 238 ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCCGTTTCTTCTGCTTC 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 233 ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCTGTTTCTTCTACTTC 292
Query 298 TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGA-T--TCATCTTCACC 354
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 293 TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGATTCATCATCTTCACC 352
Query 355 GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA 412
Query 415 AGGCGACTCTCATCACCTTGTTTCCCTTACATCTACATCGTACGGTTCTCTTCTCCTCCT 474
||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 413 AGGCGACACTCATCACCTTGTCTCCCTCACATCTACGTCGTACGGTTCTCTTCTCCTCCT 472
Query 475 TGATCTCGATGGATCCAAAAACTCCTCTTCCGACCAACAAACGCTGCCTCGTATCTCAAT 534
||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct 473 CGATCTCGATGGATCCAATAACT-C-C-TCCGACCAACAAACGCTGCCTCGTATCTCAAT 529
Query 535 CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGATTCAGTCATAAACACTTGGGAGCT 594
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 530 CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGACTCCGTCATAAACACGTGGGAGCT 589
Query 595 TATGGATGGCTTGGACGATGAATTCGAATTCGAAATTCCCAAACCGGGTAAGCGTCTAAA 654
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 590 TATGGATGGCTTGGACGACGAATTCGAATTCGAAATTCCCAAACCTGGTAAGCGTCTAAA 649
Query 655 TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTTCGTT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTGCGTT 709
Query 715 GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC 769
Query 775 TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC 829
Query 835 TGATTTAGATCCCAGCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAG 894
||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 830 TGATTTAGATCCCAGCATTGTCTCATCTTACAAGAAAGCTTTGTCTTCCAAGCAATTAAG 889
Query 895 CAATCATAGTAATACTAGAAACCCTCATAGACCCACAAAGTCTCTCTCTTGTAGCCCATC 954
|||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 890 CAATCATAGTAACACTAGAAACCCTCTTAGACCCACAAAATCCCTCTCTTGTAGCCCATC 949
Query 955 ATCAAATCCATCCATCTTAATAAGCGAAGAACCAAAATCTGTATCCTCTAGTCAATTGAT 1014
||| | ||| | | ||| || |||||||||||||||||||||||||||||| ||||
Sbjct 950 ATC----C-ATC--T-T-AATCAGTGAAGAACCAAAATCTGTATCCTCTAGTCAACTGAT 1000
Query 1015 TTCATCACCAG-CCAAACCGAGATTACCAGGAACAGAAGACAAGATTGTACTCTACTTCA 1073
|||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1001 TTCATCAC-AGGCCAAACCGAGATTACCAGGGACAGAAGACAAGATTGTGCTCTACTTCA 1059
Query 1074 CAACCCTCAGAGGAATTCGAAAGACATACGAGGATTGTTGTTGCGTTAGAGCGATATTGA 1133
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1060 CAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGCTGTTGCGTTAGAGCGATACTGA 1119
Query 1134 GAGGAG-TTCAAGTGTCCGTAGACGAACGTGACATCTCTATGGATTCCAAATACAGGAAA 1192
|||| | ||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1120 GAGG-GCTTCAAGTCACGGTAGACGAACGTGACATCTCTATGGATTCTAAATACAGGAAA 1178
Query 1193 GAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC 1252
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GAGCTTCAAAGTGTGCTTGTTGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC 1238
Query 1253 AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAATGATGGTGGTGAATTA 1312
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1239 AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAACGATGGTGGTGAATTA 1298
Query 1313 GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGT 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGG 1358
Query 1373 GATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTGTTTGAAGAACAA 1432
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1359 GATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTGTTTGAAGAACAA 1418
Query 1433 GATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGTGTG 1492
|| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1419 GACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGCGTG 1478
Query 1493 TGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAAGGGGA-TATAGATT 1551
|||||||||||||||||| ||||||||||||| |||| | | ||||||||| ||||||||
Sbjct 1479 TGTTGTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGCGGGTGAAAGGGGAATATAGATT 1538
Query 1552 GATTGACTAAACATGGTATTTGGTTAGTAATGTATATTCAAATAAGTAAGTTGGCTCAAG 1611
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1539 GATTGACTAAACCTGGTATTTGGTTAGTAATGTATATTGAAATAAGTAAGTTGGCTCAAG 1598
Query 1612 CCTTTTATTATTTACTCT-T-ATGAGTTGTGTTCTTTTGTTCCATTTACGCTCTTGACCT 1669
|||||||| || ||||| | |||| |||||||||||||||||||||| | |||||| ||
Sbjct 1599 CCTTTTATG-TT-ACTCTCTTATGACTTGTGTTCTTTTGTTCCATTTATGTTCTTGATCT 1656
Query 1670 T-----TTGAACTAAATGATTCTTACTATA-TG-A--A---GTACATCAAATGGTAGATG 1717
| || ||||||||||||||||||||| | | | |||||| ||||| ||||||
Sbjct 1657 TGACCCTTAAACTAAATGATTCTTACTATACTATATTATAAGTACATAAAATGTTAGATG 1716
Query 1718 ATGATTG 1724
|||||||
Sbjct 1717 ATGATTG 1723
> Ahg952326 jgi|Araly1|952326|scaffold_5900002.1
Length=256
Score = 375 bits (203), Expect = 4e-103
Identities = 232/246 (94%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 1299 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 60
Query 1359 GCCGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAG 1418
|||| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 61 GCCGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAG 120
Query 1419 TGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGG 1478
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 121 TGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGG 180
Query 1479 TGCGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAA 1538
||||||||||||||| | |||||||||||||| ||||||||||||| |||||| | ||||
Sbjct 181 TGCGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTGGGTGAAA 238
Query 1539 GGGGAT 1544
||||||
Sbjct 239 GGGGAT 244
> Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760
Length=234
Score = 359 bits (194), Expect = 4e-98
Identities = 219/231 (95%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1301 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 60
Query 1361 CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG 1420
|| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 61 CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG 120
Query 1421 TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG 1480
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG 180
Query 1481 CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG 1531
||||||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct 181 CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG 229
> Ahg934956 jgi|Araly1|934956|scaffold_402944.1
Length=1267
Score = 357 bits (193), Expect = 2e-97
Identities = 365/446 (82%), Gaps = 20/446 (4%)
Strand=Plus/Plus
Query 1050 AAG-ACAAGATTGTACTCTACTTCACAACCCTCAGAGGAATTCGAAAGACATACGAGGAT 1108
||| ||||||| ||| | |||||||| | ||||||||||||||||||||| || || |||
Sbjct 795 AAGAACAAGATAGTATTGTACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGAT 854
Query 1109 TGTTGTTGCGTTAGAGCGATATTGAGAGGAG-TTCAAG-TGTCCGTAGACGAACGTGACA 1166
||||||||||||||| ||||||||||||| | |||| | || | ||||| ||||| ||||
Sbjct 855 TGTTGTTGCGTTAGAACGATATTGAGAGG-GTTTCAGGTTG-CGGTAGAGGAACGCGACA 912
Query 1167 TCTCTATGGATTCCAAATACAGGAAAGAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAAC 1226
|||| |||||||||||||| || |||||||||| || ||| || | ||||||||
Sbjct 913 TCTCAATGGATTCCAAATATAGAAAAGAGCTTC--AGAATGC-ACTCGGTGAAGAGAAAC 969
Query 1227 CGGTTTGTTTGCCTCAGGTGTTTATCAGAGGAACTCA-CATTGGTGGCGTGGAGGAGATT 1285
||||||||||||||||||||||||| ||||| || ||||||||| | ||||||||
Sbjct 970 CGGTTTGTTTGCCTCAGGTGTTTATAAGAGGTG-TCCGCATTGGTGGAATTGAGGAGATC 1028
Query 1286 ATGC-AGCTAAATGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGA 1344
| | | || || ||||| || ||| | ||||||||||| ||||||||||||||||||||
Sbjct 1029 AAGATA-CTCAACGATGGAGGCGAACTGGCAGAGATGTTAAAAGATTTCCCTGCTTGTGA 1087
Query 1345 A-CGCTTGGG-GACATGCCGGA-GCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTG 1401
| | | |||| | | ||| | | |||| || ||||||||||||||||| |||||||| ||
Sbjct 1088 ATC-CGTGGGAGCC-TGC-GAAAGCTGCGGGGATGCAAGGTTTGTGCCGTGTACTAATTG 1144
Query 1402 TGATGGTAGCACCAAAGTGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCC-TAAAT 1460
|| |||||| || ||||||||||| ||| |||| || |||||||| | || | | |||
Sbjct 1145 TGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGAAGATGGGTTTAAGAGATG-CAATGAAT 1203
Query 1461 GCAATGAGAATGGATTGGTGCGTTGT 1486
||||||||||||||||||| ||||||
Sbjct 1204 GCAATGAGAATGGATTGGTACGTTGT 1229
Score = 189 bits (102), Expect = 6e-47
Identities = 273/349 (78%), Gaps = 37/349 (11%)
Strand=Plus/Plus
Query 563 TCTCCTGATTCAGTCATAAACACTTGGGAGCTTATGGATGGCTTGGACGATGAATTCGAA 622
|||||||| ||||| || ||||| |||||||| ||| | ||| | ||||| || |||| |
Sbjct 318 TCTCCTGACTCAGTGATCAACACATGGGAGCTCATGAACGGCCTCGACGACGATTTCG-A 376
Query 623 TTC-GA-AATTCCCAAAC-CG---G-GTAA--GCGTC-TAAATTCGGATT-TTTGCTCTA 671
|| || |||||| | || | | |||| |||| |||||| ||||| ||| ||||
Sbjct 377 CTCTGAGAATTCCGATACAAGTAAGCGTAATTCCGTCGTAAATTTGGATTGTTT-TTCTA 435
Query 672 AACCCGA-CCCGAATCGGA-ATGTGAGTT-TAAATGGGTCTTCGTTGAAATTGGATGAAT 728
||||| | | ||||| || | ||| ||| | ||||||||||||||||||||||| ||||
Sbjct 436 AACCC-ATCAAGAATC-GAGACGTG-GTTATTAATGGGTCTTCGTTGAAATTGGACGAAT 492
Query 729 CTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCCTTTGACTTATAAAC 788
||||| || || | || ||||| |||||| || | || ||| |||||
Sbjct 493 CTTAC--GA-----AG-CT-GAGGAAGA--TTGGAGA-----TTAC--TGCCTTTTAAAC 534
Query 789 CTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCTGATTTAGATCCCA 848
||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 535 CTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTGATTTAGATCCTA 594
Query 849 GCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAGCAA 897
|||| ||||||| ||||||||||| ||||||||||||| | |||||||
Sbjct 595 ACATTATCTCATCTTACAAGAAAGCATTGTCTTCTAAGCAACTAAGCAA 643
> Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759
Length=234
Score = 353 bits (191), Expect = 2e-96
Identities = 218/231 (94%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1301 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 60
Query 1361 CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG 1420
|| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 61 CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG 120
Query 1421 TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG 1480
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTGAAGAACAAGACAAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG 180
Query 1481 CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG 1531
||||||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct 181 CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5