BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57080.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938680 jgi|Araly1|938680|scaffold_502871.1 1038 0.0
> Ahg938680 jgi|Araly1|938680|scaffold_502871.1
Length=714
Score = 1038 bits (562), Expect = 0.0
Identities = 666/716 (93%), Gaps = 7/716 (1%)
Strand=Plus/Plus
Query 5 AGATAA-GG-GA-GACAAAAATGGAAGTGAAAGGGAAAGAGACAGCTTCG-GTTCTGTGT 60
|||||| || || |||||||||||||||||||||||| ||||||||| || | ||| |||
Sbjct 1 AGATAAGGGAGACGACAAAAATGGAAGTGAAAGGGAAGGAGACAGCTCCGAG-TCTATGT 59
Query 61 CTGAGCAAATACGTGGATCTATCGAGTGAAGAGAGTCATAGATACTATCTTGCGCGGCGA 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 60 CTGAGCAAATACGTGGATCCATCGAGTGAAGAGAGTCATAGATACTATCTTGCGCGGCAA 119
Query 121 AATGGCTTGCAGATGCTCCGAGACAGAGGCTACGAAGTCTCCGACGAAGATATCAATCTC 180
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AATGCCTTGCAGATGCTCCGAGACAGAGGCTACCAAGTCTCCGACGAAGATATCAATCTC 179
Query 181 TCCCTTCACGATTTTCGAACTGTTTACGGTGAACGTCCCGATGTTGATCGTCTTCGCATC 240
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 180 TCCCTTCACGATTTTCGAGCTGTTTACGGCGAACGTCCCGATGTTGATCGTCTCCGCATC 239
Query 241 TCCGCTCTGCATCGCTCCGATTCTACCAAAAAGGTAAAAATTGTCTTTTTTGGTACTAGT 300
||||||| |||||||||||||||| | |||||||| || ||||||||||||||||| ||
Sbjct 240 TCCGCTCAGCATCGCTCCGATTCTTCTAAAAAGGTCAAGGTTGTCTTTTTTGGTACTGGT 299
Query 301 ATGGTTAAAGTCAACGCAATCCGCAGTGTAGTAGCGGATATACTTAGCCAAGAAACCA-T 359
|||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||| | |
Sbjct 300 ATGGTTAAAGTCAATGCAATCCGCAGTATAGCAGCGGATGTACTTAGCCAAGAAAC-AGT 358
Query 360 AACTGGGCTGATATTGGTTCTGCAAAACCATGTAACCAATCAAGCCTTGAAAGCCATTGA 419
|||||||||||| ||||||||||||| ||| |||||||| |||||| |||||||||||||
Sbjct 359 AACTGGGCTGATTTTGGTTCTGCAAAGCCAAGTAACCAAACAAGCCATGAAAGCCATTGA 418
Query 420 ACTTTTTTCTTTCAAGGTCGAGATATTCCAGATAACGGATCTGCTAGTCAACATAACCAA 479
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 419 ACTCTTTTCTTTCAAGGTCGAGATATTCCAGATAACCGATCTACTAGTCAACATAACCAA 478
Query 480 ACATTCACTGAAGCCACAACATCAGGTGTTGAATGATGAAGAGAAGACAACACTTCTCAA 539
|||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 479 ACATGCACTCAAGCCACAACATCGGGTTTTGAATGATAAAGAGAAGACAACACTTCTCAA 538
Query 540 GAAGTTCAGCATTGAGGAAAAACAGCTTCCTCGGATTTCAAAGAAAGATGCTATCGTCCG 599
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 539 GAAGTTCAGTATTGAGGAAAAACAGCAACCTCGGATTTCAAAGAAAGATGCGATCGTCCG 598
Query 600 GTACTACGGATTAGAGAAAGGGCAAGTTGTGAAGGTGAATTACAGAGGCGAACTCACGGA 659
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 CTACTACGGATTAGAGAAAGGGCAAGTTGTGAAGGTGAATTATAGAGGCGAACTCACGGA 658
Query 660 ATCGCATGTTGCCTTCCGATGTGTGTGGTGAAGAAACCAATTAAAAACCATCTTGT 715
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 659 ATCGCATGTTGCCTACCGATGTGTGGGGTGAAGAAACCAATAAAAAACCATCTTGT 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5